Wall clock time and date at job start Tue Mar 31 2020 20:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.47232 * 2 1 4 4 C 1.34779 * 120.00097 * 84.73068 * 3 2 1 5 5 O 1.21281 * 119.99785 * 5.46163 * 4 3 2 6 6 C 1.50696 * 120.00092 * 185.46296 * 4 3 2 7 7 H 1.09005 * 109.44039 * 306.48247 * 6 4 3 8 8 C 1.53129 * 109.44412 * 186.58311 * 6 4 3 9 9 C 1.53683 * 109.17755 * 169.96634 * 8 6 4 10 10 C 1.50806 * 108.00823 * 49.21367 * 9 8 6 11 11 N 1.29605 * 128.73355 * 163.45459 * 10 9 8 12 12 N 1.28866 * 109.79471 * 180.15889 * 11 10 9 13 13 C 1.31380 * 109.93196 * 359.97438 * 12 11 10 14 14 O 1.35528 * 126.58131 * 179.97438 * 13 12 11 15 15 N 1.35427 * 106.83846 * 0.20904 * 13 12 11 16 16 C 1.46208 * 129.13743 * 179.97438 * 15 13 12 17 17 C 1.46495 * 120.00072 * 264.73470 * 3 2 1 18 18 C 1.53950 * 113.74136 * 33.92135 * 17 3 2 19 19 N 1.47823 * 86.03694 * 222.08447 * 18 17 3 20 20 C 1.36930 * 134.45991 * 204.64377 * 19 18 17 21 21 H 1.07995 * 120.00531 * 179.86297 * 20 19 18 22 22 C 1.38821 * 119.99842 * 359.86771 * 20 19 18 23 23 N 1.31621 * 119.99785 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00216 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47111 * 59.99783 * 24 22 20 26 26 H 1.48493 * 109.47296 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46880 * 300.00056 * 24 22 20 28 28 C 1.47585 * 91.04555 * 24.54831 * 19 18 17 29 29 H 1.09003 * 109.46610 * 60.00310 * 1 2 3 30 30 H 1.09004 * 109.47021 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47444 * 299.99823 * 1 2 3 32 32 H 1.09004 * 109.47153 * 239.99818 * 2 1 3 33 33 H 1.09005 * 109.46929 * 120.00122 * 2 1 3 34 34 H 1.09002 * 109.48220 * 290.16223 * 8 6 4 35 35 H 1.09001 * 109.48195 * 50.19644 * 8 6 4 36 36 H 1.08999 * 110.29144 * 289.29110 * 9 8 6 37 37 H 1.09001 * 109.26506 * 168.53857 * 9 8 6 38 38 H 0.96698 * 113.99975 * 90.02368 * 14 13 12 39 39 H 1.08999 * 109.60561 * 282.65014 * 16 15 13 40 40 H 1.08997 * 109.60606 * 43.14779 * 16 15 13 41 41 H 1.09000 * 112.94617 * 165.51588 * 17 3 2 42 42 H 1.09000 * 113.76779 * 336.34685 * 18 17 3 43 43 H 1.08999 * 113.77039 * 107.74664 * 18 17 3 44 44 H 0.96999 * 119.99727 * 179.97438 * 23 22 20 45 45 H 1.09002 * 113.76559 * 221.14695 * 28 19 18 46 46 H 1.09000 * 113.86716 * 89.77401 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1420 2.0523 1.1623 5 8 1.9443 1.4834 2.2150 6 6 2.5257 3.5096 1.1538 7 1 3.4417 3.6402 0.5776 8 6 2.7564 3.9843 2.5913 9 6 3.3864 5.3858 2.5651 10 6 2.5713 6.2460 1.6323 11 7 2.5531 7.5377 1.5283 12 7 1.7180 7.8901 0.6123 13 6 1.1585 6.8258 0.0829 14 8 0.2320 6.8077 -0.9061 15 7 1.6813 5.7504 0.7188 16 6 1.4000 4.3303 0.5139 17 6 2.3723 2.0330 -1.2633 18 6 1.4968 1.5971 -2.4522 19 7 2.7521 1.5633 -3.2320 20 6 3.0587 1.6783 -4.5616 21 1 4.0871 1.6188 -4.8858 22 6 2.0474 1.8715 -5.4928 23 7 0.7941 1.9446 -5.0976 24 14 2.4656 2.0291 -7.3066 25 1 3.1458 0.7919 -7.7671 26 1 1.2178 2.2270 -8.0868 27 1 3.3657 3.1930 -7.5077 28 6 3.5421 1.3583 -2.0024 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.8040 4.0179 3.1203 35 1 3.4300 3.2935 3.0985 36 1 4.4156 5.3311 2.2104 37 1 3.3644 5.8088 3.5694 38 1 0.6076 6.7632 -1.7961 39 1 0.4498 4.0744 0.9825 40 1 1.3532 4.1171 -0.5540 41 1 2.4778 3.1138 -1.1689 42 1 1.0341 0.6189 -2.3217 43 1 0.7932 2.3611 -2.7831 44 1 0.0875 2.0800 -5.7483 45 1 4.4686 1.9319 -1.9748 46 1 3.6828 0.3102 -1.7381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950653062.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:59 Heat of formation + Delta-G solvation = 50.795930 kcal Electronic energy + Delta-G solvation = -30589.850871 eV Core-core repulsion = 26517.892565 eV Total energy + Delta-G solvation = -4071.958306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.35236 -41.70446 -39.59440 -38.73730 -37.94812 -36.09662 -34.33130 -34.00402 -32.88574 -31.24891 -29.78424 -29.37367 -26.62559 -26.27669 -25.22864 -24.96437 -23.55964 -23.42237 -21.77953 -21.03212 -20.01707 -19.52342 -18.99930 -18.51452 -18.06065 -17.37052 -17.16071 -16.72415 -16.51945 -16.03249 -15.75135 -15.47233 -15.43280 -15.35775 -15.04632 -14.65681 -14.34468 -13.88487 -13.63984 -13.53165 -13.34612 -13.24614 -13.19722 -12.95200 -12.88591 -12.83020 -12.67642 -12.47989 -12.30103 -12.15387 -12.04260 -11.99829 -11.89152 -11.50515 -11.33969 -11.25334 -10.93184 -10.80688 -10.12777 -9.65601 -8.94174 -7.92915 -5.25427 0.50952 0.96390 1.44513 1.48306 1.48639 1.54984 1.59906 1.85064 2.47417 2.66772 3.09222 3.11416 3.27794 3.30957 3.40521 3.51312 3.68032 3.82222 3.90221 3.95292 4.14343 4.21740 4.25310 4.32496 4.38647 4.39962 4.54461 4.55561 4.65169 4.79518 4.80610 4.85587 4.87444 4.94997 5.00349 5.00698 5.14448 5.22101 5.28296 5.35853 5.47256 5.51633 5.58530 5.89762 6.34947 6.36204 6.90629 7.03399 7.49875 7.59119 8.50434 9.23168 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010220 B = 0.004331 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.117842 B = 6464.185006 C = 8221.589233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.112 3.888 3 N -0.591 5.591 4 C 0.530 3.470 5 O -0.556 6.556 6 C -0.118 4.118 7 H 0.125 0.875 8 C -0.097 4.097 9 C -0.027 4.027 10 C 0.198 3.802 11 N -0.310 5.310 12 N -0.327 5.327 13 C 0.355 3.645 14 O -0.442 6.442 15 N -0.478 5.478 16 C 0.115 3.885 17 C 0.105 3.895 18 C 0.158 3.842 19 N -0.635 5.635 20 C -0.232 4.232 21 H 0.083 0.917 22 C -0.055 4.055 23 N -0.947 5.947 24 Si 0.969 3.031 25 H -0.281 1.281 26 H -0.297 1.297 27 H -0.277 1.277 28 C 0.109 3.891 29 H 0.049 0.951 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.428 0.572 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.124 0.876 42 H 0.034 0.966 43 H 0.048 0.952 44 H 0.249 0.751 45 H 0.064 0.936 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.675 0.889 14.141 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.010 4.010 3 N -0.322 5.322 4 C 0.318 3.682 5 O -0.435 6.435 6 C -0.140 4.140 7 H 0.143 0.857 8 C -0.136 4.136 9 C -0.066 4.066 10 C -0.070 4.070 11 N -0.151 5.151 12 N -0.178 5.178 13 C 0.049 3.951 14 O -0.245 6.245 15 N -0.181 5.181 16 C -0.008 4.008 17 C 0.001 3.999 18 C 0.032 3.968 19 N -0.362 5.362 20 C -0.361 4.361 21 H 0.101 0.899 22 C -0.249 4.249 23 N -0.595 5.595 24 Si 0.798 3.202 25 H -0.208 1.208 26 H -0.223 1.223 27 H -0.203 1.203 28 C -0.017 4.017 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.289 0.711 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.142 0.858 42 H 0.052 0.948 43 H 0.066 0.934 44 H 0.058 0.942 45 H 0.082 0.918 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.284 2.083 14.892 15.391 hybrid contribution -0.509 -1.426 -2.498 2.921 sum 2.775 0.657 12.394 12.718 Atomic orbital electron populations 1.22110 0.95342 1.02984 1.01525 1.21427 0.94796 0.81871 1.02944 1.48137 1.63658 1.14387 1.06011 1.20300 0.76439 0.88461 0.83014 1.90691 1.51427 1.70170 1.31173 1.21694 1.00117 0.90967 1.01216 0.85676 1.21570 1.03411 0.95692 0.92912 1.20603 0.97807 0.90472 0.97682 1.25429 0.94345 0.91864 0.95351 1.73917 1.16095 1.10377 1.14682 1.74753 1.09893 1.22975 1.10180 1.21933 0.94316 0.83398 0.95453 1.84856 1.27585 1.94266 1.17770 1.46666 1.32621 1.08509 1.30289 1.22110 0.99815 0.75108 1.03727 1.23779 0.96984 0.97889 0.81273 1.22623 0.90207 0.98298 0.85687 1.46058 1.04427 1.84218 1.01492 1.19263 0.93170 1.41919 0.81736 0.89886 1.25450 0.95243 1.02692 1.01506 1.69932 0.99042 1.56832 1.33738 0.85296 0.76419 0.78129 0.80341 1.20753 1.22282 1.20278 1.23127 0.95488 0.98413 0.84655 0.93142 0.90304 0.92888 0.90493 0.89739 0.90861 0.87237 0.85710 0.85645 0.71073 0.88451 0.87460 0.85849 0.94843 0.93353 0.94189 0.91758 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.86 9.95 71.98 0.72 -3.14 16 2 C 0.11 2.74 5.17 86.38 0.45 3.19 16 3 N -0.59 -14.42 2.70 -803.47 -2.17 -16.59 16 4 C 0.53 12.04 6.91 87.66 0.61 12.64 16 5 O -0.56 -15.23 15.54 -3.03 -0.05 -15.28 16 6 C -0.12 -2.06 1.67 -11.40 -0.02 -2.08 16 7 H 0.13 1.90 7.47 -2.38 -0.02 1.88 16 8 C -0.10 -1.39 4.65 30.87 0.14 -1.24 16 9 C -0.03 -0.35 6.34 30.11 0.19 -0.16 16 10 C 0.20 4.47 7.78 137.84 1.07 5.55 16 11 N -0.31 -9.15 12.17 -49.73 -0.61 -9.76 16 12 N -0.33 -10.52 12.24 -173.87 -2.13 -12.65 16 13 C 0.35 9.78 9.30 179.88 1.67 11.45 16 14 O -0.44 -10.62 13.64 -88.32 -1.20 -11.83 16 15 N -0.48 -11.08 3.16 -630.28 -1.99 -13.07 16 16 C 0.11 2.28 5.94 86.54 0.51 2.79 16 17 C 0.11 2.96 3.58 46.74 0.17 3.13 16 18 C 0.16 6.14 6.40 86.44 0.55 6.70 16 19 N -0.63 -27.89 3.70 -716.53 -2.65 -30.54 16 20 C -0.23 -11.71 10.70 84.04 0.90 -10.81 16 21 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.06 -2.86 5.50 84.86 0.47 -2.39 16 23 N -0.95 -51.85 11.39 21.65 0.25 -51.61 16 24 Si 0.97 42.43 29.55 68.60 2.03 44.46 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 26 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 27 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 28 C 0.11 3.55 8.46 86.48 0.73 4.28 16 29 H 0.05 1.37 6.64 -2.39 -0.02 1.36 16 30 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 2.02 6.19 -2.39 -0.01 2.01 16 33 H 0.08 1.99 7.51 -2.38 -0.02 1.98 16 34 H 0.07 1.19 8.12 -2.39 -0.02 1.17 16 35 H 0.11 1.38 7.88 -2.39 -0.02 1.36 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.43 6.68 9.06 -74.06 -0.67 6.01 16 39 H 0.10 1.96 8.12 -2.39 -0.02 1.94 16 40 H 0.11 2.25 5.64 -2.39 -0.01 2.23 16 41 H 0.12 3.11 4.37 -2.39 -0.01 3.10 16 42 H 0.03 1.36 5.33 -2.39 -0.01 1.34 16 43 H 0.05 2.16 7.16 -2.39 -0.02 2.15 16 44 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 45 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.05 1.49 7.27 -2.39 -0.02 1.47 16 Total: -1.00 -70.02 365.38 0.00 -70.02 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: 0.36 Total: 16.94 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 8.16 Total: 29.90 kcal Atomic # 7 Polarization: -124.91 SS G_CDS: -9.30 Total: -134.21 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -1.25 Total: -27.11 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -70.02 0.00 -70.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950653062.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.818 kcal (2) G-P(sol) polarization free energy of solvation -70.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds