Wall clock time and date at job start Tue Mar 31 2020 20:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46852 * 2 1 4 4 C 1.34775 * 120.00462 * 275.55640 * 3 2 1 5 5 O 1.21588 * 120.00056 * 185.22947 * 4 3 2 6 6 C 1.47527 * 119.99552 * 5.22678 * 4 3 2 7 7 C 1.36602 * 125.76700 * 175.52562 * 6 4 3 8 8 N 1.34810 * 106.83578 * 179.89706 * 7 6 4 9 9 C 1.46507 * 126.59171 * 180.13474 * 8 7 6 10 10 H 1.09005 * 110.45466 * 207.89954 * 9 8 7 11 11 C 1.54508 * 110.51430 * 85.29364 * 9 8 7 12 12 C 1.54475 * 104.06208 * 241.35585 * 11 9 8 13 13 O 1.44434 * 104.80302 * 23.97646 * 12 11 9 14 14 C 1.44425 * 105.27566 * 319.49054 * 13 12 11 15 15 N 1.40208 * 106.81437 * 0.35713 * 8 7 6 16 16 N 1.28761 * 108.36467 * 359.77292 * 15 8 7 17 17 C 1.46499 * 119.99870 * 95.82860 * 3 2 1 18 18 C 1.53944 * 113.74742 * 222.31786 * 17 3 2 19 19 N 1.47574 * 86.11653 * 222.04848 * 18 17 3 20 20 C 1.36944 * 134.48840 * 204.63870 * 19 18 17 21 21 H 1.08001 * 119.99879 * 180.02562 * 20 19 18 22 22 C 1.38814 * 120.00171 * 359.97438 * 20 19 18 23 23 N 1.31623 * 119.99804 * 359.97438 * 22 20 19 24 24 Si 1.86791 * 120.00103 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47205 * 89.99739 * 24 22 20 26 26 H 1.48497 * 109.47288 * 210.00156 * 24 22 20 27 27 H 1.48505 * 109.47294 * 330.00048 * 24 22 20 28 28 C 1.47574 * 91.01855 * 24.64007 * 19 18 17 29 29 H 1.08993 * 109.47123 * 299.99438 * 1 2 3 30 30 H 1.08997 * 109.47242 * 60.00100 * 1 2 3 31 31 H 1.09003 * 109.46600 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46829 * 240.00612 * 2 1 3 33 33 H 1.08991 * 109.47215 * 120.00341 * 2 1 3 34 34 H 1.08001 * 126.57997 * 0.04137 * 7 6 4 35 35 H 1.09000 * 110.50981 * 359.97438 * 11 9 8 36 36 H 1.08997 * 110.50975 * 122.57362 * 11 9 8 37 37 H 1.09000 * 110.37623 * 142.80830 * 12 11 9 38 38 H 1.09001 * 110.37345 * 265.03853 * 12 11 9 39 39 H 1.09005 * 110.37002 * 281.68159 * 14 13 12 40 40 H 1.08991 * 110.37310 * 159.34348 * 14 13 12 41 41 H 1.09001 * 112.94296 * 354.05360 * 17 3 2 42 42 H 1.09006 * 113.76397 * 336.35326 * 18 17 3 43 43 H 1.09003 * 113.77174 * 107.74281 * 18 17 3 44 44 H 0.96999 * 119.99548 * 180.02562 * 23 22 20 45 45 H 1.09000 * 113.76754 * 221.06045 * 28 19 18 46 46 H 1.09000 * 113.87436 * 89.67685 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1364 2.0543 -1.1616 5 8 2.6303 3.1653 -1.1730 6 6 1.6665 1.4430 -2.4194 7 6 1.6490 2.0485 -3.6437 8 7 1.1515 1.1498 -4.5167 9 6 0.9473 1.3487 -5.9538 10 1 0.1312 0.7217 -6.3130 11 6 2.2467 1.0447 -6.7325 12 6 2.5966 2.3848 -7.4166 13 8 1.9531 3.3921 -6.6059 14 6 0.6657 2.8365 -6.2595 15 7 0.8622 -0.0101 -3.7841 16 7 1.1779 0.1982 -2.5533 17 6 2.3839 2.0289 1.2622 18 6 1.8997 3.4859 1.3744 19 7 3.2243 3.7756 1.9569 20 6 3.7132 4.7409 2.7963 21 1 4.7549 4.7316 3.0813 22 6 2.8701 5.7319 3.2801 23 7 1.6009 5.7441 2.9316 24 14 3.5370 7.0489 4.4246 25 1 4.0238 8.2007 3.6234 26 1 2.4586 7.5024 5.3391 27 1 4.6592 6.4906 5.2211 28 6 3.8105 2.6075 1.2715 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.9737 3.0535 -3.8694 35 1 3.0412 0.7468 -6.0482 36 1 2.0730 0.2674 -7.4766 37 1 3.6760 2.5365 -7.4244 38 1 2.2039 2.4057 -8.4332 39 1 -0.0248 2.9274 -7.0981 40 1 0.2619 3.3351 -5.3785 41 1 2.1521 1.4191 2.1354 42 1 1.7283 3.9672 0.4115 43 1 1.0735 3.6218 2.0723 44 1 1.0119 6.4368 3.2694 45 1 4.5099 2.0422 1.8873 46 1 4.2012 2.8291 0.2783 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957111572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:48 Heat of formation + Delta-G solvation = 82.808158 kcal Electronic energy + Delta-G solvation = -29790.757675 eV Core-core repulsion = 25720.187523 eV Total energy + Delta-G solvation = -4070.570152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.40847 -41.33902 -40.38743 -38.52721 -36.76053 -35.46267 -34.13636 -32.39053 -31.71750 -31.20963 -29.91513 -29.20677 -26.55349 -26.18059 -24.87466 -24.53345 -23.71733 -23.38697 -21.93456 -21.79467 -20.27389 -18.71511 -18.52351 -17.71119 -17.39118 -17.10310 -17.07675 -16.83651 -16.66491 -16.01146 -15.88320 -15.77147 -15.41767 -15.29467 -14.72871 -14.38270 -14.08638 -13.93316 -13.78183 -13.66156 -13.43708 -13.32721 -12.98165 -12.90789 -12.81274 -12.65483 -12.57187 -12.43263 -12.29282 -12.22435 -11.95453 -11.92659 -11.65576 -11.45402 -11.36643 -11.01112 -10.82613 -10.61215 -10.33902 -9.48062 -8.85878 -7.87519 -5.21172 0.06870 0.63159 0.95076 1.44571 1.48623 1.57021 1.94958 2.24136 2.51170 2.74000 3.10387 3.24387 3.31199 3.34638 3.53110 3.58470 3.77768 3.87561 3.89978 3.95288 4.12472 4.16726 4.29330 4.30076 4.39829 4.54078 4.56281 4.59572 4.63537 4.72340 4.76012 4.80162 4.87653 4.89384 4.96257 5.06322 5.16566 5.26886 5.35000 5.37624 5.48555 5.51981 5.67465 5.91143 5.95141 6.45623 6.85359 6.93569 7.20795 7.62200 8.60241 9.29810 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.002990 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.312221 B = 9362.476152 C =10544.006651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.102 3.898 3 N -0.587 5.587 4 C 0.590 3.410 5 O -0.559 6.559 6 C -0.112 4.112 7 C 0.105 3.895 8 N -0.342 5.342 9 C 0.108 3.892 10 H 0.158 0.842 11 C -0.158 4.158 12 C 0.040 3.960 13 O -0.396 6.396 14 C 0.033 3.967 15 N -0.076 5.076 16 N -0.200 5.200 17 C 0.124 3.876 18 C 0.157 3.843 19 N -0.631 5.631 20 C -0.234 4.234 21 H 0.084 0.916 22 C -0.070 4.070 23 N -0.954 5.954 24 Si 0.984 3.016 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.264 1.264 28 C 0.113 3.887 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.207 0.793 35 H 0.068 0.932 36 H 0.129 0.871 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.093 0.907 41 H 0.130 0.870 42 H 0.026 0.974 43 H 0.036 0.964 44 H 0.248 0.752 45 H 0.059 0.941 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.652 -15.966 -24.040 29.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.020 4.020 3 N -0.318 5.318 4 C 0.377 3.623 5 O -0.436 6.436 6 C -0.250 4.250 7 C -0.052 4.052 8 N -0.127 5.127 9 C 0.007 3.993 10 H 0.176 0.824 11 C -0.197 4.197 12 C -0.036 4.036 13 O -0.315 6.315 14 C -0.045 4.045 15 N -0.056 5.056 16 N -0.074 5.074 17 C 0.020 3.980 18 C 0.030 3.970 19 N -0.358 5.358 20 C -0.362 4.362 21 H 0.102 0.898 22 C -0.263 4.263 23 N -0.603 5.603 24 Si 0.812 3.188 25 H -0.217 1.217 26 H -0.217 1.217 27 H -0.189 1.189 28 C -0.013 4.013 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.113 0.887 34 H 0.223 0.777 35 H 0.087 0.913 36 H 0.147 0.853 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.112 0.888 41 H 0.147 0.853 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.858 -16.372 -23.884 29.213 hybrid contribution 0.491 2.035 0.577 2.171 sum -3.366 -14.337 -23.307 27.570 Atomic orbital electron populations 1.21993 0.95445 1.02774 1.00534 1.22037 0.95154 0.80118 1.04680 1.47919 1.63601 1.15196 1.05051 1.17219 0.78256 0.84204 0.82665 1.90866 1.45631 1.20745 1.86392 1.21288 1.14763 0.93636 0.95349 1.23363 0.95323 0.98003 0.88517 1.50743 1.42031 1.10034 1.09903 1.23547 1.02166 1.00789 0.72767 0.82430 1.23465 0.95126 1.00604 1.00487 1.23708 0.99746 0.84780 0.95354 1.89250 1.29913 1.41214 1.71082 1.24033 0.87695 0.89278 1.03445 1.81866 1.21607 1.05042 0.97050 1.74741 1.08737 1.13838 1.10120 1.23515 0.95537 0.93352 0.85644 1.22457 0.89258 0.90310 0.94933 1.46033 1.08005 1.30389 1.51336 1.19444 0.94698 1.03792 1.18307 0.89806 1.25710 0.96195 1.01368 1.03022 1.70060 1.04834 1.35962 1.49436 0.84995 0.77214 0.78637 0.77967 1.21670 1.21710 1.18867 1.23004 0.95407 0.87462 0.95464 0.93831 0.94246 0.89512 0.88051 0.88654 0.77655 0.91341 0.85286 0.88366 0.88633 0.85862 0.88850 0.85278 0.95656 0.94523 0.94359 0.92299 0.94482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.63 71.98 0.69 -3.04 16 2 C 0.10 2.68 5.71 86.38 0.49 3.17 16 3 N -0.59 -20.66 2.74 -807.30 -2.22 -22.88 16 4 C 0.59 22.49 7.05 86.69 0.61 23.10 16 5 O -0.56 -26.20 12.57 -3.99 -0.05 -26.25 16 6 C -0.11 -3.40 6.36 40.82 0.26 -3.14 16 7 C 0.11 2.61 10.05 83.85 0.84 3.46 16 8 N -0.34 -6.48 3.53 -321.71 -1.14 -7.61 16 9 C 0.11 1.04 4.28 46.00 0.20 1.24 16 10 H 0.16 0.67 8.14 -2.38 -0.02 0.65 16 11 C -0.16 -1.16 6.88 31.61 0.22 -0.94 16 12 C 0.04 0.32 7.63 72.48 0.55 0.87 16 13 O -0.40 -5.92 11.65 -148.98 -1.74 -7.66 16 14 C 0.03 0.32 6.64 72.48 0.48 0.81 16 15 N -0.08 -1.78 13.78 37.02 0.51 -1.27 16 16 N -0.20 -5.42 7.28 -49.99 -0.36 -5.78 16 17 C 0.12 5.13 4.58 46.75 0.21 5.35 16 18 C 0.16 8.48 6.78 86.48 0.59 9.07 16 19 N -0.63 -36.14 3.70 -717.44 -2.65 -38.79 16 20 C -0.23 -14.25 10.70 84.03 0.90 -13.35 16 21 H 0.08 4.85 7.83 -2.91 -0.02 4.83 16 22 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 23 N -0.95 -61.61 11.38 21.65 0.25 -61.36 16 24 Si 0.98 48.44 29.55 68.60 2.03 50.46 16 25 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 27 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 28 C 0.11 5.25 8.27 86.48 0.72 5.97 16 29 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.04 1.10 6.53 -2.39 -0.02 1.09 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.10 2.59 5.60 -2.39 -0.01 2.58 16 33 H 0.10 2.09 7.94 -2.39 -0.02 2.07 16 34 H 0.21 4.96 7.77 -2.91 -0.02 4.93 16 35 H 0.07 0.83 7.97 -2.39 -0.02 0.81 16 36 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 39 H 0.12 0.42 8.14 -2.38 -0.02 0.40 16 40 H 0.09 1.18 7.30 -2.39 -0.02 1.17 16 41 H 0.13 4.75 7.98 -2.39 -0.02 4.74 16 42 H 0.03 1.53 5.69 -2.38 -0.01 1.51 16 43 H 0.04 2.16 7.16 -2.39 -0.02 2.15 16 44 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 45 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.04 1.85 6.32 -2.39 -0.02 1.84 16 Total: -1.00 -83.64 369.10 2.86 -80.78 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 1.00 Total: 11.62 kcal Atomic # 6 Polarization: 21.51 SS G_CDS: 7.23 Total: 28.74 kcal Atomic # 7 Polarization: -132.08 SS G_CDS: -5.61 Total: -137.69 kcal Atomic # 8 Polarization: -32.12 SS G_CDS: -1.79 Total: -33.91 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.46 kcal Total: -83.64 2.86 -80.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957111572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.592 kcal (2) G-P(sol) polarization free energy of solvation -83.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds