Wall clock time and date at job start Tue Mar 31 2020 20:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47074 * 2 1 4 4 C 1.34775 * 120.00119 * 272.73455 * 3 2 1 5 5 O 1.21588 * 120.00196 * 185.72259 * 4 3 2 6 6 C 1.47531 * 119.99950 * 5.72081 * 4 3 2 7 7 C 1.36592 * 125.76890 * 185.71525 * 6 4 3 8 8 N 1.34809 * 106.83805 * 179.97438 * 7 6 4 9 9 C 1.46508 * 126.59309 * 179.97438 * 8 7 6 10 10 H 1.09004 * 110.45603 * 152.39528 * 9 8 7 11 11 C 1.54507 * 110.51212 * 274.99919 * 9 8 7 12 12 C 1.54479 * 104.06310 * 118.64414 * 11 9 8 13 13 O 1.44429 * 104.80139 * 23.98177 * 12 11 9 14 14 C 1.44426 * 105.27514 * 319.48553 * 13 12 11 15 15 N 1.40207 * 106.81269 * 359.97438 * 8 7 6 16 16 N 1.28758 * 108.36656 * 359.74905 * 15 8 7 17 17 C 1.46500 * 119.99825 * 92.73313 * 3 2 1 18 18 C 1.53947 * 113.83873 * 141.35360 * 17 3 2 19 19 N 1.47583 * 86.11708 * 90.75199 * 18 17 3 20 20 C 1.36938 * 134.49163 * 204.64241 * 19 18 17 21 21 H 1.08001 * 119.99641 * 179.97438 * 20 19 18 22 22 C 1.38806 * 119.99779 * 359.97438 * 20 19 18 23 23 N 1.31619 * 120.00401 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99884 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47361 * 89.99620 * 24 22 20 26 26 H 1.48503 * 109.47115 * 209.99744 * 24 22 20 27 27 H 1.48504 * 109.46736 * 329.99550 * 24 22 20 28 28 C 1.47585 * 91.01414 * 24.63976 * 19 18 17 29 29 H 1.09001 * 109.47340 * 60.00284 * 1 2 3 30 30 H 1.09009 * 109.47106 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47027 * 299.99362 * 1 2 3 32 32 H 1.09007 * 109.46717 * 240.00251 * 2 1 3 33 33 H 1.09001 * 109.47244 * 120.00496 * 2 1 3 34 34 H 1.08002 * 126.58036 * 359.97438 * 7 6 4 35 35 H 1.08996 * 110.51291 * 237.28868 * 11 9 8 36 36 H 1.08999 * 110.51153 * 359.86322 * 11 9 8 37 37 H 1.08995 * 110.36945 * 142.80680 * 12 11 9 38 38 H 1.08991 * 110.37478 * 265.03710 * 12 11 9 39 39 H 1.09003 * 110.37328 * 281.68732 * 14 13 12 40 40 H 1.08998 * 110.37464 * 159.34478 * 14 13 12 41 41 H 1.08996 * 112.94339 * 9.66385 * 17 3 2 42 42 H 1.08998 * 113.76820 * 205.05044 * 18 17 3 43 43 H 1.08995 * 113.76558 * 336.44810 * 18 17 3 44 44 H 0.96998 * 120.00484 * 180.02562 * 23 22 20 45 45 H 1.09001 * 113.76859 * 221.05856 * 28 19 18 46 46 H 1.08997 * 113.77028 * 89.66198 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1905 2.0352 -1.1658 5 8 2.6930 3.1423 -1.1735 6 6 1.7692 1.4076 -2.4328 7 6 1.9856 1.9111 -3.6839 8 7 1.4466 1.0357 -4.5559 9 6 1.4340 1.1530 -6.0162 10 1 1.3978 0.1660 -6.4774 11 6 0.2360 2.0115 -6.4801 12 6 0.8907 3.2137 -7.1960 13 8 2.1882 2.7341 -7.6111 14 6 2.6707 1.9380 -6.5069 15 7 0.9003 -0.0088 -3.7965 16 7 1.1135 0.2404 -2.5514 17 6 2.3195 2.0516 1.2673 18 6 3.5684 2.9503 1.2144 19 7 2.6466 4.0376 0.8320 20 6 2.7828 5.2139 0.1444 21 1 1.9261 5.8542 -0.0054 22 6 4.0221 5.5833 -0.3601 23 7 5.0663 4.8032 -0.1772 24 14 4.2081 7.1883 -1.2976 25 1 4.5463 8.2794 -0.3488 26 1 5.2933 7.0519 -2.3022 27 1 2.9327 7.5094 -1.9871 28 6 1.5189 3.3478 1.4884 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.4915 2.8337 -3.9278 35 1 -0.3910 1.4498 -7.1724 36 1 -0.3482 2.3466 -5.6231 37 1 0.2992 3.5067 -8.0634 38 1 0.9965 4.0530 -6.5088 39 1 3.0513 2.5810 -5.7132 40 1 3.4466 1.2511 -6.8448 41 1 2.3022 1.3742 2.1210 42 1 4.0444 3.0985 2.1837 43 1 4.2738 2.6762 0.4300 44 1 5.9324 5.0615 -0.5294 45 1 0.5882 3.3912 0.9228 46 1 1.3929 3.6127 2.5381 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957111573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:10:52 Heat of formation + Delta-G solvation = 116.167835 kcal Electronic energy + Delta-G solvation = -30804.016532 eV Core-core repulsion = 26734.892965 eV Total energy + Delta-G solvation = -4069.123568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.33244 -41.12895 -40.43718 -38.00842 -36.49494 -35.52521 -33.85051 -32.26360 -31.56820 -30.91881 -29.95681 -29.05526 -26.40136 -26.06829 -24.83326 -24.31027 -23.84453 -23.36128 -21.87303 -21.68083 -19.77634 -18.56624 -18.43623 -17.76637 -17.48316 -16.86298 -16.72743 -16.61185 -16.35602 -16.08510 -15.73451 -15.50500 -15.37421 -15.11330 -14.55360 -14.44955 -14.34336 -14.10235 -13.69259 -13.46267 -13.24964 -13.14058 -13.05354 -12.88456 -12.73061 -12.61983 -12.47753 -12.39710 -12.11931 -12.05487 -11.87336 -11.74377 -11.43611 -11.25575 -11.13544 -11.03270 -10.68926 -10.23047 -10.18050 -9.22903 -8.40307 -7.59999 -4.83904 0.11030 0.83736 0.92361 1.45404 1.46854 1.54007 2.22698 2.61855 2.63379 2.72335 3.11283 3.26043 3.31611 3.54423 3.61092 3.65379 3.73768 3.85481 3.96012 4.01755 4.07687 4.18749 4.29229 4.47768 4.49840 4.54713 4.61077 4.67190 4.69712 4.70875 4.79765 4.81975 4.85000 4.89672 4.99183 5.13998 5.26014 5.29601 5.37955 5.49225 5.56300 5.59626 5.73463 6.13420 6.26976 6.73491 6.95662 7.18310 7.73614 7.93037 8.87237 9.58653 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009643 B = 0.005163 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.884323 B = 5421.646064 C = 7742.935609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.114 3.886 3 N -0.590 5.590 4 C 0.547 3.453 5 O -0.459 6.459 6 C -0.100 4.100 7 C 0.086 3.914 8 N -0.343 5.343 9 C 0.115 3.885 10 H 0.151 0.849 11 C -0.158 4.158 12 C 0.038 3.962 13 O -0.375 6.375 14 C 0.034 3.966 15 N -0.081 5.081 16 N -0.201 5.201 17 C 0.123 3.877 18 C 0.157 3.843 19 N -0.606 5.606 20 C -0.174 4.174 21 H 0.058 0.942 22 C -0.052 4.052 23 N -0.945 5.945 24 Si 0.950 3.050 25 H -0.295 1.295 26 H -0.300 1.300 27 H -0.279 1.279 28 C 0.103 3.897 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.201 0.799 35 H 0.122 0.878 36 H 0.077 0.923 37 H 0.124 0.876 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.021 0.979 43 H 0.040 0.960 44 H 0.234 0.766 45 H 0.032 0.968 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.659 -13.162 -10.956 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.009 4.009 3 N -0.325 5.325 4 C 0.330 3.670 5 O -0.326 6.326 6 C -0.239 4.239 7 C -0.071 4.071 8 N -0.129 5.129 9 C 0.014 3.986 10 H 0.168 0.832 11 C -0.197 4.197 12 C -0.039 4.039 13 O -0.293 6.293 14 C -0.044 4.044 15 N -0.061 5.061 16 N -0.075 5.075 17 C 0.018 3.982 18 C 0.031 3.969 19 N -0.332 5.332 20 C -0.303 4.303 21 H 0.075 0.925 22 C -0.244 4.244 23 N -0.597 5.597 24 Si 0.782 3.218 25 H -0.223 1.223 26 H -0.227 1.227 27 H -0.205 1.205 28 C -0.023 4.023 29 H 0.055 0.945 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.217 0.783 35 H 0.140 0.860 36 H 0.096 0.904 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.039 0.961 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.050 0.950 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.879 -13.574 -11.474 20.839 hybrid contribution 0.811 2.190 -0.306 2.355 sum -10.068 -11.384 -11.780 19.228 Atomic orbital electron populations 1.21977 0.95423 1.02296 1.00625 1.21771 0.95067 0.80574 1.03446 1.47371 1.66450 1.14611 1.04063 1.17583 0.80989 0.85701 0.82754 1.91468 1.38754 1.17371 1.85039 1.21788 1.10293 0.96296 0.95498 1.23252 0.97444 0.97299 0.89060 1.50537 1.38481 1.15536 1.08390 1.23347 0.98015 1.04751 0.72525 0.83151 1.23411 0.97024 0.97029 1.02223 1.23658 0.83643 0.95636 1.00925 1.89217 1.34143 1.68100 1.37817 1.23919 0.95432 0.94339 0.90684 1.81835 1.19335 1.08743 0.96158 1.74788 1.10258 1.12248 1.10209 1.22784 0.96258 0.93300 0.85879 1.22377 0.93162 0.85517 0.95887 1.45760 1.06020 1.21353 1.60029 1.18752 0.93345 0.94037 1.24144 0.92451 1.25032 0.95769 1.00525 1.03071 1.69980 0.98915 1.38283 1.52492 0.85480 0.76595 0.81195 0.78502 1.22286 1.22719 1.20481 1.23170 0.92075 0.90861 0.96192 0.94478 0.90266 0.93139 0.90098 0.88906 0.78270 0.86003 0.90409 0.85828 0.92276 0.91729 0.85323 0.85549 0.96101 0.94119 0.95718 0.94975 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.65 71.98 0.69 -2.85 16 2 C 0.11 3.06 5.70 86.38 0.49 3.55 16 3 N -0.59 -21.14 2.73 -807.24 -2.20 -23.34 16 4 C 0.55 22.90 7.18 86.69 0.62 23.52 16 5 O -0.46 -23.86 10.38 -3.99 -0.04 -23.91 16 6 C -0.10 -3.46 6.52 40.82 0.27 -3.20 16 7 C 0.09 2.55 10.28 83.85 0.86 3.41 16 8 N -0.34 -8.10 3.54 -321.71 -1.14 -9.24 16 9 C 0.11 1.80 4.28 46.01 0.20 2.00 16 10 H 0.15 1.71 8.14 -2.38 -0.02 1.69 16 11 C -0.16 -2.10 6.88 31.61 0.22 -1.88 16 12 C 0.04 0.54 7.63 72.48 0.55 1.10 16 13 O -0.37 -6.95 11.65 -148.98 -1.74 -8.68 16 14 C 0.03 0.57 7.18 72.49 0.52 1.09 16 15 N -0.08 -2.23 13.78 37.02 0.51 -1.72 16 16 N -0.20 -6.18 7.16 -49.99 -0.36 -6.54 16 17 C 0.12 4.54 4.72 46.75 0.22 4.76 16 18 C 0.16 7.69 6.45 86.48 0.56 8.25 16 19 N -0.61 -32.09 2.10 -717.32 -1.50 -33.60 16 20 C -0.17 -10.27 8.75 84.03 0.73 -9.54 16 21 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 22 C -0.05 -3.12 4.99 84.86 0.42 -2.69 16 23 N -0.95 -59.70 11.38 21.65 0.25 -59.45 16 24 Si 0.95 48.83 29.55 68.60 2.03 50.86 16 25 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 26 H -0.30 -15.51 7.11 99.48 0.71 -14.80 16 27 H -0.28 -13.78 7.11 99.48 0.71 -13.08 16 28 C 0.10 4.30 8.42 86.48 0.73 5.02 16 29 H 0.04 1.07 6.53 -2.39 -0.02 1.06 16 30 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 2.31 5.70 -2.38 -0.01 2.29 16 33 H 0.09 2.00 7.91 -2.39 -0.02 1.98 16 34 H 0.20 5.88 6.88 -2.91 -0.02 5.86 16 35 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.28 7.96 -2.39 -0.02 1.27 16 37 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 1.27 5.97 -2.39 -0.01 1.26 16 40 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.13 3.53 7.93 -2.39 -0.02 3.52 16 42 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.04 2.31 6.33 -2.39 -0.02 2.30 16 44 H 0.23 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -78.58 364.99 3.89 -74.69 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.00 Total: 8.38 kcal Atomic # 6 Polarization: 25.46 SS G_CDS: 7.09 Total: 32.55 kcal Atomic # 7 Polarization: -129.44 SS G_CDS: -4.45 Total: -133.89 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -1.78 Total: -32.59 kcal Atomic # 14 Polarization: 48.83 SS G_CDS: 2.03 Total: 50.86 kcal Total: -78.58 3.89 -74.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957111573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.860 kcal (2) G-P(sol) polarization free energy of solvation -78.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds