Wall clock time and date at job start Tue Mar 31 2020 18:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46737 * 2 1 4 4 C 1.50697 * 109.47160 * 120.00257 * 2 1 3 5 5 O 1.21285 * 120.00055 * 33.72386 * 4 2 1 6 6 N 1.34776 * 119.99685 * 213.71994 * 4 2 1 7 7 C 1.47079 * 125.63173 * 355.16980 * 6 4 2 8 8 C 1.54465 * 107.29699 * 179.00195 * 7 6 4 9 9 C 1.54370 * 102.86410 * 338.49489 * 8 7 6 10 10 C 1.47576 * 125.62538 * 175.14828 * 6 4 2 11 11 C 1.52369 * 110.37436 * 152.42249 * 9 8 7 12 12 N 1.47331 * 108.44016 * 73.37203 * 11 9 8 13 13 C 1.36935 * 121.07859 * 229.16161 * 12 11 9 14 14 H 1.07996 * 120.00464 * 153.34044 * 13 12 11 15 15 C 1.38821 * 120.00005 * 333.33723 * 13 12 11 16 16 N 1.31617 * 119.99798 * 160.25427 * 15 13 12 17 17 Si 1.86796 * 119.99783 * 340.25932 * 15 13 12 18 18 H 1.48501 * 109.47174 * 89.30687 * 17 15 13 19 19 H 1.48501 * 109.46863 * 209.30471 * 17 15 13 20 20 H 1.48491 * 109.47248 * 329.30110 * 17 15 13 21 21 C 1.47235 * 117.79565 * 49.16637 * 12 11 9 22 22 C 1.53277 * 108.58951 * 308.79406 * 21 12 11 23 23 O 1.41885 * 110.72002 * 276.30610 * 9 8 7 24 24 N 1.46498 * 109.46702 * 240.00391 * 2 1 3 25 25 C 1.34423 * 126.82970 * 324.99692 * 24 2 1 26 26 N 1.30831 * 108.08491 * 179.97438 * 25 24 2 27 27 C 1.33250 * 109.82305 * 359.97438 * 26 25 24 28 28 N 1.30706 * 108.94570 * 359.75371 * 27 26 25 29 29 H 1.08990 * 109.47262 * 60.38402 * 1 2 3 30 30 H 1.09006 * 109.46604 * 180.38150 * 1 2 3 31 31 H 1.08997 * 109.46726 * 300.37860 * 1 2 3 32 32 H 1.08996 * 109.88194 * 59.57481 * 7 6 4 33 33 H 1.09005 * 109.88237 * 298.42256 * 7 6 4 34 34 H 1.09005 * 110.72836 * 220.15725 * 8 7 6 35 35 H 1.08997 * 110.88790 * 96.91775 * 8 7 6 36 36 H 1.08996 * 110.38299 * 84.50038 * 10 6 4 37 37 H 1.08997 * 110.37653 * 322.14822 * 10 6 4 38 38 H 1.09001 * 109.67762 * 193.12078 * 11 9 8 39 39 H 1.09003 * 109.67614 * 313.62364 * 11 9 8 40 40 H 0.97003 * 119.99703 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.61140 * 189.06744 * 21 12 11 42 42 H 1.09001 * 109.76910 * 68.61739 * 21 12 11 43 43 H 1.09004 * 109.51129 * 293.07120 * 22 21 12 44 44 H 1.08996 * 109.51348 * 172.92228 * 22 21 12 45 45 H 1.08009 * 125.95484 * 359.97438 * 25 24 2 46 46 H 1.07995 * 125.52473 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.4109 -1.6470 1.6861 6 7 3.1724 -0.3051 1.8243 7 6 4.0729 0.7446 1.3239 8 6 5.2283 0.8812 2.3400 9 6 4.6249 0.2833 3.6290 10 6 3.7228 -0.8411 3.0843 11 6 5.7249 -0.2933 4.5117 12 7 6.4662 0.8240 5.1222 13 6 7.8344 0.8674 5.0874 14 1 8.3458 1.8178 5.1274 15 6 8.5642 -0.3103 5.0007 16 7 9.8118 -0.2820 4.5824 17 14 7.7755 -1.9350 5.4775 18 1 7.1142 -2.5318 4.2893 19 1 8.8196 -2.8631 5.9811 20 1 6.7658 -1.7018 6.5411 21 6 5.6871 1.8918 5.7708 22 6 4.6140 2.3782 4.7904 23 8 3.8592 1.2557 4.3227 24 7 2.0183 -0.6905 -1.1962 25 6 1.4559 -1.7517 -1.8000 26 7 2.1932 -2.0691 -2.8331 27 6 3.2299 -1.2367 -2.9212 28 7 3.1634 -0.3711 -1.9441 29 1 -0.3633 0.5078 -0.8933 30 1 -0.3633 -1.0277 0.0068 31 1 -0.3633 0.5197 0.8866 32 1 3.5342 1.6889 1.2460 33 1 4.4686 0.4598 0.3490 34 1 5.4910 1.9289 2.4868 35 1 6.0980 0.3080 2.0189 36 1 4.3101 -1.7386 2.8906 37 1 2.9189 -1.0571 3.7881 38 1 5.2824 -0.9108 5.2933 39 1 6.4024 -0.8963 3.9071 40 1 10.3217 -1.1049 4.5215 41 1 6.3469 2.7194 6.0314 42 1 5.2112 1.5055 6.6722 43 1 5.0912 2.8738 3.9448 44 1 3.9494 3.0786 5.2961 45 1 0.5528 -2.2546 -1.4868 46 1 3.9984 -1.2695 -3.6793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972349625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:15 Heat of formation + Delta-G solvation = 64.757349 kcal Electronic energy + Delta-G solvation = -30549.848484 eV Core-core repulsion = 26478.495590 eV Total energy + Delta-G solvation = -4071.352894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39133 -40.60074 -39.22416 -36.51305 -35.21377 -34.76509 -31.89476 -31.67691 -31.59906 -30.27049 -29.89851 -28.06386 -26.48245 -24.88910 -23.84832 -23.30102 -22.30007 -21.92693 -21.20056 -19.71112 -19.21596 -17.90274 -17.44373 -17.27006 -16.45211 -16.03026 -15.72859 -15.45799 -15.01558 -14.96344 -14.82004 -14.42423 -14.24431 -14.07565 -13.88221 -13.41372 -13.14909 -13.10637 -12.82184 -12.60933 -12.59413 -12.45995 -12.39273 -11.93160 -11.83674 -11.60727 -11.21771 -11.14562 -10.88840 -10.79993 -10.48795 -10.31148 -10.26443 -10.01533 -9.85719 -9.68450 -9.61981 -9.47177 -8.77148 -8.67121 -7.12749 -6.08070 -3.46212 1.29699 1.59755 2.56576 2.73022 2.81000 3.19597 3.39915 3.41129 3.83073 3.98893 4.07434 4.10189 4.38840 4.45057 4.55609 4.62139 4.63263 4.92590 4.99095 5.05518 5.08559 5.17133 5.21008 5.27776 5.47767 5.53327 5.53944 5.60535 5.70038 5.71962 5.81214 5.94239 5.97409 6.02453 6.05740 6.17565 6.19754 6.27854 6.35392 6.38423 6.46747 6.60374 7.27986 7.55899 7.73704 7.78354 7.84247 8.17661 8.74054 9.55491 9.91545 11.07401 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.003582 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.858429 B = 7815.155652 C = 8494.907941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.122 0.878 4 C 0.520 3.480 5 O -0.530 6.530 6 N -0.598 5.598 7 C 0.099 3.901 8 C -0.143 4.143 9 C 0.095 3.905 10 C 0.120 3.880 11 C 0.111 3.889 12 N -0.604 5.604 13 C -0.262 4.262 14 H 0.090 0.910 15 C 0.028 3.972 16 N -0.904 5.904 17 Si 0.877 3.123 18 H -0.287 1.287 19 H -0.300 1.300 20 H -0.270 1.270 21 C 0.112 3.888 22 C 0.044 3.956 23 O -0.370 6.370 24 N -0.372 5.372 25 C 0.268 3.732 26 N -0.546 5.546 27 C 0.201 3.799 28 N -0.315 5.315 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.035 0.965 39 H 0.086 0.914 40 H 0.265 0.735 41 H 0.073 0.927 42 H 0.032 0.968 43 H 0.053 0.947 44 H 0.089 0.911 45 H 0.218 0.782 46 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.556 3.424 -10.264 20.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.038 3.962 3 H 0.140 0.860 4 C 0.304 3.696 5 O -0.406 6.406 6 N -0.330 5.330 7 C -0.023 4.023 8 C -0.181 4.181 9 C 0.053 3.947 10 C -0.003 4.003 11 C -0.016 4.016 12 N -0.329 5.329 13 C -0.390 4.390 14 H 0.107 0.893 15 C -0.172 4.172 16 N -0.546 5.546 17 Si 0.707 3.293 18 H -0.215 1.215 19 H -0.228 1.228 20 H -0.195 1.195 21 C -0.014 4.014 22 C -0.034 4.034 23 O -0.289 6.289 24 N -0.164 5.164 25 C -0.029 4.029 26 N -0.273 5.273 27 C -0.102 4.102 28 N -0.141 5.141 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.112 0.888 35 H 0.110 0.890 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.053 0.947 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.050 0.950 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.234 0.766 46 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -17.507 3.162 -10.077 20.446 hybrid contribution -0.034 -0.908 0.454 1.016 sum -17.541 2.254 -9.624 20.134 Atomic orbital electron populations 1.22056 0.89696 1.04988 1.04395 1.21414 0.96963 0.97921 0.79880 0.86010 1.20108 0.80126 0.84314 0.85010 1.90732 1.56742 1.27788 1.65367 1.48545 1.21805 1.38086 1.24598 1.22262 0.91174 0.90287 0.98588 1.23043 0.97038 1.04113 0.93907 1.22357 0.91470 0.89140 0.91729 1.22194 0.97638 0.95697 0.84722 1.21764 0.92839 0.91711 0.95248 1.44377 1.02902 1.22538 1.63068 1.18879 0.78834 0.94312 1.46960 0.89292 1.25245 0.95127 0.97569 0.99261 1.69805 1.09658 1.27864 1.47301 0.87090 0.78276 0.84761 0.79140 1.21456 1.22756 1.19539 1.21637 0.93254 0.92735 0.93760 1.23158 0.94753 0.87787 0.97669 1.87665 1.34910 1.32352 1.73973 1.50393 1.19623 1.24664 1.21750 1.26067 0.99285 0.87967 0.89582 1.70623 1.07126 1.28992 1.20515 1.26073 0.97189 0.89773 0.97132 1.78105 1.03027 1.24813 1.08203 0.90373 0.90019 0.89069 0.91344 0.90401 0.88827 0.89037 0.89696 0.89219 0.94676 0.89654 0.92546 0.90835 0.95004 0.92877 0.89335 0.76571 0.76489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 8.50 37.16 0.32 -0.75 16 2 C 0.14 1.44 3.38 -69.08 -0.23 1.21 16 3 H 0.12 1.09 6.95 -51.93 -0.36 0.73 16 4 C 0.52 7.08 7.19 -10.99 -0.08 7.00 16 5 O -0.53 -8.58 16.55 5.55 0.09 -8.48 16 6 N -0.60 -8.59 3.33 -170.77 -0.57 -9.16 16 7 C 0.10 1.30 6.22 -2.96 -0.02 1.28 16 8 C -0.14 -2.23 5.87 -25.25 -0.15 -2.38 16 9 C 0.10 1.63 0.84 -89.65 -0.08 1.56 16 10 C 0.12 1.93 6.07 -2.88 -0.02 1.91 16 11 C 0.11 2.30 3.04 -3.91 -0.01 2.29 16 12 N -0.60 -13.50 2.76 -172.18 -0.48 -13.97 16 13 C -0.26 -6.90 10.11 -15.06 -0.15 -7.05 16 14 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 15 C 0.03 0.76 5.26 -17.43 -0.09 0.67 16 16 N -0.90 -26.64 13.97 55.49 0.78 -25.87 16 17 Si 0.88 21.65 24.26 -169.99 -4.12 17.53 16 18 H -0.29 -6.77 6.49 56.52 0.37 -6.40 16 19 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 20 H -0.27 -6.63 6.68 56.52 0.38 -6.26 16 21 C 0.11 2.05 6.71 -3.50 -0.02 2.03 16 22 C 0.04 0.67 6.78 37.30 0.25 0.92 16 23 O -0.37 -6.23 10.28 -35.22 -0.36 -6.60 16 24 N -0.37 -4.13 3.53 -57.24 -0.20 -4.34 16 25 C 0.27 2.80 11.78 -90.66 -1.07 1.73 16 26 N -0.55 -6.52 11.19 -15.83 -0.18 -6.69 16 27 C 0.20 2.24 13.03 -91.81 -1.20 1.04 16 28 N -0.31 -3.86 12.70 29.29 0.37 -3.49 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.57 6.94 -51.93 -0.36 0.21 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.77 7.64 -51.93 -0.40 0.38 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.09 1.45 6.07 -51.93 -0.32 1.13 16 35 H 0.09 1.57 7.82 -51.93 -0.41 1.16 16 36 H 0.08 1.39 7.99 -51.93 -0.42 0.97 16 37 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 38 H 0.04 0.76 6.85 -51.93 -0.36 0.40 16 39 H 0.09 1.92 4.47 -51.93 -0.23 1.69 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 1.29 7.96 -51.93 -0.41 0.88 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.80 6.22 -51.93 -0.32 0.47 16 44 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.22 1.54 7.33 -52.48 -0.38 1.15 16 46 H 0.22 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 363.10 15.07 5.47 5.47 Total: -1.00 -33.45 363.10 -8.28 -41.73 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -6.54 Total: 2.40 kcal Atomic # 6 Polarization: 14.01 SS G_CDS: -2.55 Total: 11.46 kcal Atomic # 7 Polarization: -63.24 SS G_CDS: -0.28 Total: -63.51 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.27 Total: -15.08 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.12 Total: 17.53 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.45 -8.28 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972349625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.490 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds