Wall clock time and date at job start Tue Mar 31 2020 18:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46737 * 2 1 4 4 C 1.50697 * 109.47160 * 120.00257 * 2 1 3 5 5 O 1.21285 * 120.00055 * 33.72386 * 4 2 1 6 6 N 1.34776 * 119.99685 * 213.71994 * 4 2 1 7 7 C 1.47079 * 125.63173 * 355.16980 * 6 4 2 8 8 C 1.54465 * 107.29699 * 179.00195 * 7 6 4 9 9 C 1.54370 * 102.86410 * 338.49489 * 8 7 6 10 10 C 1.47576 * 125.62538 * 175.14828 * 6 4 2 11 11 C 1.52369 * 110.37436 * 152.42249 * 9 8 7 12 12 N 1.47331 * 108.44016 * 73.37203 * 11 9 8 13 13 C 1.36935 * 121.07859 * 229.16161 * 12 11 9 14 14 H 1.07996 * 120.00464 * 153.34044 * 13 12 11 15 15 C 1.38821 * 120.00005 * 333.33723 * 13 12 11 16 16 N 1.31617 * 119.99798 * 160.25427 * 15 13 12 17 17 Si 1.86796 * 119.99783 * 340.25932 * 15 13 12 18 18 H 1.48501 * 109.47174 * 89.30687 * 17 15 13 19 19 H 1.48501 * 109.46863 * 209.30471 * 17 15 13 20 20 H 1.48491 * 109.47248 * 329.30110 * 17 15 13 21 21 C 1.47235 * 117.79565 * 49.16637 * 12 11 9 22 22 C 1.53277 * 108.58951 * 308.79406 * 21 12 11 23 23 O 1.41885 * 110.72002 * 276.30610 * 9 8 7 24 24 N 1.46498 * 109.46702 * 240.00391 * 2 1 3 25 25 C 1.34423 * 126.82970 * 324.99692 * 24 2 1 26 26 N 1.30831 * 108.08491 * 179.97438 * 25 24 2 27 27 C 1.33250 * 109.82305 * 359.97438 * 26 25 24 28 28 N 1.30706 * 108.94570 * 359.75371 * 27 26 25 29 29 H 1.08990 * 109.47262 * 60.38402 * 1 2 3 30 30 H 1.09006 * 109.46604 * 180.38150 * 1 2 3 31 31 H 1.08997 * 109.46726 * 300.37860 * 1 2 3 32 32 H 1.08996 * 109.88194 * 59.57481 * 7 6 4 33 33 H 1.09005 * 109.88237 * 298.42256 * 7 6 4 34 34 H 1.09005 * 110.72836 * 220.15725 * 8 7 6 35 35 H 1.08997 * 110.88790 * 96.91775 * 8 7 6 36 36 H 1.08996 * 110.38299 * 84.50038 * 10 6 4 37 37 H 1.08997 * 110.37653 * 322.14822 * 10 6 4 38 38 H 1.09001 * 109.67762 * 193.12078 * 11 9 8 39 39 H 1.09003 * 109.67614 * 313.62364 * 11 9 8 40 40 H 0.97003 * 119.99703 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.61140 * 189.06744 * 21 12 11 42 42 H 1.09001 * 109.76910 * 68.61739 * 21 12 11 43 43 H 1.09004 * 109.51129 * 293.07120 * 22 21 12 44 44 H 1.08996 * 109.51348 * 172.92228 * 22 21 12 45 45 H 1.08009 * 125.95484 * 359.97438 * 25 24 2 46 46 H 1.07995 * 125.52473 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.4109 -1.6470 1.6861 6 7 3.1724 -0.3051 1.8243 7 6 4.0729 0.7446 1.3239 8 6 5.2283 0.8812 2.3400 9 6 4.6249 0.2833 3.6290 10 6 3.7228 -0.8411 3.0843 11 6 5.7249 -0.2933 4.5117 12 7 6.4662 0.8240 5.1222 13 6 7.8344 0.8674 5.0874 14 1 8.3458 1.8178 5.1274 15 6 8.5642 -0.3103 5.0007 16 7 9.8118 -0.2820 4.5824 17 14 7.7755 -1.9350 5.4775 18 1 7.1142 -2.5318 4.2893 19 1 8.8196 -2.8631 5.9811 20 1 6.7658 -1.7018 6.5411 21 6 5.6871 1.8918 5.7708 22 6 4.6140 2.3782 4.7904 23 8 3.8592 1.2557 4.3227 24 7 2.0183 -0.6905 -1.1962 25 6 1.4559 -1.7517 -1.8000 26 7 2.1932 -2.0691 -2.8331 27 6 3.2299 -1.2367 -2.9212 28 7 3.1634 -0.3711 -1.9441 29 1 -0.3633 0.5078 -0.8933 30 1 -0.3633 -1.0277 0.0068 31 1 -0.3633 0.5197 0.8866 32 1 3.5342 1.6889 1.2460 33 1 4.4686 0.4598 0.3490 34 1 5.4910 1.9289 2.4868 35 1 6.0980 0.3080 2.0189 36 1 4.3101 -1.7386 2.8906 37 1 2.9189 -1.0571 3.7881 38 1 5.2824 -0.9108 5.2933 39 1 6.4024 -0.8963 3.9071 40 1 10.3217 -1.1049 4.5215 41 1 6.3469 2.7194 6.0314 42 1 5.2112 1.5055 6.6722 43 1 5.0912 2.8738 3.9448 44 1 3.9494 3.0786 5.2961 45 1 0.5528 -2.2546 -1.4868 46 1 3.9984 -1.2695 -3.6793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972349625.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:13 Heat of formation + Delta-G solvation = 42.471945 kcal Electronic energy + Delta-G solvation = -30550.814851 eV Core-core repulsion = 26478.495590 eV Total energy + Delta-G solvation = -4072.319261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.20278 -41.82622 -40.44546 -37.80127 -36.43994 -36.04991 -33.68051 -33.18952 -32.41113 -31.15818 -31.01349 -29.51519 -27.90884 -25.89362 -25.46053 -24.44869 -23.30694 -22.88877 -22.51486 -20.92161 -20.42532 -19.12539 -18.95561 -18.25420 -17.92756 -17.23319 -16.90442 -16.64098 -16.32388 -16.02434 -15.95940 -15.79706 -15.54467 -15.48284 -15.15877 -14.62455 -14.39867 -14.20210 -14.04907 -13.85053 -13.79907 -13.66449 -13.39494 -13.18710 -13.15840 -12.87009 -12.53858 -12.44464 -12.33447 -12.27619 -12.02492 -11.77972 -11.63950 -11.35572 -11.10029 -11.06343 -10.85739 -10.62521 -10.51441 -9.91722 -8.99295 -8.22517 -5.55397 0.46207 0.75389 1.20544 1.35167 1.41153 1.57350 1.79098 1.95050 2.33237 2.53298 2.87354 3.10197 3.19158 3.30118 3.39096 3.42976 3.66189 3.72136 3.77878 3.94701 4.04843 4.11000 4.19277 4.24703 4.35462 4.38173 4.44290 4.50473 4.55911 4.58533 4.61942 4.66534 4.71865 4.83747 4.88023 4.96383 5.02838 5.04125 5.18983 5.21279 5.39685 5.71767 5.75761 6.06599 6.19349 6.22450 6.72796 6.77804 7.02584 7.50683 7.92387 8.96700 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015701 B = 0.003582 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.858429 B = 7815.155652 C = 8494.907941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 H 0.136 0.864 4 C 0.517 3.483 5 O -0.558 6.558 6 N -0.602 5.602 7 C 0.111 3.889 8 C -0.140 4.140 9 C 0.104 3.896 10 C 0.122 3.878 11 C 0.109 3.891 12 N -0.617 5.617 13 C -0.242 4.242 14 H 0.065 0.935 15 C -0.024 4.024 16 N -0.950 5.950 17 Si 0.929 3.071 18 H -0.275 1.275 19 H -0.309 1.309 20 H -0.268 1.268 21 C 0.104 3.896 22 C 0.050 3.950 23 O -0.370 6.370 24 N -0.377 5.377 25 C 0.268 3.732 26 N -0.570 5.570 27 C 0.197 3.803 28 N -0.339 5.339 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.029 0.971 39 H 0.064 0.936 40 H 0.262 0.738 41 H 0.077 0.923 42 H 0.035 0.965 43 H 0.059 0.941 44 H 0.128 0.872 45 H 0.245 0.755 46 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.488 4.390 -11.100 23.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.045 3.955 3 H 0.154 0.846 4 C 0.304 3.696 5 O -0.436 6.436 6 N -0.334 5.334 7 C -0.010 4.010 8 C -0.178 4.178 9 C 0.062 3.938 10 C -0.001 4.001 11 C -0.017 4.017 12 N -0.342 5.342 13 C -0.371 4.371 14 H 0.083 0.917 15 C -0.219 4.219 16 N -0.596 5.596 17 Si 0.758 3.242 18 H -0.202 1.202 19 H -0.238 1.238 20 H -0.192 1.192 21 C -0.020 4.020 22 C -0.027 4.027 23 O -0.288 6.288 24 N -0.169 5.169 25 C -0.028 4.028 26 N -0.297 5.297 27 C -0.106 4.106 28 N -0.166 5.166 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.053 0.947 43 H 0.078 0.922 44 H 0.146 0.854 45 H 0.261 0.739 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -20.494 4.153 -10.917 23.589 hybrid contribution 0.862 -1.143 0.753 1.617 sum -19.633 3.010 -10.164 22.312 Atomic orbital electron populations 1.22110 0.87245 1.05450 1.05835 1.21530 0.98653 0.97620 0.77685 0.84649 1.20815 0.79275 0.83907 0.85651 1.90717 1.57417 1.29067 1.66365 1.48620 1.22356 1.38404 1.24041 1.22201 0.90257 0.91169 0.97420 1.22952 0.97270 1.03708 0.93896 1.22069 0.90650 0.89648 0.91474 1.22004 0.97296 0.95050 0.85783 1.21713 0.93413 0.91272 0.95339 1.44489 1.01909 1.23829 1.64022 1.18838 0.80836 0.93129 1.44315 0.91723 1.25734 0.95542 1.00341 1.00328 1.69914 1.11254 1.28375 1.50015 0.86240 0.77189 0.81603 0.79151 1.20164 1.23767 1.19246 1.21879 0.93848 0.91658 0.94628 1.23240 0.94518 0.87631 0.97279 1.87683 1.34795 1.32495 1.73864 1.50469 1.19516 1.25034 1.21897 1.26658 0.99684 0.87511 0.88951 1.70647 1.07843 1.29704 1.21521 1.26649 0.97438 0.89145 0.97320 1.78054 1.03892 1.25741 1.08909 0.88244 0.90086 0.88246 0.88553 0.90287 0.88469 0.91248 0.90621 0.89486 0.95278 0.91799 0.92877 0.90426 0.94666 0.92233 0.85449 0.73888 0.74090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.50 71.99 0.61 -0.96 16 2 C 0.15 2.58 3.38 44.25 0.15 2.73 16 3 H 0.14 1.93 6.95 -2.39 -0.02 1.92 16 4 C 0.52 12.97 7.19 87.66 0.63 13.60 16 5 O -0.56 -17.12 16.55 -3.05 -0.05 -17.17 16 6 N -0.60 -16.13 3.33 -812.59 -2.71 -18.84 16 7 C 0.11 2.66 6.22 86.77 0.54 3.20 16 8 C -0.14 -4.20 5.87 31.56 0.19 -4.02 16 9 C 0.10 3.42 0.84 -10.16 -0.01 3.41 16 10 C 0.12 3.79 6.07 86.55 0.53 4.32 16 11 C 0.11 4.47 3.04 86.01 0.26 4.73 16 12 N -0.62 -27.32 2.76 -698.66 -1.93 -29.25 16 13 C -0.24 -12.94 10.11 84.04 0.85 -12.09 16 14 H 0.07 3.73 8.06 -2.91 -0.02 3.70 16 15 C -0.02 -1.35 5.26 84.86 0.45 -0.90 16 16 N -0.95 -57.74 13.97 21.65 0.30 -57.44 16 17 Si 0.93 45.67 24.26 68.60 1.66 47.33 16 18 H -0.27 -12.80 6.49 99.48 0.65 -12.16 16 19 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 20 H -0.27 -12.86 6.68 99.48 0.66 -12.19 16 21 C 0.10 3.65 6.71 86.33 0.58 4.23 16 22 C 0.05 1.38 6.78 72.07 0.49 1.87 16 23 O -0.37 -11.42 10.28 -148.95 -1.53 -12.95 16 24 N -0.38 -7.50 3.53 -335.01 -1.18 -8.68 16 25 C 0.27 5.03 11.78 180.36 2.12 7.15 16 26 N -0.57 -12.65 11.19 -204.00 -2.28 -14.94 16 27 C 0.20 4.07 13.03 180.76 2.36 6.42 16 28 N -0.34 -7.68 12.70 -61.25 -0.78 -8.46 16 29 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.90 6.94 -2.38 -0.02 0.88 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 1.81 7.64 -2.39 -0.02 1.79 16 33 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 34 H 0.10 2.83 6.07 -2.38 -0.01 2.81 16 35 H 0.07 2.39 7.82 -2.39 -0.02 2.37 16 36 H 0.08 2.46 7.99 -2.39 -0.02 2.44 16 37 H 0.09 2.74 8.10 -2.39 -0.02 2.72 16 38 H 0.03 1.24 6.85 -2.39 -0.02 1.22 16 39 H 0.06 2.90 4.47 -2.39 -0.01 2.89 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.08 2.63 7.96 -2.39 -0.02 2.61 16 42 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.59 6.22 -2.38 -0.01 1.58 16 44 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.25 2.81 7.33 -2.91 -0.02 2.79 16 46 H 0.24 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -73.34 363.10 2.14 -71.20 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.90 Total: 15.52 kcal Atomic # 6 Polarization: 23.94 SS G_CDS: 9.74 Total: 33.68 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -8.58 Total: -137.61 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -1.58 Total: -30.12 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.66 Total: 47.33 kcal Total: -73.34 2.14 -71.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972349625.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.674 kcal (2) G-P(sol) polarization free energy of solvation -73.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds