Wall clock time and date at job start Tue Mar 31 2020 18:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47496 * 2 1 4 4 C 1.50699 * 109.47069 * 239.99930 * 2 1 3 5 5 O 1.21282 * 120.00052 * 324.56088 * 4 2 1 6 6 N 1.34779 * 120.00302 * 144.56223 * 4 2 1 7 7 C 1.47081 * 125.62744 * 355.31991 * 6 4 2 8 8 C 1.54466 * 107.29715 * 179.02214 * 7 6 4 9 9 C 1.54374 * 103.02886 * 338.40999 * 8 7 6 10 10 C 1.47575 * 125.63050 * 175.32020 * 6 4 2 11 11 C 1.52365 * 110.37400 * 152.51062 * 9 8 7 12 12 N 1.47336 * 108.39851 * 73.34328 * 11 9 8 13 13 C 1.36935 * 121.07821 * 229.16885 * 12 11 9 14 14 H 1.07997 * 120.00331 * 151.64919 * 13 12 11 15 15 C 1.38817 * 119.99918 * 331.65826 * 13 12 11 16 16 N 1.31624 * 119.99801 * 344.73676 * 15 13 12 17 17 Si 1.86800 * 120.00227 * 164.74623 * 15 13 12 18 18 H 1.48505 * 109.47287 * 89.99256 * 17 15 13 19 19 H 1.48498 * 109.47286 * 209.99794 * 17 15 13 20 20 H 1.48499 * 109.46673 * 329.99510 * 17 15 13 21 21 C 1.47172 * 117.84388 * 49.19126 * 12 11 9 22 22 C 1.53273 * 108.57287 * 308.78977 * 21 12 11 23 23 O 1.41890 * 110.71369 * 276.38382 * 9 8 7 24 24 N 1.46500 * 109.47236 * 119.99951 * 2 1 3 25 25 C 1.34428 * 126.82291 * 34.70840 * 24 2 1 26 26 N 1.30838 * 108.07840 * 179.89277 * 25 24 2 27 27 C 1.33236 * 109.82515 * 0.37850 * 26 25 24 28 28 N 1.30709 * 108.95298 * 359.76413 * 27 26 25 29 29 H 1.09001 * 109.47227 * 55.99420 * 1 2 3 30 30 H 1.09003 * 109.47242 * 175.99799 * 1 2 3 31 31 H 1.09001 * 109.46812 * 295.99343 * 1 2 3 32 32 H 1.09000 * 109.87858 * 59.59869 * 7 6 4 33 33 H 1.09005 * 109.88013 * 298.44667 * 7 6 4 34 34 H 1.08991 * 110.73346 * 96.84252 * 8 7 6 35 35 H 1.08997 * 110.73284 * 219.97528 * 8 7 6 36 36 H 1.09003 * 110.37649 * 322.12567 * 10 6 4 37 37 H 1.08995 * 110.37870 * 84.36239 * 10 6 4 38 38 H 1.09002 * 109.67533 * 193.06838 * 11 9 8 39 39 H 1.09001 * 109.67658 * 313.57826 * 11 9 8 40 40 H 0.97000 * 120.00001 * 180.02562 * 16 15 13 41 41 H 1.08994 * 109.61968 * 68.51672 * 21 12 11 42 42 H 1.08999 * 109.61974 * 188.88195 * 21 12 11 43 43 H 1.09007 * 109.50809 * 172.89962 * 22 21 12 44 44 H 1.08996 * 109.51341 * 293.04470 * 22 21 12 45 45 H 1.08002 * 125.96057 * 0.04452 * 25 24 2 46 46 H 1.08001 * 125.52572 * 179.72338 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.4276 -1.6663 -1.6681 6 7 3.1535 -0.2836 -1.8446 7 6 3.9267 0.9137 -1.4812 8 6 5.1357 0.9881 -2.4397 9 6 5.2787 -0.4676 -2.9332 10 6 3.8081 -0.9403 -2.9927 11 6 5.9122 -0.4983 -4.3185 12 7 7.3437 -0.1771 -4.1825 13 6 7.9350 0.7672 -4.9786 14 1 8.7890 1.3206 -4.6168 15 6 7.4368 1.0133 -6.2506 16 7 6.6075 0.1574 -6.8095 17 14 7.9433 2.5589 -7.1693 18 1 9.1625 2.2814 -7.9705 19 1 6.8427 2.9809 -8.0726 20 1 8.2273 3.6430 -6.1951 21 6 8.1175 -0.9044 -3.1635 22 6 7.3752 -0.8083 -1.8260 23 8 6.0228 -1.2413 -2.0053 24 7 2.0183 -0.6906 1.1962 25 6 1.4529 -1.7485 1.8030 26 7 2.1930 -2.0690 2.8332 27 6 3.2302 -1.2373 2.9207 28 7 3.1670 -0.3752 1.9403 29 1 -0.3634 0.5748 -0.8519 30 1 -0.3634 -1.0252 -0.0717 31 1 -0.3633 0.4504 0.9237 32 1 4.2746 0.8318 -0.4514 33 1 3.3076 1.8036 -1.5957 34 1 4.9269 1.6592 -3.2727 35 1 6.0320 1.3046 -1.9063 36 1 3.7540 -2.0242 -2.8914 37 1 3.3437 -0.6235 -3.9265 38 1 5.7985 -1.4919 -4.7521 39 1 5.4292 0.2394 -4.9594 40 1 6.2596 0.3292 -7.6986 41 1 8.2136 -1.9504 -3.4545 42 1 9.1076 -0.4585 -3.0686 43 1 7.8668 -1.4449 -1.0903 44 1 7.3836 0.2246 -1.4783 45 1 0.5471 -2.2483 1.4928 46 1 3.9983 -1.2697 3.6793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972349627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:18 Heat of formation + Delta-G solvation = 57.912195 kcal Electronic energy + Delta-G solvation = -30549.110101 eV Core-core repulsion = 26477.460379 eV Total energy + Delta-G solvation = -4071.649722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.30693 -40.39659 -38.99908 -36.32006 -35.13218 -34.50710 -31.66132 -31.52046 -31.32012 -30.19963 -29.63326 -27.63755 -26.33182 -24.81954 -23.66688 -22.93717 -22.21884 -21.85210 -21.23714 -19.55898 -18.88771 -17.78676 -17.30649 -17.08433 -16.12725 -15.98011 -15.49418 -15.21972 -14.96233 -14.87936 -14.44031 -14.34058 -14.27656 -13.71421 -13.45955 -13.28871 -13.10868 -12.90222 -12.78365 -12.70875 -12.41870 -12.28934 -12.27009 -11.76899 -11.39353 -11.13216 -11.00473 -10.91327 -10.76607 -10.71140 -10.36381 -10.35493 -10.18978 -10.04811 -9.93210 -9.63026 -9.56421 -9.10781 -8.65184 -8.59839 -6.79133 -5.92093 -3.37156 1.36544 1.69179 2.71474 2.81038 2.89320 3.28345 3.36131 3.37065 4.03599 4.06626 4.17246 4.21253 4.36204 4.50124 4.67367 4.78486 4.93704 5.00273 5.12107 5.16950 5.23756 5.29024 5.36942 5.51068 5.57894 5.60926 5.77124 5.79953 5.87670 5.93797 6.01532 6.07099 6.15665 6.23946 6.25826 6.32315 6.43798 6.54669 6.56503 6.74036 6.96638 7.33449 7.41693 7.65207 7.86044 7.87971 7.93394 8.25865 9.03205 9.65650 10.24683 11.16458 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.003281 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.125923 B = 8532.330704 C = 9161.782557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.120 0.880 4 C 0.518 3.482 5 O -0.531 6.531 6 N -0.597 5.597 7 C 0.097 3.903 8 C -0.143 4.143 9 C 0.086 3.914 10 C 0.123 3.877 11 C 0.166 3.834 12 N -0.591 5.591 13 C -0.255 4.255 14 H 0.068 0.932 15 C 0.006 3.994 16 N -0.902 5.902 17 Si 0.903 3.097 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.109 3.891 22 C 0.048 3.952 23 O -0.373 6.373 24 N -0.370 5.370 25 C 0.268 3.732 26 N -0.546 5.546 27 C 0.200 3.800 28 N -0.312 5.312 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.031 0.969 39 H 0.094 0.906 40 H 0.256 0.744 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.217 0.783 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 2.036 14.846 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.038 3.962 3 H 0.138 0.862 4 C 0.303 3.697 5 O -0.407 6.407 6 N -0.329 5.329 7 C -0.026 4.026 8 C -0.181 4.181 9 C 0.044 3.956 10 C 0.001 3.999 11 C 0.040 3.960 12 N -0.315 5.315 13 C -0.384 4.384 14 H 0.085 0.915 15 C -0.193 4.193 16 N -0.546 5.546 17 Si 0.733 3.267 18 H -0.213 1.213 19 H -0.215 1.215 20 H -0.204 1.204 21 C -0.018 4.018 22 C -0.030 4.030 23 O -0.292 6.292 24 N -0.162 5.162 25 C -0.029 4.029 26 N -0.273 5.273 27 C -0.103 4.103 28 N -0.139 5.139 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.049 0.951 39 H 0.112 0.888 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.234 0.766 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -10.469 1.714 14.588 18.037 hybrid contribution 0.404 0.970 -0.877 1.368 sum -10.066 2.683 13.711 17.220 Atomic orbital electron populations 1.22072 0.89830 1.05172 1.04222 1.21381 0.96836 0.97813 0.80218 0.86214 1.20077 0.80334 0.84709 0.84608 1.90727 1.56248 1.27730 1.66001 1.48561 1.24379 1.27314 1.32687 1.22264 0.93454 0.86499 1.00340 1.23023 0.96927 0.98788 0.99329 1.22788 0.90050 0.89208 0.93513 1.22267 0.90332 0.98943 0.88346 1.21073 0.84810 1.00752 0.89404 1.44029 1.03691 1.43961 1.39834 1.19134 1.13934 1.11491 0.93891 0.91455 1.25099 0.99990 0.98394 0.95855 1.70004 1.35264 1.34216 1.15120 0.86293 0.77826 0.83014 0.79614 1.21268 1.21468 1.20397 1.21604 0.95018 0.96018 0.89113 1.23092 0.82650 0.98929 0.98346 1.87661 1.23565 1.55622 1.62402 1.50339 1.19231 1.24940 1.21680 1.26045 0.99281 0.87945 0.89642 1.70604 1.07131 1.28775 1.20807 1.26029 0.97224 0.89945 0.97102 1.78108 1.02748 1.25008 1.08008 0.89143 0.89887 0.90435 0.90744 0.91536 0.89319 0.89373 0.89820 0.89276 0.95112 0.88771 0.93407 0.95570 0.91839 0.89984 0.93454 0.76626 0.76605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.50 37.16 0.32 -0.81 16 2 C 0.14 1.52 3.48 -69.08 -0.24 1.28 16 3 H 0.12 1.11 6.97 -51.93 -0.36 0.75 16 4 C 0.52 7.42 7.17 -10.98 -0.08 7.34 16 5 O -0.53 -9.01 16.50 5.56 0.09 -8.92 16 6 N -0.60 -9.00 3.33 -170.46 -0.57 -9.57 16 7 C 0.10 1.30 5.96 -2.96 -0.02 1.29 16 8 C -0.14 -2.29 5.85 -25.24 -0.15 -2.44 16 9 C 0.09 1.60 0.85 -89.39 -0.08 1.52 16 10 C 0.12 2.11 6.09 -2.62 -0.02 2.10 16 11 C 0.17 3.73 4.06 -3.91 -0.02 3.72 16 12 N -0.59 -14.03 2.97 -172.24 -0.51 -14.54 16 13 C -0.26 -6.59 9.64 -15.06 -0.15 -6.74 16 14 H 0.07 1.71 7.87 -52.49 -0.41 1.29 16 15 C 0.01 0.15 4.97 -17.43 -0.09 0.06 16 16 N -0.90 -24.90 11.23 55.49 0.62 -24.27 16 17 Si 0.90 20.59 29.58 -169.99 -5.03 15.56 16 18 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 21 C 0.11 2.21 6.71 -3.53 -0.02 2.19 16 22 C 0.05 0.84 6.78 37.30 0.25 1.09 16 23 O -0.37 -7.23 10.29 -35.22 -0.36 -7.59 16 24 N -0.37 -4.40 3.53 -57.25 -0.20 -4.60 16 25 C 0.27 2.99 11.79 -90.65 -1.07 1.93 16 26 N -0.55 -6.89 11.19 -15.83 -0.18 -7.06 16 27 C 0.20 2.36 13.03 -91.82 -1.20 1.17 16 28 N -0.31 -4.09 12.70 29.29 0.37 -3.72 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.63 7.00 -51.93 -0.36 0.27 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.72 7.99 -51.93 -0.41 0.31 16 34 H 0.09 1.47 7.83 -51.93 -0.41 1.06 16 35 H 0.09 1.44 6.07 -51.93 -0.32 1.13 16 36 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 37 H 0.09 1.48 8.01 -51.93 -0.42 1.06 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 2.29 6.11 -51.93 -0.32 1.97 16 40 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 1.22 7.96 -51.93 -0.41 0.81 16 43 H 0.08 1.25 8.14 -51.92 -0.42 0.82 16 44 H 0.05 0.80 6.22 -51.93 -0.32 0.48 16 45 H 0.22 1.68 7.43 -52.49 -0.39 1.29 16 46 H 0.22 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -32.82 370.32 -9.38 -42.19 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.65 Total: 3.25 kcal Atomic # 6 Polarization: 16.23 SS G_CDS: -2.54 Total: 13.69 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -0.46 Total: -63.77 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.27 Total: -16.51 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.82 -9.38 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972349627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.107 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds