Wall clock time and date at job start Tue Mar 31 2020 18:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47496 * 2 1 4 4 C 1.50699 * 109.47069 * 239.99930 * 2 1 3 5 5 O 1.21282 * 120.00052 * 324.56088 * 4 2 1 6 6 N 1.34779 * 120.00302 * 144.56223 * 4 2 1 7 7 C 1.47081 * 125.62744 * 355.31991 * 6 4 2 8 8 C 1.54466 * 107.29715 * 179.02214 * 7 6 4 9 9 C 1.54374 * 103.02886 * 338.40999 * 8 7 6 10 10 C 1.47575 * 125.63050 * 175.32020 * 6 4 2 11 11 C 1.52365 * 110.37400 * 152.51062 * 9 8 7 12 12 N 1.47336 * 108.39851 * 73.34328 * 11 9 8 13 13 C 1.36935 * 121.07821 * 229.16885 * 12 11 9 14 14 H 1.07997 * 120.00331 * 151.64919 * 13 12 11 15 15 C 1.38817 * 119.99918 * 331.65826 * 13 12 11 16 16 N 1.31624 * 119.99801 * 344.73676 * 15 13 12 17 17 Si 1.86800 * 120.00227 * 164.74623 * 15 13 12 18 18 H 1.48505 * 109.47287 * 89.99256 * 17 15 13 19 19 H 1.48498 * 109.47286 * 209.99794 * 17 15 13 20 20 H 1.48499 * 109.46673 * 329.99510 * 17 15 13 21 21 C 1.47172 * 117.84388 * 49.19126 * 12 11 9 22 22 C 1.53273 * 108.57287 * 308.78977 * 21 12 11 23 23 O 1.41890 * 110.71369 * 276.38382 * 9 8 7 24 24 N 1.46500 * 109.47236 * 119.99951 * 2 1 3 25 25 C 1.34428 * 126.82291 * 34.70840 * 24 2 1 26 26 N 1.30838 * 108.07840 * 179.89277 * 25 24 2 27 27 C 1.33236 * 109.82515 * 0.37850 * 26 25 24 28 28 N 1.30709 * 108.95298 * 359.76413 * 27 26 25 29 29 H 1.09001 * 109.47227 * 55.99420 * 1 2 3 30 30 H 1.09003 * 109.47242 * 175.99799 * 1 2 3 31 31 H 1.09001 * 109.46812 * 295.99343 * 1 2 3 32 32 H 1.09000 * 109.87858 * 59.59869 * 7 6 4 33 33 H 1.09005 * 109.88013 * 298.44667 * 7 6 4 34 34 H 1.08991 * 110.73346 * 96.84252 * 8 7 6 35 35 H 1.08997 * 110.73284 * 219.97528 * 8 7 6 36 36 H 1.09003 * 110.37649 * 322.12567 * 10 6 4 37 37 H 1.08995 * 110.37870 * 84.36239 * 10 6 4 38 38 H 1.09002 * 109.67533 * 193.06838 * 11 9 8 39 39 H 1.09001 * 109.67658 * 313.57826 * 11 9 8 40 40 H 0.97000 * 120.00001 * 180.02562 * 16 15 13 41 41 H 1.08994 * 109.61968 * 68.51672 * 21 12 11 42 42 H 1.08999 * 109.61974 * 188.88195 * 21 12 11 43 43 H 1.09007 * 109.50809 * 172.89962 * 22 21 12 44 44 H 1.08996 * 109.51341 * 293.04470 * 22 21 12 45 45 H 1.08002 * 125.96057 * 0.04452 * 25 24 2 46 46 H 1.08001 * 125.52572 * 179.72338 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.4276 -1.6663 -1.6681 6 7 3.1535 -0.2836 -1.8446 7 6 3.9267 0.9137 -1.4812 8 6 5.1357 0.9881 -2.4397 9 6 5.2787 -0.4676 -2.9332 10 6 3.8081 -0.9403 -2.9927 11 6 5.9122 -0.4983 -4.3185 12 7 7.3437 -0.1771 -4.1825 13 6 7.9350 0.7672 -4.9786 14 1 8.7890 1.3206 -4.6168 15 6 7.4368 1.0133 -6.2506 16 7 6.6075 0.1574 -6.8095 17 14 7.9433 2.5589 -7.1693 18 1 9.1625 2.2814 -7.9705 19 1 6.8427 2.9809 -8.0726 20 1 8.2273 3.6430 -6.1951 21 6 8.1175 -0.9044 -3.1635 22 6 7.3752 -0.8083 -1.8260 23 8 6.0228 -1.2413 -2.0053 24 7 2.0183 -0.6906 1.1962 25 6 1.4529 -1.7485 1.8030 26 7 2.1930 -2.0690 2.8332 27 6 3.2302 -1.2373 2.9207 28 7 3.1670 -0.3752 1.9403 29 1 -0.3634 0.5748 -0.8519 30 1 -0.3634 -1.0252 -0.0717 31 1 -0.3633 0.4504 0.9237 32 1 4.2746 0.8318 -0.4514 33 1 3.3076 1.8036 -1.5957 34 1 4.9269 1.6592 -3.2727 35 1 6.0320 1.3046 -1.9063 36 1 3.7540 -2.0242 -2.8914 37 1 3.3437 -0.6235 -3.9265 38 1 5.7985 -1.4919 -4.7521 39 1 5.4292 0.2394 -4.9594 40 1 6.2596 0.3292 -7.6986 41 1 8.2136 -1.9504 -3.4545 42 1 9.1076 -0.4585 -3.0686 43 1 7.8668 -1.4449 -1.0903 44 1 7.3836 0.2246 -1.4783 45 1 0.5471 -2.2483 1.4928 46 1 3.9983 -1.2697 3.6793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972349627.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:17 Heat of formation + Delta-G solvation = 37.532520 kcal Electronic energy + Delta-G solvation = -30549.993830 eV Core-core repulsion = 26477.460379 eV Total energy + Delta-G solvation = -4072.533451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.17046 -41.68901 -40.33812 -37.68849 -36.28910 -36.02185 -33.28762 -32.99736 -32.38390 -31.03700 -30.92715 -29.20931 -27.83304 -25.93524 -25.21163 -24.25519 -23.31982 -22.89310 -22.53536 -20.75005 -20.26892 -18.94950 -18.91823 -18.21563 -17.54506 -17.08106 -16.87363 -16.47833 -16.21533 -16.05354 -15.85823 -15.79617 -15.20712 -15.12855 -15.11366 -14.64383 -14.46959 -14.17520 -13.89225 -13.69654 -13.65196 -13.38268 -13.13277 -13.11128 -12.84585 -12.69783 -12.54734 -12.45591 -12.28579 -12.17153 -11.94614 -11.87114 -11.73627 -11.19934 -11.07840 -10.83292 -10.80986 -10.56916 -10.50413 -9.85170 -8.72226 -7.91090 -5.39864 0.46644 0.80018 1.47039 1.49127 1.58228 1.67062 1.80676 1.97677 2.47359 2.65867 3.12395 3.23735 3.32185 3.41270 3.44797 3.50765 3.78604 3.83310 3.93747 3.97255 4.15257 4.22376 4.23478 4.31056 4.40500 4.50384 4.57860 4.60162 4.62142 4.67215 4.71403 4.85789 4.90051 5.00412 5.04577 5.06473 5.11878 5.20514 5.23062 5.42835 5.46350 5.61386 5.74105 6.26519 6.28928 6.36083 6.77376 7.04966 7.05559 7.72738 8.29501 9.15516 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.003281 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.125923 B = 8532.330704 C = 9161.782557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.151 3.849 3 H 0.137 0.863 4 C 0.514 3.486 5 O -0.562 6.562 6 N -0.601 5.601 7 C 0.107 3.893 8 C -0.135 4.135 9 C 0.092 3.908 10 C 0.128 3.872 11 C 0.179 3.821 12 N -0.607 5.607 13 C -0.262 4.262 14 H 0.073 0.927 15 C -0.044 4.044 16 N -0.936 5.936 17 Si 0.968 3.032 18 H -0.289 1.289 19 H -0.293 1.293 20 H -0.265 1.265 21 C 0.104 3.896 22 C 0.055 3.945 23 O -0.386 6.386 24 N -0.376 5.376 25 C 0.267 3.733 26 N -0.570 5.570 27 C 0.196 3.804 28 N -0.338 5.338 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.088 0.912 38 H -0.008 1.008 39 H 0.071 0.929 40 H 0.251 0.749 41 H 0.011 0.989 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.060 0.940 45 H 0.244 0.756 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.970 3.779 16.953 20.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.045 3.955 3 H 0.155 0.845 4 C 0.301 3.699 5 O -0.440 6.440 6 N -0.333 5.333 7 C -0.015 4.015 8 C -0.173 4.173 9 C 0.050 3.950 10 C 0.005 3.995 11 C 0.052 3.948 12 N -0.331 5.331 13 C -0.392 4.392 14 H 0.091 0.909 15 C -0.240 4.240 16 N -0.581 5.581 17 Si 0.795 3.205 18 H -0.215 1.215 19 H -0.219 1.219 20 H -0.190 1.190 21 C -0.021 4.021 22 C -0.022 4.022 23 O -0.305 6.305 24 N -0.168 5.168 25 C -0.029 4.029 26 N -0.297 5.297 27 C -0.106 4.106 28 N -0.164 5.164 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.100 0.900 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.010 0.990 39 H 0.090 0.910 40 H 0.060 0.940 41 H 0.029 0.971 42 H 0.093 0.907 43 H 0.130 0.870 44 H 0.078 0.922 45 H 0.260 0.740 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -11.032 3.472 16.738 20.345 hybrid contribution 0.646 0.316 -1.536 1.697 sum -10.385 3.788 15.201 18.796 Atomic orbital electron populations 1.22129 0.87258 1.05480 1.05912 1.21508 0.98620 0.97578 0.77787 0.84549 1.20854 0.79460 0.84343 0.85262 1.90710 1.57072 1.29193 1.67004 1.48631 1.24822 1.27690 1.32144 1.22275 0.92686 0.87084 0.99417 1.22911 0.98386 0.96383 0.99660 1.22509 0.90135 0.91243 0.91084 1.22015 0.90001 0.97921 0.89574 1.20790 0.84828 0.97655 0.91500 1.44283 1.04456 1.44139 1.40264 1.19473 1.13828 1.11680 0.94176 0.90936 1.25832 1.00398 1.01020 0.96773 1.70169 1.36770 1.35973 1.15226 0.85283 0.76904 0.79967 0.78317 1.21550 1.21916 1.18976 1.21770 0.95830 0.94779 0.89759 1.23132 0.81549 1.00477 0.97055 1.87657 1.24419 1.56349 1.62055 1.50433 1.19153 1.25334 1.21852 1.26632 0.99717 0.87503 0.89058 1.70630 1.07848 1.29473 1.21755 1.26638 0.97459 0.89238 0.97273 1.78050 1.03619 1.25994 1.08754 0.87967 0.90253 0.88212 0.90351 0.88006 0.89979 0.89272 0.91856 0.89421 0.99031 0.91050 0.93959 0.97115 0.90672 0.87014 0.92175 0.74028 0.74020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.50 71.98 0.61 -1.12 16 2 C 0.15 2.78 3.48 44.24 0.15 2.93 16 3 H 0.14 2.05 6.97 -2.39 -0.02 2.03 16 4 C 0.51 13.98 7.17 87.66 0.63 14.61 16 5 O -0.56 -18.74 16.50 -3.04 -0.05 -18.79 16 6 N -0.60 -17.39 3.33 -811.62 -2.71 -20.09 16 7 C 0.11 2.62 5.96 86.77 0.52 3.14 16 8 C -0.14 -4.19 5.85 31.56 0.18 -4.00 16 9 C 0.09 3.44 0.85 -10.00 -0.01 3.43 16 10 C 0.13 4.49 6.09 86.71 0.53 5.01 16 11 C 0.18 8.37 4.06 86.01 0.35 8.72 16 12 N -0.61 -29.28 2.97 -698.85 -2.07 -31.35 16 13 C -0.26 -13.59 9.64 84.03 0.81 -12.78 16 14 H 0.07 3.63 7.87 -2.91 -0.02 3.60 16 15 C -0.04 -2.36 4.97 84.86 0.42 -1.94 16 16 N -0.94 -53.34 11.23 21.65 0.24 -53.09 16 17 Si 0.97 42.56 29.58 68.60 2.03 44.59 16 18 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 C 0.10 4.22 6.71 86.34 0.58 4.79 16 22 C 0.06 1.85 6.78 72.07 0.49 2.33 16 23 O -0.39 -14.72 10.29 -148.95 -1.53 -16.25 16 24 N -0.38 -8.07 3.53 -335.03 -1.18 -9.26 16 25 C 0.27 5.43 11.79 180.36 2.13 7.56 16 26 N -0.57 -13.36 11.19 -204.00 -2.28 -15.64 16 27 C 0.20 4.27 13.03 180.77 2.36 6.62 16 28 N -0.34 -8.12 12.70 -61.25 -0.78 -8.90 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.08 1.01 7.00 -2.39 -0.02 0.99 16 31 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.10 1.83 7.99 -2.38 -0.02 1.81 16 34 H 0.08 2.65 7.83 -2.39 -0.02 2.63 16 35 H 0.09 2.74 6.07 -2.39 -0.01 2.73 16 36 H 0.06 2.45 8.10 -2.39 -0.02 2.43 16 37 H 0.09 3.04 8.01 -2.39 -0.02 3.02 16 38 H -0.01 -0.45 8.14 -2.39 -0.02 -0.46 16 39 H 0.07 3.64 6.11 -2.39 -0.01 3.63 16 40 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 2.82 7.96 -2.39 -0.02 2.80 16 43 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 44 H 0.06 1.89 6.22 -2.39 -0.01 1.88 16 45 H 0.24 3.21 7.43 -2.91 -0.02 3.19 16 46 H 0.24 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -72.51 370.32 2.41 -70.10 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.99 Total: 19.38 kcal Atomic # 6 Polarization: 29.56 SS G_CDS: 9.75 Total: 39.30 kcal Atomic # 7 Polarization: -129.56 SS G_CDS: -8.78 Total: -138.34 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.58 Total: -35.04 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -72.51 2.41 -70.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972349627.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.634 kcal (2) G-P(sol) polarization free energy of solvation -72.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds