Wall clock time and date at job start Tue Mar 31 2020 18:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47259 * 2 1 4 4 C 1.50702 * 109.47304 * 239.99446 * 2 1 3 5 5 O 1.21274 * 120.00218 * 265.30680 * 4 2 1 6 6 N 1.34781 * 119.99718 * 85.30715 * 4 2 1 7 7 C 1.47081 * 125.62856 * 174.81831 * 6 4 2 8 8 C 1.54460 * 107.42573 * 181.04264 * 7 6 4 9 9 C 1.54374 * 102.86196 * 21.43093 * 8 7 6 10 10 C 1.47884 * 125.79595 * 354.75401 * 6 4 2 11 11 C 1.52356 * 110.38249 * 207.57905 * 9 8 7 12 12 N 1.47330 * 108.40707 * 286.59516 * 11 9 8 13 13 C 1.36937 * 121.07126 * 130.79887 * 12 11 9 14 14 H 1.08000 * 120.00248 * 207.95673 * 13 12 11 15 15 C 1.38813 * 120.00021 * 27.95886 * 13 12 11 16 16 N 1.31613 * 120.00044 * 9.59228 * 15 13 12 17 17 Si 1.86795 * 119.99873 * 189.58586 * 15 13 12 18 18 H 1.48508 * 109.47180 * 90.00131 * 17 15 13 19 19 H 1.48497 * 109.47243 * 209.99969 * 17 15 13 20 20 H 1.48498 * 109.47619 * 330.00230 * 17 15 13 21 21 C 1.47161 * 117.85454 * 310.82011 * 12 11 9 22 22 C 1.53278 * 108.55326 * 51.22501 * 21 12 11 23 23 O 1.41886 * 110.71999 * 83.68486 * 9 8 7 24 24 N 1.46505 * 109.47250 * 119.99541 * 2 1 3 25 25 C 1.34429 * 126.82210 * 34.71273 * 24 2 1 26 26 N 1.30832 * 108.07906 * 179.89408 * 25 24 2 27 27 C 1.33245 * 109.82626 * 0.37512 * 26 25 24 28 28 N 1.30718 * 108.94758 * 359.76645 * 27 26 25 29 29 H 1.08999 * 109.46955 * 54.63746 * 1 2 3 30 30 H 1.08997 * 109.47121 * 174.63727 * 1 2 3 31 31 H 1.09003 * 109.46826 * 294.64075 * 1 2 3 32 32 H 1.09005 * 109.87496 * 61.54761 * 7 6 4 33 33 H 1.08994 * 109.87936 * 300.54819 * 7 6 4 34 34 H 1.09001 * 110.73350 * 139.77205 * 8 7 6 35 35 H 1.08998 * 110.73252 * 262.90725 * 8 7 6 36 36 H 1.08996 * 110.30180 * 37.84307 * 10 6 4 37 37 H 1.08994 * 110.44691 * 275.49650 * 10 6 4 38 38 H 1.08996 * 109.67525 * 46.32508 * 11 9 8 39 39 H 1.09001 * 109.67803 * 166.86467 * 11 9 8 40 40 H 0.97004 * 120.00660 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.62203 * 291.50665 * 21 12 11 42 42 H 1.08998 * 109.77964 * 171.03653 * 21 12 11 43 43 H 1.09002 * 109.50880 * 187.07547 * 22 21 12 44 44 H 1.08998 * 109.50977 * 66.93440 * 22 21 12 45 45 H 1.08004 * 125.95816 * 0.03385 * 25 24 2 46 46 H 1.08000 * 125.52423 * 179.79982 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3156 -1.8885 -1.1772 6 7 2.1670 -0.0367 -2.3899 7 6 2.7437 -0.5746 -3.6315 8 6 2.7163 0.5571 -4.6824 9 6 2.6266 1.8303 -3.8141 10 6 1.7594 1.3647 -2.6283 11 6 1.9295 2.9473 -4.5806 12 7 2.8559 3.4555 -5.6073 13 6 2.4547 3.6090 -6.9075 14 1 3.1765 3.5362 -7.7076 15 6 1.1202 3.8582 -7.1973 16 7 0.2763 4.1342 -6.2257 17 14 0.5223 3.8022 -8.9660 18 1 0.0788 2.4236 -9.2952 19 1 -0.6156 4.7415 -9.1339 20 1 1.6281 4.1967 -9.8752 21 6 4.2265 3.7922 -5.1905 22 6 4.8109 2.5991 -4.4261 23 8 3.9149 2.2291 -3.3732 24 7 2.0184 -0.6905 1.1963 25 6 1.4530 -1.7484 1.8031 26 7 2.1930 -2.0689 2.8334 27 6 3.2303 -1.2371 2.9209 28 7 3.1670 -0.3751 1.9403 29 1 -0.3633 0.5948 -0.8381 30 1 -0.3633 -1.0231 -0.0960 31 1 -0.3633 0.4285 0.9341 32 1 2.1494 -1.4190 -3.9807 33 1 3.7713 -0.8923 -3.4556 34 1 3.6321 0.5569 -5.2735 35 1 1.8424 0.4639 -5.3271 36 1 1.9634 1.9730 -1.7471 37 1 0.7022 1.4148 -2.8885 38 1 1.0299 2.5589 -5.0579 39 1 1.6636 3.7523 -3.8954 40 1 -0.6562 4.3087 -6.4281 41 1 4.2072 4.6683 -4.5423 42 1 4.8385 3.9999 -6.0683 43 1 5.7763 2.8759 -4.0022 44 1 4.9394 1.7580 -5.1073 45 1 0.5472 -2.2482 1.4929 46 1 3.9990 -1.2702 3.6788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972349629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:22 Heat of formation + Delta-G solvation = 58.908498 kcal Electronic energy + Delta-G solvation = -30304.526656 eV Core-core repulsion = 26232.920137 eV Total energy + Delta-G solvation = -4071.606519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.23607 -40.43988 -38.99949 -36.29127 -35.15575 -34.57640 -31.75157 -31.45466 -31.35545 -30.40872 -29.48161 -27.54355 -25.97746 -25.37427 -23.71865 -23.04984 -22.03470 -21.61370 -21.45694 -19.59516 -18.85035 -17.60763 -17.49663 -17.04389 -16.32406 -15.80763 -15.54659 -15.23075 -15.07964 -14.61200 -14.48990 -14.37100 -14.27299 -13.91733 -13.50863 -13.41867 -13.11558 -12.82768 -12.80876 -12.65669 -12.56309 -12.49064 -12.16527 -11.75075 -11.42778 -11.13832 -11.02044 -10.97118 -10.79055 -10.57533 -10.39178 -10.34347 -10.13242 -10.11564 -9.85711 -9.69859 -9.59265 -9.14926 -8.70732 -8.64579 -6.84667 -5.96158 -3.43164 1.45930 1.93337 2.43980 2.86486 2.95431 3.25549 3.33502 3.33962 4.02434 4.06489 4.19042 4.23858 4.31707 4.48283 4.67695 4.80958 4.90012 5.04738 5.11243 5.19519 5.24559 5.27686 5.31934 5.42752 5.51676 5.56883 5.69810 5.71855 5.79765 5.87352 6.00801 6.07309 6.16985 6.22577 6.25808 6.32405 6.41521 6.51542 6.62423 6.68313 6.95081 7.31259 7.37866 7.59419 7.79416 7.91353 7.98319 8.21902 8.99808 9.60573 10.18152 11.11710 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.002970 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.797155 B = 9423.775397 C = 9872.007404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.129 0.871 4 C 0.522 3.478 5 O -0.535 6.535 6 N -0.602 5.602 7 C 0.113 3.887 8 C -0.143 4.143 9 C 0.085 3.915 10 C 0.109 3.891 11 C 0.163 3.837 12 N -0.593 5.593 13 C -0.250 4.250 14 H 0.069 0.931 15 C 0.004 3.996 16 N -0.908 5.908 17 Si 0.907 3.093 18 H -0.286 1.286 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.109 3.891 22 C 0.047 3.953 23 O -0.375 6.375 24 N -0.363 5.363 25 C 0.275 3.725 26 N -0.550 5.550 27 C 0.198 3.802 28 N -0.316 5.316 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.030 0.970 40 H 0.256 0.744 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.215 0.785 46 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.332 -6.870 10.937 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.146 0.854 4 C 0.307 3.693 5 O -0.412 6.412 6 N -0.336 5.336 7 C -0.009 4.009 8 C -0.181 4.181 9 C 0.043 3.957 10 C -0.013 4.013 11 C 0.036 3.964 12 N -0.317 5.317 13 C -0.380 4.380 14 H 0.086 0.914 15 C -0.194 4.194 16 N -0.553 5.553 17 Si 0.737 3.263 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.017 4.017 22 C -0.031 4.031 23 O -0.294 6.294 24 N -0.154 5.154 25 C -0.022 4.022 26 N -0.277 5.277 27 C -0.105 4.105 28 N -0.143 5.143 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.122 0.878 39 H 0.048 0.952 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.101 0.899 44 H 0.066 0.934 45 H 0.231 0.769 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.802 -7.141 11.216 13.321 hybrid contribution -0.438 0.079 -1.437 1.505 sum 0.364 -7.062 9.779 12.068 Atomic orbital electron populations 1.22153 0.89713 1.04728 1.05304 1.21216 0.96736 0.97890 0.80705 0.85353 1.20060 0.78899 0.86936 0.83379 1.90737 1.50899 1.15260 1.84295 1.48559 1.60230 1.14115 1.10664 1.22011 0.98363 0.97116 0.83370 1.23058 1.04585 0.93522 0.96979 1.22712 0.85025 0.95451 0.92560 1.22471 0.99000 0.80642 0.99226 1.21219 0.93636 0.91608 0.89925 1.44026 1.07118 1.74358 1.06169 1.19195 0.93171 1.42993 0.82611 0.91366 1.25103 0.97454 0.99323 0.97564 1.69915 1.03878 1.51027 1.30452 0.86217 0.78366 0.77536 0.84207 1.21332 1.21570 1.20417 1.21597 0.88331 0.94461 0.97326 1.23111 0.92006 0.97848 0.90162 1.87634 1.22606 1.86309 1.32857 1.50129 1.18988 1.24758 1.21479 1.25892 0.99106 0.87684 0.89470 1.70575 1.07247 1.28780 1.21125 1.25995 0.97327 0.90076 0.97138 1.78100 1.02899 1.25204 1.08100 0.88509 0.90582 0.89818 0.91497 0.91733 0.89456 0.89238 0.89800 0.88765 0.87809 0.95233 0.93391 0.95464 0.91846 0.89869 0.93431 0.76889 0.76672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.71 37.16 0.32 -0.87 16 2 C 0.14 1.60 3.23 -69.08 -0.22 1.37 16 3 H 0.13 1.40 6.79 -51.93 -0.35 1.04 16 4 C 0.52 7.54 7.05 -10.98 -0.08 7.47 16 5 O -0.54 -9.52 16.73 5.56 0.09 -9.43 16 6 N -0.60 -8.59 3.34 -170.52 -0.57 -9.16 16 7 C 0.11 1.67 6.87 -2.96 -0.02 1.65 16 8 C -0.14 -2.27 5.86 -25.24 -0.15 -2.42 16 9 C 0.08 1.43 0.84 -89.65 -0.08 1.35 16 10 C 0.11 1.50 5.84 -2.70 -0.02 1.48 16 11 C 0.16 3.38 4.03 -3.92 -0.02 3.37 16 12 N -0.59 -13.41 2.98 -172.25 -0.51 -13.92 16 13 C -0.25 -6.24 9.68 -15.06 -0.15 -6.39 16 14 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 15 C 0.00 0.10 5.11 -17.43 -0.09 0.01 16 16 N -0.91 -23.82 10.86 55.49 0.60 -23.22 16 17 Si 0.91 20.16 29.56 -169.99 -5.03 15.13 16 18 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 C 0.11 2.10 6.71 -3.54 -0.02 2.08 16 22 C 0.05 0.77 6.78 37.30 0.25 1.02 16 23 O -0.37 -6.68 10.28 -35.22 -0.36 -7.04 16 24 N -0.36 -4.69 3.25 -57.24 -0.19 -4.87 16 25 C 0.28 3.25 11.51 -90.65 -1.04 2.20 16 26 N -0.55 -7.23 11.19 -15.83 -0.18 -7.41 16 27 C 0.20 2.46 13.03 -91.81 -1.20 1.26 16 28 N -0.32 -4.54 12.70 29.29 0.37 -4.17 16 29 H 0.10 0.63 8.06 -51.93 -0.42 0.21 16 30 H 0.08 0.52 7.50 -51.93 -0.39 0.13 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.42 6.07 -51.93 -0.32 1.10 16 35 H 0.09 1.47 7.83 -51.93 -0.41 1.06 16 36 H 0.08 1.06 6.83 -51.93 -0.35 0.70 16 37 H 0.09 1.16 7.99 -51.93 -0.42 0.74 16 38 H 0.10 2.37 5.88 -51.93 -0.31 2.07 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.06 1.16 7.97 -51.93 -0.41 0.75 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.78 6.22 -51.93 -0.32 0.45 16 45 H 0.21 1.71 7.47 -52.48 -0.39 1.32 16 46 H 0.22 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -32.71 369.18 -9.29 -42.01 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.59 Total: 2.91 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: -2.50 Total: 13.60 kcal Atomic # 7 Polarization: -62.28 SS G_CDS: -0.47 Total: -62.75 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.27 Total: -16.47 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.71 -9.29 -42.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972349629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.914 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds