Wall clock time and date at job start Tue Mar 31 2020 18:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47259 * 2 1 4 4 C 1.50702 * 109.47304 * 239.99446 * 2 1 3 5 5 O 1.21274 * 120.00218 * 265.30680 * 4 2 1 6 6 N 1.34781 * 119.99718 * 85.30715 * 4 2 1 7 7 C 1.47081 * 125.62856 * 174.81831 * 6 4 2 8 8 C 1.54460 * 107.42573 * 181.04264 * 7 6 4 9 9 C 1.54374 * 102.86196 * 21.43093 * 8 7 6 10 10 C 1.47884 * 125.79595 * 354.75401 * 6 4 2 11 11 C 1.52356 * 110.38249 * 207.57905 * 9 8 7 12 12 N 1.47330 * 108.40707 * 286.59516 * 11 9 8 13 13 C 1.36937 * 121.07126 * 130.79887 * 12 11 9 14 14 H 1.08000 * 120.00248 * 207.95673 * 13 12 11 15 15 C 1.38813 * 120.00021 * 27.95886 * 13 12 11 16 16 N 1.31613 * 120.00044 * 9.59228 * 15 13 12 17 17 Si 1.86795 * 119.99873 * 189.58586 * 15 13 12 18 18 H 1.48508 * 109.47180 * 90.00131 * 17 15 13 19 19 H 1.48497 * 109.47243 * 209.99969 * 17 15 13 20 20 H 1.48498 * 109.47619 * 330.00230 * 17 15 13 21 21 C 1.47161 * 117.85454 * 310.82011 * 12 11 9 22 22 C 1.53278 * 108.55326 * 51.22501 * 21 12 11 23 23 O 1.41886 * 110.71999 * 83.68486 * 9 8 7 24 24 N 1.46505 * 109.47250 * 119.99541 * 2 1 3 25 25 C 1.34429 * 126.82210 * 34.71273 * 24 2 1 26 26 N 1.30832 * 108.07906 * 179.89408 * 25 24 2 27 27 C 1.33245 * 109.82626 * 0.37512 * 26 25 24 28 28 N 1.30718 * 108.94758 * 359.76645 * 27 26 25 29 29 H 1.08999 * 109.46955 * 54.63746 * 1 2 3 30 30 H 1.08997 * 109.47121 * 174.63727 * 1 2 3 31 31 H 1.09003 * 109.46826 * 294.64075 * 1 2 3 32 32 H 1.09005 * 109.87496 * 61.54761 * 7 6 4 33 33 H 1.08994 * 109.87936 * 300.54819 * 7 6 4 34 34 H 1.09001 * 110.73350 * 139.77205 * 8 7 6 35 35 H 1.08998 * 110.73252 * 262.90725 * 8 7 6 36 36 H 1.08996 * 110.30180 * 37.84307 * 10 6 4 37 37 H 1.08994 * 110.44691 * 275.49650 * 10 6 4 38 38 H 1.08996 * 109.67525 * 46.32508 * 11 9 8 39 39 H 1.09001 * 109.67803 * 166.86467 * 11 9 8 40 40 H 0.97004 * 120.00660 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.62203 * 291.50665 * 21 12 11 42 42 H 1.08998 * 109.77964 * 171.03653 * 21 12 11 43 43 H 1.09002 * 109.50880 * 187.07547 * 22 21 12 44 44 H 1.08998 * 109.50977 * 66.93440 * 22 21 12 45 45 H 1.08004 * 125.95816 * 0.03385 * 25 24 2 46 46 H 1.08000 * 125.52423 * 179.79982 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.3156 -1.8885 -1.1772 6 7 2.1670 -0.0367 -2.3899 7 6 2.7437 -0.5746 -3.6315 8 6 2.7163 0.5571 -4.6824 9 6 2.6266 1.8303 -3.8141 10 6 1.7594 1.3647 -2.6283 11 6 1.9295 2.9473 -4.5806 12 7 2.8559 3.4555 -5.6073 13 6 2.4547 3.6090 -6.9075 14 1 3.1765 3.5362 -7.7076 15 6 1.1202 3.8582 -7.1973 16 7 0.2763 4.1342 -6.2257 17 14 0.5223 3.8022 -8.9660 18 1 0.0788 2.4236 -9.2952 19 1 -0.6156 4.7415 -9.1339 20 1 1.6281 4.1967 -9.8752 21 6 4.2265 3.7922 -5.1905 22 6 4.8109 2.5991 -4.4261 23 8 3.9149 2.2291 -3.3732 24 7 2.0184 -0.6905 1.1963 25 6 1.4530 -1.7484 1.8031 26 7 2.1930 -2.0689 2.8334 27 6 3.2303 -1.2371 2.9209 28 7 3.1670 -0.3751 1.9403 29 1 -0.3633 0.5948 -0.8381 30 1 -0.3633 -1.0231 -0.0960 31 1 -0.3633 0.4285 0.9341 32 1 2.1494 -1.4190 -3.9807 33 1 3.7713 -0.8923 -3.4556 34 1 3.6321 0.5569 -5.2735 35 1 1.8424 0.4639 -5.3271 36 1 1.9634 1.9730 -1.7471 37 1 0.7022 1.4148 -2.8885 38 1 1.0299 2.5589 -5.0579 39 1 1.6636 3.7523 -3.8954 40 1 -0.6562 4.3087 -6.4281 41 1 4.2072 4.6683 -4.5423 42 1 4.8385 3.9999 -6.0683 43 1 5.7763 2.8759 -4.0022 44 1 4.9394 1.7580 -5.1073 45 1 0.5472 -2.2482 1.4929 46 1 3.9990 -1.2702 3.6788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972349629.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:21 Heat of formation + Delta-G solvation = 38.922060 kcal Electronic energy + Delta-G solvation = -30305.393333 eV Core-core repulsion = 26232.920137 eV Total energy + Delta-G solvation = -4072.473196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.15420 -41.68081 -40.29323 -37.61426 -36.24883 -36.07899 -33.23463 -32.96327 -32.38514 -31.53914 -30.50647 -29.08820 -27.40274 -26.37945 -25.18722 -24.31288 -23.12002 -22.92400 -22.52578 -20.68494 -20.28445 -18.96594 -18.70140 -18.27493 -17.60868 -17.13767 -16.75666 -16.44358 -16.11873 -16.11128 -15.77638 -15.66765 -15.27612 -15.15568 -15.10247 -14.62016 -14.50454 -14.22915 -13.84549 -13.72564 -13.55243 -13.37311 -13.26691 -13.04173 -12.80374 -12.70661 -12.51365 -12.45974 -12.27242 -12.10482 -11.88555 -11.86628 -11.60622 -11.17802 -11.07806 -10.82205 -10.76627 -10.58738 -10.47529 -9.85718 -8.66100 -7.86528 -5.35736 0.52990 1.02141 1.39157 1.48726 1.51374 1.58115 1.83764 1.99640 2.49208 2.72251 3.04420 3.28530 3.39250 3.42262 3.44751 3.64395 3.71487 3.84159 3.93622 3.96087 4.14487 4.24235 4.28777 4.35889 4.40708 4.53147 4.59765 4.61218 4.65290 4.65938 4.77786 4.89654 4.91895 5.00377 5.05704 5.11518 5.14566 5.21755 5.29308 5.44312 5.59141 5.65182 5.77070 6.23816 6.33139 6.41236 6.79748 7.05937 7.12394 7.77947 8.32445 9.18652 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.002970 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.797155 B = 9423.775397 C = 9872.007404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.145 3.855 3 H 0.132 0.868 4 C 0.521 3.479 5 O -0.571 6.571 6 N -0.601 5.601 7 C 0.119 3.881 8 C -0.134 4.134 9 C 0.087 3.913 10 C 0.116 3.884 11 C 0.174 3.826 12 N -0.611 5.611 13 C -0.258 4.258 14 H 0.068 0.932 15 C -0.042 4.042 16 N -0.932 5.932 17 Si 0.964 3.036 18 H -0.284 1.284 19 H -0.296 1.296 20 H -0.274 1.274 21 C 0.106 3.894 22 C 0.052 3.948 23 O -0.382 6.382 24 N -0.371 5.371 25 C 0.277 3.723 26 N -0.573 5.573 27 C 0.197 3.803 28 N -0.354 5.354 29 H 0.108 0.892 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.111 0.889 38 H 0.082 0.918 39 H 0.006 0.994 40 H 0.252 0.748 41 H 0.019 0.981 42 H 0.069 0.931 43 H 0.113 0.887 44 H 0.052 0.948 45 H 0.246 0.754 46 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.163 -7.493 11.518 13.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.038 3.962 3 H 0.150 0.850 4 C 0.309 3.691 5 O -0.451 6.451 6 N -0.334 5.334 7 C -0.003 4.003 8 C -0.172 4.172 9 C 0.045 3.955 10 C -0.006 4.006 11 C 0.048 3.952 12 N -0.335 5.335 13 C -0.387 4.387 14 H 0.085 0.915 15 C -0.238 4.238 16 N -0.578 5.578 17 Si 0.793 3.207 18 H -0.210 1.210 19 H -0.223 1.223 20 H -0.199 1.199 21 C -0.020 4.020 22 C -0.025 4.025 23 O -0.301 6.301 24 N -0.162 5.162 25 C -0.020 4.020 26 N -0.300 5.300 27 C -0.105 4.105 28 N -0.181 5.181 29 H 0.127 0.873 30 H 0.103 0.897 31 H 0.119 0.881 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.100 0.900 39 H 0.024 0.976 40 H 0.061 0.939 41 H 0.037 0.963 42 H 0.088 0.912 43 H 0.131 0.869 44 H 0.070 0.930 45 H 0.262 0.738 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 0.654 -7.753 11.799 14.133 hybrid contribution -0.320 0.300 -1.629 1.687 sum 0.334 -7.453 10.170 12.613 Atomic orbital electron populations 1.22230 0.86608 1.05772 1.06774 1.21374 0.98954 0.97119 0.78723 0.85014 1.20628 0.77982 0.86574 0.83937 1.90717 1.52556 1.16925 1.84863 1.48560 1.60047 1.14114 1.10656 1.21901 0.98229 0.96827 0.83373 1.22916 1.03959 0.93404 0.96961 1.22542 0.84852 0.94314 0.93791 1.22472 0.99158 0.80420 0.98574 1.20975 0.93167 0.91907 0.89186 1.44282 1.08506 1.74844 1.05903 1.19441 0.93309 1.42182 0.83816 0.91474 1.25719 0.97717 0.99756 1.00568 1.70055 1.03755 1.52187 1.31782 0.85323 0.77517 0.77203 0.80690 1.21029 1.22306 1.19935 1.21731 0.87003 0.95442 0.97795 1.23128 0.92699 0.96661 0.89999 1.87642 1.22815 1.86269 1.33396 1.50245 1.18855 1.25301 1.21770 1.26567 0.99580 0.87060 0.88747 1.70606 1.07916 1.29438 1.22072 1.26643 0.97580 0.89181 0.97135 1.78036 1.04224 1.26656 1.09224 0.87347 0.89730 0.88052 0.90702 0.92456 0.89928 0.90028 0.88304 0.87066 0.90032 0.97639 0.93851 0.96314 0.91230 0.86934 0.92987 0.73799 0.73832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.71 71.98 0.63 -1.24 16 2 C 0.14 2.98 3.23 44.25 0.14 3.13 16 3 H 0.13 2.61 6.79 -2.39 -0.02 2.59 16 4 C 0.52 14.27 7.05 87.66 0.62 14.89 16 5 O -0.57 -19.71 16.73 -3.01 -0.05 -19.76 16 6 N -0.60 -16.22 3.34 -811.79 -2.71 -18.94 16 7 C 0.12 3.38 6.87 86.76 0.60 3.98 16 8 C -0.13 -4.16 5.86 31.56 0.19 -3.97 16 9 C 0.09 2.86 0.84 -10.17 -0.01 2.86 16 10 C 0.12 3.01 5.84 86.49 0.51 3.51 16 11 C 0.17 7.28 4.03 86.01 0.35 7.63 16 12 N -0.61 -27.72 2.98 -698.89 -2.08 -29.80 16 13 C -0.26 -12.88 9.68 84.03 0.81 -12.06 16 14 H 0.07 3.30 7.85 -2.91 -0.02 3.28 16 15 C -0.04 -2.13 5.11 84.86 0.43 -1.69 16 16 N -0.93 -49.51 10.86 21.65 0.24 -49.27 16 17 Si 0.96 41.51 29.56 68.60 2.03 43.54 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 19 H -0.30 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 21 C 0.11 4.02 6.71 86.35 0.58 4.59 16 22 C 0.05 1.66 6.78 72.08 0.49 2.15 16 23 O -0.38 -13.07 10.28 -148.95 -1.53 -14.61 16 24 N -0.37 -8.99 3.25 -335.00 -1.09 -10.08 16 25 C 0.28 6.01 11.51 180.36 2.08 8.09 16 26 N -0.57 -14.23 11.19 -203.99 -2.28 -16.51 16 27 C 0.20 4.67 13.03 180.76 2.36 7.02 16 28 N -0.35 -9.80 12.70 -61.24 -0.78 -10.57 16 29 H 0.11 1.08 8.06 -2.39 -0.02 1.06 16 30 H 0.08 0.90 7.50 -2.39 -0.02 0.88 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.63 6.07 -2.39 -0.01 2.61 16 35 H 0.08 2.66 7.83 -2.39 -0.02 2.64 16 36 H 0.10 2.30 6.83 -2.39 -0.02 2.28 16 37 H 0.11 2.53 7.99 -2.39 -0.02 2.51 16 38 H 0.08 3.79 5.88 -2.39 -0.01 3.78 16 39 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.25 13.06 8.31 -92.71 -0.77 12.29 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 42 H 0.07 2.50 7.97 -2.39 -0.02 2.48 16 43 H 0.11 2.90 8.14 -2.39 -0.02 2.89 16 44 H 0.05 1.61 6.22 -2.39 -0.01 1.60 16 45 H 0.25 3.29 7.47 -2.91 -0.02 3.27 16 46 H 0.25 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -70.58 369.18 2.49 -68.09 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 1.00 Total: 19.05 kcal Atomic # 6 Polarization: 29.11 SS G_CDS: 9.76 Total: 38.87 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -8.71 Total: -135.17 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -1.58 Total: -34.37 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -70.58 2.49 -68.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972349629.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.008 kcal (2) G-P(sol) polarization free energy of solvation -70.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds