Wall clock time and date at job start Tue Mar 31 2020 19:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47228 * 2 1 4 4 N 1.28515 * 124.44593 * 269.97375 * 3 2 1 5 5 C 1.31135 * 109.05917 * 179.73760 * 4 3 2 6 6 C 1.40919 * 105.77362 * 0.43117 * 5 4 3 7 7 C 1.47806 * 127.23449 * 179.83595 * 6 5 4 8 8 O 1.21564 * 120.00010 * 359.71313 * 7 6 5 9 9 N 1.34772 * 119.99910 * 179.71092 * 7 6 5 10 10 C 1.47079 * 125.63150 * 359.96142 * 9 7 6 11 11 C 1.54464 * 107.30106 * 181.03853 * 10 9 7 12 12 C 1.54353 * 102.86926 * 21.47894 * 11 10 9 13 13 C 1.47566 * 125.62570 * 179.97438 * 9 7 6 14 14 C 1.51950 * 110.49229 * 207.76038 * 12 11 10 15 15 N 1.47333 * 108.61743 * 186.50487 * 14 12 11 16 16 C 1.36940 * 121.07420 * 229.15867 * 15 14 12 17 17 H 1.08001 * 120.00121 * 154.16402 * 16 15 14 18 18 C 1.38810 * 119.99942 * 334.16633 * 16 15 14 19 19 N 1.31620 * 120.00034 * 343.40932 * 18 16 15 20 20 Si 1.86799 * 120.00217 * 163.40772 * 18 16 15 21 21 H 1.48499 * 109.47368 * 270.00258 * 20 18 16 22 22 H 1.48505 * 109.46838 * 29.99888 * 20 18 16 23 23 H 1.48494 * 109.47238 * 149.99918 * 20 18 16 24 24 C 1.47160 * 117.85013 * 48.88707 * 15 14 12 25 25 C 1.53282 * 108.56229 * 309.02684 * 24 15 14 26 26 O 1.41892 * 110.75826 * 83.68206 * 12 11 10 27 27 N 1.28586 * 124.44265 * 90.00489 * 3 2 1 28 28 H 1.09000 * 109.47353 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46755 * 300.00087 * 1 2 3 30 30 H 1.08994 * 109.47066 * 59.99646 * 1 2 3 31 31 H 1.08998 * 109.46755 * 239.99913 * 2 1 3 32 32 H 1.09003 * 109.46888 * 120.00106 * 2 1 3 33 33 H 1.07996 * 127.10978 * 180.29281 * 5 4 3 34 34 H 1.08996 * 109.87772 * 300.46823 * 10 9 7 35 35 H 1.09006 * 109.87771 * 61.46255 * 10 9 7 36 36 H 1.09001 * 110.73338 * 263.13246 * 11 10 9 37 37 H 1.09004 * 110.73253 * 139.82458 * 11 10 9 38 38 H 1.09000 * 110.37739 * 37.82665 * 13 9 7 39 39 H 1.09003 * 110.47865 * 275.52433 * 13 9 7 40 40 H 1.09000 * 109.62249 * 66.68092 * 14 12 11 41 41 H 1.08997 * 109.51898 * 306.26941 * 14 12 11 42 42 H 0.97000 * 120.00551 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.62081 * 68.75462 * 24 15 14 44 44 H 1.09003 * 109.61551 * 189.30936 * 24 15 14 45 45 H 1.09004 * 109.50923 * 172.90420 * 25 24 15 46 46 H 1.08995 * 109.51741 * 293.04925 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2612 2.0664 -1.0598 5 6 2.6771 3.2603 -0.7119 6 6 2.6859 3.2674 0.6973 7 6 3.0804 4.3824 1.5836 8 8 3.4530 5.4362 1.1056 9 7 3.0270 4.2309 2.9217 10 6 2.5965 3.0159 3.6299 11 6 2.6743 3.3144 5.1435 12 6 2.6221 4.8563 5.1929 13 6 3.3906 5.2568 3.9182 14 6 3.3403 5.3736 6.4279 15 7 3.1322 6.8293 6.5179 16 6 4.1839 7.6825 6.7209 17 1 4.1218 8.7063 6.3827 18 6 5.3299 7.2314 7.3612 19 7 5.2991 6.1139 8.0558 20 14 6.9160 8.2103 7.2369 21 1 7.6922 7.7479 6.0584 22 1 6.5968 9.6526 7.0844 23 1 7.7199 8.0089 8.4691 24 6 1.7583 7.3374 6.3766 25 6 1.1457 6.7404 5.1046 26 8 1.2807 5.3159 5.1402 27 7 2.2609 2.0668 1.0604 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9574 4.0699 -1.3694 34 1 1.5716 2.7690 3.3531 35 1 3.2580 2.1866 3.3790 36 1 3.6112 2.9464 5.5617 37 1 1.8210 2.8824 5.6664 38 1 3.0753 6.2436 3.5793 39 1 4.4648 5.2452 4.1029 40 1 4.4061 5.1594 6.3482 41 1 2.9335 4.8890 7.3155 42 1 6.0998 5.7988 8.5036 43 1 1.1670 7.0395 7.2424 44 1 1.7764 8.4245 6.2987 45 1 0.0896 7.0047 5.0505 46 1 1.6653 7.1337 4.2310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972368580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:51 Heat of formation + Delta-G solvation = 73.810377 kcal Electronic energy + Delta-G solvation = -30232.729034 eV Core-core repulsion = 26161.768709 eV Total energy + Delta-G solvation = -4070.960325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.78082 -40.13896 -38.50394 -36.10966 -35.12989 -34.45059 -32.92200 -31.66990 -31.23056 -30.60036 -29.05370 -27.69255 -26.21747 -24.98026 -23.86608 -23.25992 -22.73960 -21.62705 -21.02684 -19.63768 -18.76501 -17.63522 -17.28080 -16.81708 -16.78444 -16.07306 -15.44241 -15.21967 -15.05241 -14.87960 -14.48617 -14.34848 -14.13520 -13.64858 -13.47861 -13.22361 -13.08687 -12.84637 -12.67006 -12.59212 -12.20261 -11.95159 -11.88753 -11.79612 -11.40230 -11.08017 -11.03638 -10.97393 -10.81732 -10.74012 -10.53823 -10.46092 -10.24960 -10.01980 -9.91985 -9.58770 -9.53123 -9.06474 -8.54429 -8.34290 -6.76137 -5.85014 -3.27234 1.25643 1.84039 1.93421 3.09066 3.34892 3.36764 3.44001 3.44812 3.76850 4.22521 4.37249 4.38481 4.44751 4.65005 4.69669 4.88080 4.92972 5.03261 5.12104 5.22552 5.31767 5.39887 5.41976 5.51752 5.59495 5.63526 5.77166 5.84307 5.88497 5.91430 6.07007 6.10337 6.24719 6.27647 6.30390 6.37720 6.48265 6.54316 6.65039 6.79167 7.04610 7.40687 7.65435 7.72613 7.92522 7.97271 8.26495 8.31432 9.10511 9.73314 10.30158 11.23595 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.003150 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.886109 B = 8887.173046 C = 9298.956140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.146 5.146 4 N -0.293 5.293 5 C 0.033 3.967 6 C -0.036 4.036 7 C 0.616 3.384 8 O -0.533 6.533 9 N -0.596 5.596 10 C 0.115 3.885 11 C -0.117 4.117 12 C 0.086 3.914 13 C 0.095 3.905 14 C 0.163 3.837 15 N -0.595 5.595 16 C -0.251 4.251 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.905 5.905 20 Si 0.903 3.097 21 H -0.286 1.286 22 H -0.278 1.278 23 H -0.291 1.291 24 C 0.111 3.889 25 C 0.044 3.956 26 O -0.373 6.373 27 N -0.244 5.244 28 H 0.087 0.913 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.207 0.793 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.034 0.966 42 H 0.255 0.745 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.083 0.917 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.910 -13.819 -13.543 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.049 5.049 4 N -0.133 5.133 5 C -0.151 4.151 6 C -0.199 4.199 7 C 0.401 3.599 8 O -0.408 6.408 9 N -0.328 5.328 10 C -0.008 4.008 11 C -0.156 4.156 12 C 0.044 3.956 13 C -0.026 4.026 14 C 0.037 3.963 15 N -0.319 5.319 16 C -0.380 4.380 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.549 5.549 20 Si 0.733 3.267 21 H -0.213 1.213 22 H -0.204 1.204 23 H -0.217 1.217 24 C -0.016 4.016 25 C -0.034 4.034 26 O -0.292 6.292 27 N -0.092 5.092 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.224 0.776 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.160 -14.704 -13.758 22.122 hybrid contribution 1.300 1.439 -0.017 1.939 sum -7.859 -13.265 -13.775 20.676 Atomic orbital electron populations 1.22192 0.92898 1.04010 1.03892 1.22074 0.96217 0.74226 1.06040 1.48297 1.43820 1.13468 0.99319 1.73970 1.18017 1.05530 1.15763 1.24817 1.01495 0.95104 0.93694 1.23080 1.08653 0.93490 0.94674 1.16224 0.78430 0.84999 0.80249 1.90819 1.48529 1.26895 1.74591 1.48379 1.63812 1.16335 1.04312 1.22061 1.00229 0.86678 0.91839 1.22583 1.03839 0.94564 0.94580 1.22642 0.83662 0.93326 0.95982 1.22848 1.00384 0.92096 0.87275 1.21099 1.00411 0.83951 0.90876 1.44114 1.01268 1.02148 1.84380 1.19205 0.93126 0.94326 1.31348 0.91269 1.25007 0.99542 0.98073 0.96954 1.70007 1.27952 1.23523 1.33437 0.86271 0.83578 0.79719 0.77138 1.21288 1.20380 1.21722 1.21585 0.87584 0.97767 0.94650 1.23118 1.00037 0.81306 0.98949 1.87632 1.25074 1.21720 1.94790 1.74513 1.14788 1.04639 1.15273 0.89451 0.91164 0.91386 0.87202 0.87078 0.77646 0.91074 0.91345 0.88960 0.89234 0.89645 0.89938 0.88424 0.94827 0.93516 0.95493 0.91854 0.89912 0.93413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.88 10.24 37.16 0.38 -0.50 16 2 C 0.13 0.80 7.24 -4.04 -0.03 0.77 16 3 N -0.15 -1.59 3.94 -10.61 -0.04 -1.63 16 4 N -0.29 -3.54 12.01 30.89 0.37 -3.16 16 5 C 0.03 0.42 12.04 -16.84 -0.20 0.22 16 6 C -0.04 -0.53 7.03 -82.68 -0.58 -1.11 16 7 C 0.62 10.86 7.86 -12.35 -0.10 10.76 16 8 O -0.53 -10.81 17.22 5.31 0.09 -10.71 16 9 N -0.60 -10.29 3.33 -171.88 -0.57 -10.87 16 10 C 0.11 1.67 5.57 -2.96 -0.02 1.65 16 11 C -0.12 -1.79 6.12 -25.25 -0.15 -1.95 16 12 C 0.09 1.63 0.83 -89.85 -0.07 1.56 16 13 C 0.10 1.85 5.84 -2.86 -0.02 1.83 16 14 C 0.16 3.71 4.04 -4.12 -0.02 3.70 16 15 N -0.60 -14.54 2.99 -172.49 -0.52 -15.06 16 16 C -0.25 -6.70 9.66 -15.06 -0.15 -6.85 16 17 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 18 C 0.00 0.07 4.96 -17.43 -0.09 -0.01 16 19 N -0.90 -25.30 11.12 55.49 0.62 -24.68 16 20 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.11 2.30 6.72 -3.54 -0.02 2.27 16 25 C 0.04 0.80 6.78 37.30 0.25 1.06 16 26 O -0.37 -7.21 10.28 -35.22 -0.36 -7.57 16 27 N -0.24 -3.18 9.72 33.42 0.32 -2.86 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.21 2.18 8.06 -52.49 -0.42 1.76 16 34 H 0.07 1.01 7.69 -51.93 -0.40 0.61 16 35 H 0.07 0.90 7.79 -51.93 -0.40 0.50 16 36 H 0.09 1.34 8.00 -51.93 -0.42 0.93 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.09 1.81 6.00 -51.93 -0.31 1.50 16 39 H 0.08 1.69 7.80 -51.93 -0.40 1.29 16 40 H 0.10 2.44 5.92 -51.93 -0.31 2.14 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 45 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 46 H 0.05 0.91 6.25 -51.93 -0.32 0.59 16 LS Contribution 371.39 15.07 5.60 5.60 Total: -1.00 -32.83 371.39 -7.09 -39.92 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -6.76 Total: 1.21 kcal Atomic # 6 Polarization: 14.20 SS G_CDS: -0.81 Total: 13.39 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.18 Total: -58.26 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.27 Total: -18.28 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.83 -7.09 -39.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972368580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.731 kcal (2) G-P(sol) polarization free energy of solvation -32.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds