Wall clock time and date at job start Tue Mar 31 2020 19:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46497 * 109.47228 * 2 1 4 4 N 1.28515 * 124.44593 * 269.97375 * 3 2 1 5 5 C 1.31135 * 109.05917 * 179.73760 * 4 3 2 6 6 C 1.40919 * 105.77362 * 0.43117 * 5 4 3 7 7 C 1.47806 * 127.23449 * 179.83595 * 6 5 4 8 8 O 1.21564 * 120.00010 * 359.71313 * 7 6 5 9 9 N 1.34772 * 119.99910 * 179.71092 * 7 6 5 10 10 C 1.47079 * 125.63150 * 359.96142 * 9 7 6 11 11 C 1.54464 * 107.30106 * 181.03853 * 10 9 7 12 12 C 1.54353 * 102.86926 * 21.47894 * 11 10 9 13 13 C 1.47566 * 125.62570 * 179.97438 * 9 7 6 14 14 C 1.51950 * 110.49229 * 207.76038 * 12 11 10 15 15 N 1.47333 * 108.61743 * 186.50487 * 14 12 11 16 16 C 1.36940 * 121.07420 * 229.15867 * 15 14 12 17 17 H 1.08001 * 120.00121 * 154.16402 * 16 15 14 18 18 C 1.38810 * 119.99942 * 334.16633 * 16 15 14 19 19 N 1.31620 * 120.00034 * 343.40932 * 18 16 15 20 20 Si 1.86799 * 120.00217 * 163.40772 * 18 16 15 21 21 H 1.48499 * 109.47368 * 270.00258 * 20 18 16 22 22 H 1.48505 * 109.46838 * 29.99888 * 20 18 16 23 23 H 1.48494 * 109.47238 * 149.99918 * 20 18 16 24 24 C 1.47160 * 117.85013 * 48.88707 * 15 14 12 25 25 C 1.53282 * 108.56229 * 309.02684 * 24 15 14 26 26 O 1.41892 * 110.75826 * 83.68206 * 12 11 10 27 27 N 1.28586 * 124.44265 * 90.00489 * 3 2 1 28 28 H 1.09000 * 109.47353 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46755 * 300.00087 * 1 2 3 30 30 H 1.08994 * 109.47066 * 59.99646 * 1 2 3 31 31 H 1.08998 * 109.46755 * 239.99913 * 2 1 3 32 32 H 1.09003 * 109.46888 * 120.00106 * 2 1 3 33 33 H 1.07996 * 127.10978 * 180.29281 * 5 4 3 34 34 H 1.08996 * 109.87772 * 300.46823 * 10 9 7 35 35 H 1.09006 * 109.87771 * 61.46255 * 10 9 7 36 36 H 1.09001 * 110.73338 * 263.13246 * 11 10 9 37 37 H 1.09004 * 110.73253 * 139.82458 * 11 10 9 38 38 H 1.09000 * 110.37739 * 37.82665 * 13 9 7 39 39 H 1.09003 * 110.47865 * 275.52433 * 13 9 7 40 40 H 1.09000 * 109.62249 * 66.68092 * 14 12 11 41 41 H 1.08997 * 109.51898 * 306.26941 * 14 12 11 42 42 H 0.97000 * 120.00551 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.62081 * 68.75462 * 24 15 14 44 44 H 1.09003 * 109.61551 * 189.30936 * 24 15 14 45 45 H 1.09004 * 109.50923 * 172.90420 * 25 24 15 46 46 H 1.08995 * 109.51741 * 293.04925 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.2612 2.0664 -1.0598 5 6 2.6771 3.2603 -0.7119 6 6 2.6859 3.2674 0.6973 7 6 3.0804 4.3824 1.5836 8 8 3.4530 5.4362 1.1056 9 7 3.0270 4.2309 2.9217 10 6 2.5965 3.0159 3.6299 11 6 2.6743 3.3144 5.1435 12 6 2.6221 4.8563 5.1929 13 6 3.3906 5.2568 3.9182 14 6 3.3403 5.3736 6.4279 15 7 3.1322 6.8293 6.5179 16 6 4.1839 7.6825 6.7209 17 1 4.1218 8.7063 6.3827 18 6 5.3299 7.2314 7.3612 19 7 5.2991 6.1139 8.0558 20 14 6.9160 8.2103 7.2369 21 1 7.6922 7.7479 6.0584 22 1 6.5968 9.6526 7.0844 23 1 7.7199 8.0089 8.4691 24 6 1.7583 7.3374 6.3766 25 6 1.1457 6.7404 5.1046 26 8 1.2807 5.3159 5.1402 27 7 2.2609 2.0668 1.0604 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.9574 4.0699 -1.3694 34 1 1.5716 2.7690 3.3531 35 1 3.2580 2.1866 3.3790 36 1 3.6112 2.9464 5.5617 37 1 1.8210 2.8824 5.6664 38 1 3.0753 6.2436 3.5793 39 1 4.4648 5.2452 4.1029 40 1 4.4061 5.1594 6.3482 41 1 2.9335 4.8890 7.3155 42 1 6.0998 5.7988 8.5036 43 1 1.1670 7.0395 7.2424 44 1 1.7764 8.4245 6.2987 45 1 0.0896 7.0047 5.0505 46 1 1.6653 7.1337 4.2310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972368580.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:47:50 Heat of formation + Delta-G solvation = 50.883480 kcal Electronic energy + Delta-G solvation = -30233.723218 eV Core-core repulsion = 26161.768709 eV Total energy + Delta-G solvation = -4071.954510 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.73161 -41.61435 -39.98736 -37.60031 -36.27162 -35.80979 -33.99438 -33.27500 -32.95055 -31.41550 -30.47345 -29.34104 -27.84850 -26.01833 -25.11269 -24.85573 -23.99810 -22.73946 -22.30995 -20.92321 -20.36209 -18.99451 -18.50474 -18.30519 -17.81274 -17.55251 -16.83351 -16.61649 -16.45739 -16.12490 -15.94340 -15.70349 -15.21920 -15.13832 -15.04968 -14.74881 -14.55493 -14.03760 -13.76980 -13.61809 -13.35574 -13.12095 -13.02787 -12.97455 -12.85484 -12.68199 -12.53353 -12.31949 -12.29372 -12.17829 -12.13220 -11.98578 -11.77337 -11.51706 -11.42426 -11.16295 -10.78868 -10.54404 -10.51815 -9.74272 -8.72898 -7.90346 -5.34996 0.17479 0.84547 1.16780 1.45381 1.48384 1.55280 1.81315 2.07501 2.47199 2.73619 2.81237 3.22804 3.36016 3.56086 3.61393 3.78120 3.92119 3.94368 4.03320 4.04102 4.21674 4.26779 4.27223 4.32212 4.50893 4.54340 4.58770 4.64490 4.70499 4.73631 4.76731 4.81326 4.90425 4.94095 5.02236 5.05635 5.11366 5.18726 5.20525 5.23659 5.51736 5.57033 5.62033 6.28288 6.30737 6.38568 6.83125 7.07184 7.07912 7.75373 8.29208 9.15948 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.003150 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.886109 B = 8887.173046 C = 9298.956140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.130 5.130 4 N -0.294 5.294 5 C 0.030 3.970 6 C -0.063 4.063 7 C 0.614 3.386 8 O -0.570 6.570 9 N -0.599 5.599 10 C 0.123 3.877 11 C -0.110 4.110 12 C 0.092 3.908 13 C 0.105 3.895 14 C 0.174 3.826 15 N -0.614 5.614 16 C -0.261 4.261 17 H 0.067 0.933 18 C -0.043 4.043 19 N -0.930 5.930 20 Si 0.961 3.039 21 H -0.288 1.288 22 H -0.271 1.271 23 H -0.292 1.292 24 C 0.107 3.893 25 C 0.050 3.950 26 O -0.373 6.373 27 N -0.240 5.240 28 H 0.117 0.883 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.220 0.780 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.013 0.987 42 H 0.252 0.748 43 H 0.026 0.974 44 H 0.069 0.931 45 H 0.120 0.880 46 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.085 -15.785 -14.800 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.001 3.999 3 N -0.036 5.036 4 N -0.134 5.134 5 C -0.153 4.153 6 C -0.224 4.224 7 C 0.401 3.599 8 O -0.448 6.448 9 N -0.330 5.330 10 C 0.001 3.999 11 C -0.149 4.149 12 C 0.050 3.950 13 C -0.018 4.018 14 C 0.048 3.952 15 N -0.339 5.339 16 C -0.391 4.391 17 H 0.085 0.915 18 C -0.239 4.239 19 N -0.576 5.576 20 Si 0.789 3.211 21 H -0.215 1.215 22 H -0.196 1.196 23 H -0.218 1.218 24 C -0.018 4.018 25 C -0.027 4.027 26 O -0.292 6.292 27 N -0.090 5.090 28 H 0.136 0.864 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.151 0.849 32 H 0.150 0.850 33 H 0.237 0.763 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.031 0.969 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.087 0.913 45 H 0.137 0.863 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.367 -16.681 -15.024 24.728 hybrid contribution 1.580 1.974 0.354 2.553 sum -8.787 -14.708 -14.670 22.555 Atomic orbital electron populations 1.22174 0.92033 1.05602 1.02573 1.22682 0.96894 0.72008 1.08305 1.48920 1.41710 1.14421 0.98530 1.73999 1.18093 1.05259 1.16030 1.25080 1.01170 0.95837 0.93181 1.22640 1.11246 0.93596 0.94872 1.16580 0.77602 0.85345 0.80344 1.90784 1.50167 1.28605 1.75248 1.48414 1.63794 1.16582 1.04223 1.22142 1.01186 0.85939 0.90653 1.22636 1.05102 0.91495 0.95621 1.22438 0.83143 0.95706 0.93703 1.22506 0.99172 0.91907 0.88212 1.20864 0.99135 0.83354 0.91853 1.44374 1.02357 1.02637 1.84509 1.19456 0.94177 0.94659 1.30789 0.91514 1.25655 1.02007 0.99173 0.97103 1.70131 1.28312 1.24796 1.34337 0.85361 0.80196 0.78857 0.76642 1.21474 1.19588 1.21838 1.21733 0.85896 0.98363 0.95818 1.23132 1.01847 0.80731 0.96997 1.87639 1.24836 1.22167 1.94551 1.74439 1.14447 1.04092 1.16047 0.86415 0.92614 0.92480 0.84865 0.85005 0.76330 0.90036 0.89480 0.88363 0.87301 0.91844 0.91944 0.91097 0.96933 0.93863 0.95641 0.91250 0.86264 0.94291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 71.98 0.74 -0.46 16 2 C 0.12 1.01 7.24 86.38 0.63 1.63 16 3 N -0.13 -2.50 3.94 -187.49 -0.74 -3.24 16 4 N -0.29 -6.47 12.01 -56.17 -0.67 -7.14 16 5 C 0.03 0.74 12.04 85.45 1.03 1.77 16 6 C -0.06 -1.80 7.03 42.24 0.30 -1.50 16 7 C 0.61 21.69 7.86 86.78 0.68 22.37 16 8 O -0.57 -23.69 17.22 -3.92 -0.07 -23.75 16 9 N -0.60 -20.52 3.33 -815.97 -2.72 -23.24 16 10 C 0.12 3.34 5.57 86.77 0.48 3.82 16 11 C -0.11 -3.23 6.12 31.55 0.19 -3.03 16 12 C 0.09 3.49 0.83 -10.29 -0.01 3.49 16 13 C 0.10 4.15 5.84 86.56 0.51 4.66 16 14 C 0.17 8.15 4.04 85.87 0.35 8.49 16 15 N -0.61 -30.65 2.99 -699.65 -2.09 -32.74 16 16 C -0.26 -14.25 9.66 84.03 0.81 -13.43 16 17 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 18 C -0.04 -2.39 4.96 84.86 0.42 -1.97 16 19 N -0.93 -53.31 11.12 21.65 0.24 -53.07 16 20 Si 0.96 44.89 29.59 68.60 2.03 46.92 16 21 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 C 0.11 4.46 6.72 86.35 0.58 5.04 16 25 C 0.05 1.80 6.78 72.08 0.49 2.29 16 26 O -0.37 -14.01 10.28 -148.95 -1.53 -15.54 16 27 N -0.24 -5.75 9.72 -48.17 -0.47 -6.21 16 28 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.22 4.49 8.06 -2.91 -0.02 4.46 16 34 H 0.08 2.09 7.69 -2.39 -0.02 2.08 16 35 H 0.09 2.08 7.79 -2.38 -0.02 2.06 16 36 H 0.10 2.76 8.00 -2.39 -0.02 2.75 16 37 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.06 2.78 6.00 -2.39 -0.01 2.77 16 39 H 0.06 2.69 7.80 -2.39 -0.02 2.67 16 40 H 0.07 3.69 5.92 -2.39 -0.01 3.68 16 41 H 0.01 0.63 8.14 -2.39 -0.02 0.62 16 42 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 43 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 2.74 7.96 -2.39 -0.02 2.73 16 45 H 0.12 3.41 8.14 -2.39 -0.02 3.39 16 46 H 0.04 1.48 6.25 -2.39 -0.01 1.47 16 Total: -1.00 -72.43 371.39 2.16 -70.27 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.99 Total: 14.60 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 7.19 Total: 33.15 kcal Atomic # 7 Polarization: -119.19 SS G_CDS: -6.45 Total: -125.65 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -1.60 Total: -39.29 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -72.43 2.16 -70.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972368580.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.153 kcal (2) G-P(sol) polarization free energy of solvation -72.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds