Wall clock time and date at job start Tue Mar 31 2020 19:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47307 * 2 1 4 4 C 1.35313 * 125.87471 * 124.99648 * 3 2 1 5 5 C 1.35347 * 106.17711 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.75012 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46799 * 125.00354 * 6 5 4 8 8 O 1.21278 * 120.00109 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99629 * 180.02562 * 7 6 5 10 10 C 1.47137 * 121.06132 * 0.02562 * 9 7 6 11 11 C 1.53223 * 108.72646 * 127.68522 * 10 9 7 12 12 O 1.43118 * 109.35471 * 54.19296 * 11 10 9 13 13 C 1.42353 * 113.99314 * 300.22319 * 12 11 10 14 14 C 1.52915 * 114.29884 * 285.04719 * 13 12 11 15 15 N 1.47166 * 87.84964 * 271.72443 * 14 13 12 16 16 C 1.36930 * 136.00334 * 153.32674 * 15 14 13 17 17 H 1.08004 * 119.99699 * 354.27155 * 16 15 14 18 18 C 1.38812 * 120.00284 * 174.27329 * 16 15 14 19 19 N 1.31615 * 120.00368 * 185.32852 * 18 16 15 20 20 Si 1.86805 * 119.99570 * 5.33572 * 18 16 15 21 21 H 1.48503 * 109.46598 * 185.37040 * 20 18 16 22 22 H 1.48495 * 109.47085 * 305.36485 * 20 18 16 23 23 H 1.48494 * 109.47362 * 65.36705 * 20 18 16 24 24 C 1.47183 * 87.99696 * 333.57662 * 15 14 13 25 25 C 1.47358 * 121.06000 * 179.97438 * 9 7 6 26 26 N 1.33770 * 106.49697 * 0.26285 * 5 4 3 27 27 N 1.28636 * 108.88723 * 359.56152 * 26 5 4 28 28 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47455 * 300.00423 * 1 2 3 30 30 H 1.08997 * 109.47025 * 60.00356 * 1 2 3 31 31 H 1.08994 * 109.47656 * 239.99567 * 2 1 3 32 32 H 1.09002 * 109.46961 * 119.99167 * 2 1 3 33 33 H 1.07999 * 126.90508 * 359.94305 * 4 3 2 34 34 H 1.09004 * 109.47117 * 5.00255 * 6 5 4 35 35 H 1.09001 * 109.46973 * 245.00047 * 6 5 4 36 36 H 1.08997 * 109.59329 * 247.45378 * 10 9 7 37 37 H 1.08991 * 109.59640 * 7.91261 * 10 9 7 38 38 H 1.08996 * 109.49198 * 174.15950 * 11 10 9 39 39 H 1.09000 * 109.48909 * 294.23331 * 11 10 9 40 40 H 1.09000 * 113.49392 * 156.97408 * 14 13 12 41 41 H 1.09004 * 113.48835 * 26.46712 * 14 13 12 42 42 H 0.97002 * 119.99753 * 354.99129 * 19 18 16 43 43 H 1.08993 * 113.48874 * 141.16922 * 24 15 14 44 44 H 1.08999 * 113.49290 * 271.68301 * 24 15 14 45 45 H 1.09004 * 109.74635 * 108.63092 * 25 9 7 46 46 H 1.09000 * 109.79022 * 347.93550 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9192 0.8982 5 6 3.0541 3.2076 0.5241 6 6 3.9229 4.2325 1.2066 7 6 4.8950 4.8103 0.2105 8 8 4.8838 4.4272 -0.9401 9 7 5.7776 5.7521 0.5987 10 6 5.8128 6.2326 1.9889 11 6 7.2490 6.1221 2.5114 12 8 8.1322 6.8108 1.6204 13 6 8.1229 6.3043 0.2900 14 6 8.8622 4.9770 0.1168 15 7 10.0888 5.7548 -0.1204 16 6 11.4330 5.5469 0.0377 17 1 11.7875 4.6447 0.5140 18 6 12.3399 6.4957 -0.4141 19 7 13.6318 6.2505 -0.3579 20 14 11.7267 8.1207 -1.1017 21 1 12.8753 8.8988 -1.6315 22 1 10.7578 7.8608 -2.1966 23 1 11.0598 8.8943 -0.0238 24 6 9.2366 6.8565 -0.5961 25 6 6.7389 6.3326 -0.3555 26 7 2.3028 3.3941 -0.5668 27 7 1.7061 2.2915 -0.8549 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.3261 1.4207 1.7437 34 1 4.4738 3.7587 2.0192 35 1 3.2973 5.0297 1.6082 36 1 5.4901 7.2730 2.0244 37 1 5.1522 5.6214 2.6038 38 1 7.3107 6.5701 3.5031 39 1 7.5356 5.0719 2.5679 40 1 8.5341 4.4071 -0.7525 41 1 8.8971 4.3773 1.0263 42 1 13.9534 5.4390 0.0652 43 1 9.5872 7.8413 -0.2876 44 1 9.0113 6.8028 -1.6612 45 1 6.4587 7.3616 -0.5805 46 1 6.7486 5.7447 -1.2733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053353291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:48 Heat of formation + Delta-G solvation = 105.710276 kcal Electronic energy + Delta-G solvation = -29326.288821 eV Core-core repulsion = 25256.711779 eV Total energy + Delta-G solvation = -4069.577041 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.47139 -40.62672 -38.99880 -36.62468 -35.85937 -34.59208 -33.02644 -32.40099 -31.19134 -30.43036 -28.95035 -27.75206 -25.79974 -25.59756 -25.04492 -23.41979 -22.30003 -21.76761 -21.04052 -19.46336 -18.95477 -17.66437 -17.49323 -17.36308 -16.61218 -16.48440 -15.90566 -15.73215 -15.26130 -14.92301 -14.86313 -14.72631 -14.24830 -13.96926 -13.86725 -13.63517 -13.28202 -13.20318 -13.05728 -13.02149 -12.78188 -12.35829 -12.24947 -12.05142 -11.72252 -11.67940 -11.35738 -11.10602 -10.94156 -10.76935 -10.47006 -10.42133 -10.26312 -9.91213 -9.77116 -9.35982 -9.16319 -9.03811 -8.86795 -8.42607 -7.11028 -6.27231 -3.18022 1.35550 2.03053 2.31186 2.62922 2.90055 3.45833 3.50448 3.68442 3.83257 3.89051 4.08922 4.27047 4.40426 4.45681 4.53882 4.62547 4.64517 4.72873 4.80450 4.85675 4.90436 4.96511 5.02136 5.04027 5.12467 5.18498 5.24537 5.44979 5.49073 5.58083 5.62571 5.63600 5.73928 5.84954 5.92312 6.09016 6.18005 6.21170 6.27719 6.32347 6.41302 6.52570 7.09448 7.32005 7.53946 8.16247 8.26556 8.35589 9.01181 9.53647 10.37851 11.25485 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023303 B = 0.002485 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.269887 B =11263.074689 C =11601.769992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.294 5.294 4 C -0.045 4.045 5 C -0.007 4.007 6 C -0.052 4.052 7 C 0.519 3.481 8 O -0.518 6.518 9 N -0.615 5.615 10 C 0.073 3.927 11 C 0.045 3.955 12 O -0.335 6.335 13 C 0.058 3.942 14 C 0.107 3.893 15 N -0.619 5.619 16 C -0.299 4.299 17 H 0.082 0.918 18 C -0.026 4.026 19 N -0.935 5.935 20 Si 1.069 2.931 21 H -0.295 1.295 22 H -0.286 1.286 23 H -0.290 1.290 24 C 0.114 3.886 25 C 0.104 3.896 26 N -0.239 5.239 27 N -0.085 5.085 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.190 0.810 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.045 0.955 42 H 0.259 0.741 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.987 -9.608 8.948 30.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.088 5.088 4 C -0.196 4.196 5 C -0.145 4.145 6 C -0.093 4.093 7 C 0.305 3.695 8 O -0.393 6.393 9 N -0.350 5.350 10 C -0.051 4.051 11 C -0.033 4.033 12 O -0.253 6.253 13 C 0.016 3.984 14 C -0.020 4.020 15 N -0.347 5.347 16 C -0.425 4.425 17 H 0.100 0.900 18 C -0.224 4.224 19 N -0.578 5.578 20 Si 0.902 3.098 21 H -0.222 1.222 22 H -0.213 1.213 23 H -0.218 1.218 24 C -0.012 4.012 25 C -0.020 4.020 26 N -0.106 5.106 27 N -0.065 5.065 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.207 0.793 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -27.941 -8.032 6.418 29.773 hybrid contribution 0.015 -2.196 1.841 2.865 sum -27.926 -10.228 8.259 30.866 Atomic orbital electron populations 1.22079 0.92649 1.03705 1.04074 1.22093 0.96935 0.76560 1.05325 1.47434 1.30742 1.12058 1.18557 1.23293 1.00755 0.95362 1.00237 1.21195 1.02434 0.93978 0.96927 1.19897 0.95308 0.97035 0.97091 1.20284 0.80973 0.79005 0.89189 1.90759 1.69715 1.59363 1.19459 1.48170 1.35563 1.40621 1.10678 1.22466 0.99027 1.01125 0.82462 1.22922 0.88021 0.98327 0.94027 1.87995 1.62650 1.56333 1.18330 1.23036 0.92519 0.98253 0.84549 1.22803 0.86941 0.93503 0.98714 1.45800 1.00992 1.12119 1.75803 1.20094 0.77800 1.06664 1.37913 0.90035 1.25738 0.93745 1.02991 0.99911 1.70927 1.12262 1.29423 1.45196 0.83719 0.74027 0.75880 0.76194 1.22203 1.21344 1.21776 1.22643 0.87747 0.95138 0.95632 1.22107 0.87021 0.99428 0.93403 1.75118 1.07644 1.15721 1.12070 1.78301 1.20921 0.92755 1.14487 0.89875 0.91756 0.90585 0.88236 0.87668 0.79322 0.87190 0.87159 0.90219 0.89023 0.87750 0.92619 0.93583 0.93674 0.93044 0.91716 0.91992 0.90637 0.87753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.64 10.04 37.16 0.37 -0.27 16 2 C 0.11 0.49 7.18 -4.04 -0.03 0.47 16 3 N -0.29 -2.71 3.44 -61.27 -0.21 -2.92 16 4 C -0.05 -0.39 11.49 -17.05 -0.20 -0.58 16 5 C -0.01 -0.08 6.00 -82.78 -0.50 -0.57 16 6 C -0.05 -0.47 4.65 -29.04 -0.13 -0.60 16 7 C 0.52 7.04 7.71 -10.98 -0.08 6.95 16 8 O -0.52 -9.47 15.11 5.56 0.08 -9.39 16 9 N -0.61 -7.88 3.03 -172.51 -0.52 -8.40 16 10 C 0.07 0.67 6.50 -3.58 -0.02 0.65 16 11 C 0.04 0.53 6.90 37.27 0.26 0.79 16 12 O -0.34 -5.96 10.53 -35.23 -0.37 -6.33 16 13 C 0.06 1.07 1.27 -90.98 -0.12 0.95 16 14 C 0.11 2.24 7.91 -8.21 -0.06 2.17 16 15 N -0.62 -15.90 3.70 -184.94 -0.68 -16.59 16 16 C -0.30 -8.90 11.08 -15.06 -0.17 -9.06 16 17 H 0.08 2.55 8.05 -52.48 -0.42 2.13 16 18 C -0.03 -0.78 5.50 -17.43 -0.10 -0.88 16 19 N -0.94 -30.18 13.70 55.49 0.76 -29.42 16 20 Si 1.07 27.52 25.15 -169.99 -4.27 23.25 16 21 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 22 H -0.29 -6.81 6.18 56.52 0.35 -6.46 16 23 H -0.29 -7.12 6.53 56.52 0.37 -6.75 16 24 C 0.11 2.51 5.10 -8.34 -0.04 2.47 16 25 C 0.10 1.59 5.83 -3.71 -0.02 1.57 16 26 N -0.24 -3.58 11.84 33.29 0.39 -3.19 16 27 N -0.09 -1.13 12.91 60.35 0.78 -0.35 16 28 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 31 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 0.15 8.07 -51.93 -0.42 -0.27 16 33 H 0.19 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.11 0.61 7.67 -51.93 -0.40 0.21 16 35 H 0.11 0.76 7.99 -51.93 -0.41 0.34 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.50 6.03 -51.93 -0.31 0.19 16 38 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.06 0.68 7.30 -51.93 -0.38 0.30 16 40 H 0.05 0.96 7.93 -51.93 -0.41 0.54 16 41 H 0.05 0.92 7.36 -51.93 -0.38 0.54 16 42 H 0.26 8.26 8.73 -40.82 -0.36 7.91 16 43 H 0.07 1.48 4.69 -51.93 -0.24 1.24 16 44 H 0.06 1.29 7.62 -51.93 -0.40 0.90 16 45 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.10 1.74 6.89 -51.93 -0.36 1.38 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -41.38 369.74 -6.07 -47.45 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -6.76 Total: -3.74 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -0.84 Total: 4.06 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.52 Total: -60.87 kcal Atomic # 8 Polarization: -15.42 SS G_CDS: -0.29 Total: -15.71 kcal Atomic # 14 Polarization: 27.52 SS G_CDS: -4.27 Total: 23.25 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -41.38 -6.07 -47.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053353291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.160 kcal (2) G-P(sol) polarization free energy of solvation -41.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds