Wall clock time and date at job start Tue Mar 31 2020 19:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.47307 * 2 1 4 4 C 1.35313 * 125.87471 * 124.99648 * 3 2 1 5 5 C 1.35347 * 106.17711 * 179.97438 * 4 3 2 6 6 C 1.50699 * 126.75012 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46799 * 125.00354 * 6 5 4 8 8 O 1.21278 * 120.00109 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99629 * 180.02562 * 7 6 5 10 10 C 1.47137 * 121.06132 * 0.02562 * 9 7 6 11 11 C 1.53223 * 108.72646 * 127.68522 * 10 9 7 12 12 O 1.43118 * 109.35471 * 54.19296 * 11 10 9 13 13 C 1.42353 * 113.99314 * 300.22319 * 12 11 10 14 14 C 1.52915 * 114.29884 * 285.04719 * 13 12 11 15 15 N 1.47166 * 87.84964 * 271.72443 * 14 13 12 16 16 C 1.36930 * 136.00334 * 153.32674 * 15 14 13 17 17 H 1.08004 * 119.99699 * 354.27155 * 16 15 14 18 18 C 1.38812 * 120.00284 * 174.27329 * 16 15 14 19 19 N 1.31615 * 120.00368 * 185.32852 * 18 16 15 20 20 Si 1.86805 * 119.99570 * 5.33572 * 18 16 15 21 21 H 1.48503 * 109.46598 * 185.37040 * 20 18 16 22 22 H 1.48495 * 109.47085 * 305.36485 * 20 18 16 23 23 H 1.48494 * 109.47362 * 65.36705 * 20 18 16 24 24 C 1.47183 * 87.99696 * 333.57662 * 15 14 13 25 25 C 1.47358 * 121.06000 * 179.97438 * 9 7 6 26 26 N 1.33770 * 106.49697 * 0.26285 * 5 4 3 27 27 N 1.28636 * 108.88723 * 359.56152 * 26 5 4 28 28 H 1.08998 * 109.47051 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47455 * 300.00423 * 1 2 3 30 30 H 1.08997 * 109.47025 * 60.00356 * 1 2 3 31 31 H 1.08994 * 109.47656 * 239.99567 * 2 1 3 32 32 H 1.09002 * 109.46961 * 119.99167 * 2 1 3 33 33 H 1.07999 * 126.90508 * 359.94305 * 4 3 2 34 34 H 1.09004 * 109.47117 * 5.00255 * 6 5 4 35 35 H 1.09001 * 109.46973 * 245.00047 * 6 5 4 36 36 H 1.08997 * 109.59329 * 247.45378 * 10 9 7 37 37 H 1.08991 * 109.59640 * 7.91261 * 10 9 7 38 38 H 1.08996 * 109.49198 * 174.15950 * 11 10 9 39 39 H 1.09000 * 109.48909 * 294.23331 * 11 10 9 40 40 H 1.09000 * 113.49392 * 156.97408 * 14 13 12 41 41 H 1.09004 * 113.48835 * 26.46712 * 14 13 12 42 42 H 0.97002 * 119.99753 * 354.99129 * 19 18 16 43 43 H 1.08993 * 113.48874 * 141.16922 * 24 15 14 44 44 H 1.08999 * 113.49290 * 271.68301 * 24 15 14 45 45 H 1.09004 * 109.74635 * 108.63092 * 25 9 7 46 46 H 1.09000 * 109.79022 * 347.93550 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9192 0.8982 5 6 3.0541 3.2076 0.5241 6 6 3.9229 4.2325 1.2066 7 6 4.8950 4.8103 0.2105 8 8 4.8838 4.4272 -0.9401 9 7 5.7776 5.7521 0.5987 10 6 5.8128 6.2326 1.9889 11 6 7.2490 6.1221 2.5114 12 8 8.1322 6.8108 1.6204 13 6 8.1229 6.3043 0.2900 14 6 8.8622 4.9770 0.1168 15 7 10.0888 5.7548 -0.1204 16 6 11.4330 5.5469 0.0377 17 1 11.7875 4.6447 0.5140 18 6 12.3399 6.4957 -0.4141 19 7 13.6318 6.2505 -0.3579 20 14 11.7267 8.1207 -1.1017 21 1 12.8753 8.8988 -1.6315 22 1 10.7578 7.8608 -2.1966 23 1 11.0598 8.8943 -0.0238 24 6 9.2366 6.8565 -0.5961 25 6 6.7389 6.3326 -0.3555 26 7 2.3028 3.3941 -0.5668 27 7 1.7061 2.2915 -0.8549 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.3261 1.4207 1.7437 34 1 4.4738 3.7587 2.0192 35 1 3.2973 5.0297 1.6082 36 1 5.4901 7.2730 2.0244 37 1 5.1522 5.6214 2.6038 38 1 7.3107 6.5701 3.5031 39 1 7.5356 5.0719 2.5679 40 1 8.5341 4.4071 -0.7525 41 1 8.8971 4.3773 1.0263 42 1 13.9534 5.4390 0.0652 43 1 9.5872 7.8413 -0.2876 44 1 9.0113 6.8028 -1.6612 45 1 6.4587 7.3616 -0.5805 46 1 6.7486 5.7447 -1.2733 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053353291.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:48 Heat of formation + Delta-G solvation = 71.736181 kcal Electronic energy + Delta-G solvation = -29327.762048 eV Core-core repulsion = 25256.711779 eV Total energy + Delta-G solvation = -4071.050269 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.17991 -41.89717 -40.24363 -38.00840 -36.42220 -35.74131 -34.64602 -33.70778 -31.84398 -31.66509 -29.81704 -29.20842 -27.37475 -27.11761 -25.54361 -24.49599 -23.46496 -22.78557 -22.09184 -20.84999 -19.98147 -19.60694 -18.39332 -18.19185 -17.85080 -17.28388 -17.26167 -16.76358 -16.29597 -16.18387 -15.74926 -15.52204 -15.43632 -15.31978 -15.13871 -15.02395 -14.65121 -14.40598 -14.22881 -13.64053 -13.49021 -13.30785 -13.17097 -12.97633 -12.87007 -12.72644 -12.57951 -12.39010 -12.30571 -12.16640 -11.83134 -11.64824 -11.43392 -11.26996 -11.07392 -10.96679 -10.82952 -10.71124 -10.08904 -9.55905 -9.22425 -8.67835 -5.50115 0.70784 1.38276 1.43979 1.48747 1.59834 1.66943 1.68045 1.98714 2.52546 2.57136 2.87153 3.16103 3.31844 3.36403 3.55359 3.71414 3.81970 3.91729 3.97965 4.02845 4.16074 4.19493 4.28543 4.31893 4.36367 4.44332 4.48493 4.48943 4.55398 4.57988 4.61562 4.68947 4.74425 4.75517 4.83384 4.91993 4.99686 5.02255 5.10461 5.13992 5.25710 5.36609 5.76531 5.89915 6.27823 6.40182 6.65310 7.20190 7.27785 7.59992 8.20423 8.87410 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023303 B = 0.002485 C = 0.002413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.269887 B =11263.074689 C =11601.769992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.028 4.028 5 C -0.035 4.035 6 C -0.043 4.043 7 C 0.514 3.486 8 O -0.576 6.576 9 N -0.615 5.615 10 C 0.075 3.925 11 C 0.034 3.966 12 O -0.365 6.365 13 C 0.091 3.909 14 C 0.106 3.894 15 N -0.652 5.652 16 C -0.288 4.288 17 H 0.049 0.951 18 C -0.085 4.085 19 N -0.969 5.969 20 Si 1.107 2.893 21 H -0.301 1.301 22 H -0.258 1.258 23 H -0.272 1.272 24 C 0.102 3.898 25 C 0.111 3.889 26 N -0.293 5.293 27 N -0.129 5.129 28 H 0.109 0.891 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.102 0.898 32 H 0.146 0.854 33 H 0.239 0.761 34 H 0.155 0.845 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.141 0.859 38 H 0.135 0.865 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.046 0.954 42 H 0.245 0.755 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.092 0.908 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.981 -9.812 11.501 34.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.018 4.018 3 N -0.083 5.083 4 C -0.180 4.180 5 C -0.175 4.175 6 C -0.084 4.084 7 C 0.303 3.697 8 O -0.454 6.454 9 N -0.349 5.349 10 C -0.046 4.046 11 C -0.042 4.042 12 O -0.283 6.283 13 C 0.049 3.951 14 C -0.020 4.020 15 N -0.380 5.380 16 C -0.416 4.416 17 H 0.067 0.933 18 C -0.276 4.276 19 N -0.614 5.614 20 Si 0.933 3.067 21 H -0.229 1.229 22 H -0.183 1.183 23 H -0.198 1.198 24 C -0.023 4.023 25 C -0.013 4.013 26 N -0.159 5.159 27 N -0.108 5.108 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.120 0.880 32 H 0.163 0.837 33 H 0.255 0.745 34 H 0.173 0.827 35 H 0.155 0.845 36 H 0.114 0.886 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.092 0.908 45 H 0.110 0.890 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -31.025 -8.263 8.998 33.344 hybrid contribution 0.899 -2.319 1.176 2.751 sum -30.126 -10.582 10.175 33.512 Atomic orbital electron populations 1.22047 0.92442 1.04907 1.02615 1.22561 0.97211 0.74615 1.07441 1.47872 1.30009 1.12854 1.17587 1.24059 0.99099 0.94426 1.00416 1.21773 1.02960 0.95969 0.96765 1.20072 0.94437 0.97544 0.96336 1.21155 0.81062 0.78166 0.89311 1.90744 1.71330 1.61130 1.22190 1.48278 1.34598 1.40321 1.11689 1.22734 0.98008 1.03151 0.80711 1.23341 0.88657 0.97914 0.94319 1.87943 1.64862 1.57251 1.18288 1.22472 0.92881 0.94740 0.84997 1.22959 0.85431 0.94996 0.98602 1.45900 1.00602 1.15034 1.76483 1.19953 0.80468 1.05055 1.36090 0.93316 1.27098 0.93402 1.06356 1.00776 1.71030 1.13660 1.29283 1.47434 0.83285 0.74119 0.72272 0.77036 1.22906 1.18349 1.19821 1.22877 0.88486 0.93831 0.97149 1.21805 0.86094 1.00324 0.93124 1.75036 1.09412 1.17159 1.14269 1.78208 1.22581 0.93559 1.16441 0.87286 0.92054 0.93163 0.87979 0.83657 0.74450 0.82740 0.84499 0.88639 0.84145 0.84729 0.93118 0.93473 0.93576 0.94544 0.92297 0.90764 0.88974 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 10.04 71.98 0.72 -0.26 16 2 C 0.10 0.64 7.18 86.38 0.62 1.26 16 3 N -0.29 -4.79 3.44 -347.74 -1.20 -5.98 16 4 C -0.03 -0.37 11.49 83.49 0.96 0.58 16 5 C -0.03 -0.71 6.00 41.60 0.25 -0.46 16 6 C -0.04 -0.59 4.65 29.10 0.14 -0.46 16 7 C 0.51 12.62 7.71 87.66 0.68 13.29 16 8 O -0.58 -20.83 15.11 -3.02 -0.05 -20.87 16 9 N -0.61 -13.71 3.03 -818.07 -2.48 -16.19 16 10 C 0.08 1.01 6.50 86.33 0.56 1.57 16 11 C 0.03 0.68 6.90 72.06 0.50 1.17 16 12 O -0.36 -12.01 10.53 -148.98 -1.57 -13.58 16 13 C 0.09 3.18 1.27 -11.02 -0.01 3.17 16 14 C 0.11 4.38 7.91 83.31 0.66 5.03 16 15 N -0.65 -33.58 3.70 -739.91 -2.74 -36.32 16 16 C -0.29 -17.67 11.08 84.03 0.93 -16.73 16 17 H 0.05 3.21 8.05 -2.91 -0.02 3.19 16 18 C -0.08 -5.30 5.50 84.86 0.47 -4.83 16 19 N -0.97 -64.64 13.70 21.65 0.30 -64.34 16 20 Si 1.11 55.70 25.15 68.60 1.72 57.42 16 21 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 22 H -0.26 -11.66 6.18 99.48 0.61 -11.05 16 23 H -0.27 -12.73 6.53 99.48 0.65 -12.08 16 24 C 0.10 4.34 5.10 83.22 0.42 4.77 16 25 C 0.11 3.18 5.83 86.13 0.50 3.68 16 26 N -0.29 -8.75 11.84 -48.60 -0.58 -9.32 16 27 N -0.13 -3.45 12.91 37.02 0.48 -2.97 16 28 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.05 0.57 8.12 -2.39 -0.02 0.55 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.15 -0.25 8.07 -2.39 -0.02 -0.27 16 33 H 0.24 0.45 8.06 -2.91 -0.02 0.43 16 34 H 0.15 0.68 7.67 -2.38 -0.02 0.67 16 35 H 0.14 1.16 7.99 -2.39 -0.02 1.14 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.14 0.53 6.03 -2.39 -0.01 0.52 16 38 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.06 7.30 -2.39 -0.02 1.05 16 40 H 0.05 1.95 7.93 -2.39 -0.02 1.94 16 41 H 0.05 1.86 7.36 -2.38 -0.02 1.85 16 42 H 0.25 16.42 8.73 -92.71 -0.81 15.61 16 43 H 0.06 2.60 4.69 -2.39 -0.01 2.58 16 44 H 0.07 2.99 7.62 -2.39 -0.02 2.97 16 45 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 46 H 0.09 2.82 6.89 -2.39 -0.02 2.80 16 Total: -1.00 -98.93 369.74 2.10 -96.83 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: 0.81 Total: 3.55 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 7.39 Total: 11.77 kcal Atomic # 7 Polarization: -128.91 SS G_CDS: -6.21 Total: -135.12 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -1.61 Total: -34.45 kcal Atomic # 14 Polarization: 55.70 SS G_CDS: 1.72 Total: 57.42 kcal Total: -98.93 2.10 -96.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053353291.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.566 kcal (2) G-P(sol) polarization free energy of solvation -98.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds