Wall clock time and date at job start Tue Mar 31 2020 19:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.46916 * 2 1 4 4 N 1.28719 * 126.03467 * 84.99632 * 3 2 1 5 5 N 1.28520 * 110.63831 * 180.02562 * 4 3 2 6 6 C 1.33316 * 109.43754 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.81157 * 179.74043 * 6 5 4 8 8 C 1.37007 * 106.37355 * 0.02562 * 6 5 4 9 9 C 1.47239 * 127.18627 * 179.97438 * 8 6 5 10 10 O 1.21614 * 120.00196 * 279.08658 * 9 8 6 11 11 N 1.34777 * 119.99747 * 99.08807 * 9 8 6 12 12 C 1.46505 * 119.99916 * 185.16891 * 11 9 8 13 13 H 1.09005 * 110.45283 * 327.60465 * 12 11 9 14 14 C 1.54553 * 110.50244 * 90.34563 * 12 11 9 15 15 O 1.44634 * 105.02794 * 95.02072 * 14 12 11 16 16 C 1.43243 * 105.22715 * 39.02599 * 15 14 12 17 17 C 1.52885 * 115.84005 * 90.92079 * 16 15 14 18 18 N 1.47784 * 85.78146 * 94.51568 * 17 16 15 19 19 C 1.36942 * 134.40536 * 203.87611 * 18 17 16 20 20 H 1.07992 * 120.00347 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99341 * 359.97438 * 19 18 17 22 22 N 1.31622 * 120.00315 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99554 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47441 * 60.00093 * 23 21 19 25 25 H 1.48508 * 109.47100 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47323 * 299.99682 * 23 21 19 27 27 C 1.47786 * 91.19818 * 23.87449 * 18 17 16 28 28 C 1.53470 * 106.26039 * 321.05943 * 16 15 14 29 29 H 1.08997 * 109.47545 * 299.99411 * 1 2 3 30 30 H 1.09003 * 109.47385 * 59.99976 * 1 2 3 31 31 H 1.09004 * 109.47435 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47313 * 240.00089 * 2 1 3 33 33 H 1.08999 * 109.46967 * 119.99736 * 2 1 3 34 34 H 1.09002 * 109.47332 * 90.02487 * 7 6 5 35 35 H 1.09003 * 109.47160 * 210.02366 * 7 6 5 36 36 H 1.08996 * 109.47098 * 330.02281 * 7 6 5 37 37 H 0.96998 * 120.00398 * 5.17263 * 11 9 8 38 38 H 1.08996 * 110.32823 * 213.90475 * 14 12 11 39 39 H 1.08997 * 110.33247 * 336.13241 * 14 12 11 40 40 H 1.09002 * 113.82264 * 208.72530 * 17 16 15 41 41 H 1.08994 * 113.82242 * 340.29749 * 17 16 15 42 42 H 0.96994 * 119.99963 * 180.02562 * 22 21 19 43 43 H 1.08998 * 113.82251 * 221.91070 * 27 18 17 44 44 H 1.09000 * 113.93508 * 90.35140 * 27 18 17 45 45 H 1.08994 * 110.57791 * 264.16048 * 28 16 15 46 46 H 1.09000 * 110.70137 * 141.33193 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.1850 2.1254 1.0369 5 7 2.6255 3.2839 0.6970 6 6 2.7664 3.3337 -0.6278 7 6 3.2502 4.5067 -1.4409 8 6 2.3778 2.1092 -1.1039 9 6 2.3518 1.6678 -2.5083 10 8 1.4212 1.9793 -3.2265 11 7 3.3594 0.9183 -2.9978 12 6 3.3916 0.5742 -4.4215 13 1 2.3789 0.4674 -4.8105 14 6 4.1715 1.6436 -5.2195 15 8 5.5197 1.1291 -5.3176 16 6 5.3702 -0.2793 -5.5317 17 6 5.3033 -0.7280 -6.9917 18 7 6.7583 -0.9584 -6.8737 19 6 7.7959 -1.0093 -7.7661 20 1 8.7999 -1.1989 -7.4165 21 6 7.5568 -0.8172 -9.1199 22 7 6.3330 -0.5867 -9.5460 23 14 8.9719 -0.8875 -10.3373 24 1 9.6147 -2.2246 -10.2726 25 1 8.4563 -0.6514 -11.7098 26 1 9.9698 0.1584 -9.9973 27 6 6.6466 -1.1117 -5.4081 28 6 4.1989 -0.7266 -4.6467 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 4.3337 4.4529 -1.5472 35 1 2.7867 4.4810 -2.4271 36 1 2.9802 5.4345 -0.9366 37 1 4.0633 0.6068 -2.4076 38 1 3.7392 1.7649 -6.2127 39 1 4.1666 2.5934 -4.6848 40 1 4.7246 -1.6387 -7.1463 41 1 5.0386 0.0696 -7.6857 42 1 6.1660 -0.4528 -10.4920 43 1 7.4427 -0.6169 -4.8517 44 1 6.4735 -2.1375 -5.0827 45 1 4.5639 -1.1199 -3.6980 46 1 3.5903 -1.4710 -5.1602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053827945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:01 Heat of formation + Delta-G solvation = 82.919362 kcal Electronic energy + Delta-G solvation = -29429.655378 eV Core-core repulsion = 25359.090048 eV Total energy + Delta-G solvation = -4070.565330 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.59784 -40.48498 -39.25111 -36.28069 -36.07662 -34.55074 -33.03272 -32.13470 -31.46047 -30.48410 -28.43466 -27.85534 -25.97194 -25.27394 -24.97617 -23.96608 -22.15286 -21.53039 -21.14739 -20.72048 -19.10077 -18.46165 -17.07993 -16.89101 -16.77234 -16.47586 -15.53323 -15.36328 -15.19232 -15.04175 -14.74334 -14.23478 -14.06071 -14.02049 -13.71508 -13.50921 -13.10637 -13.07632 -12.90342 -12.81380 -12.58933 -12.23590 -12.04328 -12.01757 -11.70674 -11.60499 -11.38755 -11.22466 -11.14701 -10.87276 -10.71621 -10.50607 -10.43769 -10.30355 -9.84655 -9.61316 -9.49547 -9.45463 -8.90083 -8.82471 -6.91963 -5.77988 -3.10109 0.92298 1.54026 2.10701 2.15874 2.75910 3.39515 3.43538 3.44687 3.83758 4.04517 4.13967 4.25161 4.28158 4.43845 4.50645 4.52898 4.60056 4.87397 4.91475 4.99496 5.04508 5.16291 5.20445 5.20666 5.36415 5.37986 5.44283 5.50457 5.52659 5.59531 5.65769 5.81963 5.87521 5.91441 5.92230 6.05807 6.19689 6.26460 6.40441 6.51623 6.85779 7.03090 7.14855 7.43062 7.59743 7.66721 7.95801 8.08363 9.02443 9.69078 10.54609 11.39304 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.002468 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.613757 B =11342.975677 C =11697.825069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.106 3.894 3 N -0.269 5.269 4 N -0.063 5.063 5 N -0.268 5.268 6 C 0.034 3.966 7 C -0.076 4.076 8 C -0.066 4.066 9 C 0.596 3.404 10 O -0.512 6.512 11 N -0.701 5.701 12 C 0.109 3.891 13 H 0.109 0.891 14 C 0.038 3.962 15 O -0.335 6.335 16 C 0.055 3.945 17 C 0.152 3.848 18 N -0.604 5.604 19 C -0.222 4.222 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.922 5.922 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.130 3.870 28 C -0.145 4.145 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.405 0.595 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.254 0.746 43 H 0.052 0.948 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.530 1.214 18.793 22.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.014 4.014 3 N -0.067 5.067 4 N -0.042 5.042 5 N -0.133 5.133 6 C -0.106 4.106 7 C -0.135 4.135 8 C -0.200 4.200 9 C 0.378 3.622 10 O -0.385 6.385 11 N -0.353 5.353 12 C 0.005 3.995 13 H 0.127 0.873 14 C -0.041 4.041 15 O -0.253 6.253 16 C 0.014 3.986 17 C 0.027 3.973 18 N -0.330 5.330 19 C -0.350 4.350 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.569 5.569 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.004 3.996 28 C -0.184 4.184 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.132 0.868 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.240 0.760 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.969 1.624 19.455 22.899 hybrid contribution 0.875 -0.641 -1.498 1.850 sum -11.094 0.983 17.956 21.130 Atomic orbital electron populations 1.22178 0.92376 1.04292 1.04101 1.22258 0.97071 0.75954 1.06115 1.47863 1.41709 1.13370 1.03744 1.78175 1.16348 0.98054 1.11582 1.74856 1.15707 1.10926 1.11846 1.22177 1.02321 0.94948 0.91134 1.20230 1.01842 0.93297 0.98115 1.21872 1.12937 0.95136 0.90105 1.16802 0.82681 0.78586 0.84168 1.90879 1.34078 1.54678 1.58869 1.46160 1.26171 1.52146 1.10811 1.22632 1.01834 0.95551 0.79505 0.87329 1.23819 0.83894 0.96735 0.99618 1.89035 1.23726 1.19924 1.92607 1.23813 0.94808 0.82415 0.97601 1.22608 0.85824 0.98127 0.90787 1.45817 1.03397 1.83222 1.00568 1.18946 0.86814 1.42307 0.86912 0.90239 1.24766 0.96727 1.02166 0.96661 1.69790 1.18357 1.54579 1.14176 0.86190 0.81213 0.77865 0.80419 1.21202 1.21542 1.21044 1.22496 0.93458 0.95352 0.88315 1.23086 0.97633 0.96341 1.01353 0.90968 0.91185 0.89291 0.87755 0.86822 0.89758 0.90182 0.89727 0.75995 0.90815 0.89368 0.94663 0.90309 0.93585 0.92985 0.93570 0.90273 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.15 0.38 -0.56 16 2 C 0.11 0.63 6.99 -4.05 -0.03 0.60 16 3 N -0.27 -2.64 3.39 -57.38 -0.19 -2.84 16 4 N -0.06 -0.75 13.14 60.35 0.79 0.04 16 5 N -0.27 -3.50 12.35 33.51 0.41 -3.09 16 6 C 0.03 0.40 7.30 -82.39 -0.60 -0.20 16 7 C -0.08 -0.70 10.28 36.01 0.37 -0.33 16 8 C -0.07 -0.73 6.74 -82.33 -0.55 -1.29 16 9 C 0.60 6.71 6.83 -12.60 -0.09 6.63 16 10 O -0.51 -7.35 16.73 5.27 0.09 -7.26 16 11 N -0.70 -6.88 5.08 -53.26 -0.27 -7.15 16 12 C 0.11 1.27 3.53 -66.20 -0.23 1.03 16 13 H 0.11 1.27 7.49 -51.93 -0.39 0.88 16 14 C 0.04 0.54 7.37 37.97 0.28 0.82 16 15 O -0.33 -6.16 11.44 -35.23 -0.40 -6.57 16 16 C 0.05 0.96 1.28 -90.66 -0.12 0.85 16 17 C 0.15 3.42 6.99 -3.40 -0.02 3.39 16 18 N -0.60 -15.27 3.71 -183.61 -0.68 -15.95 16 19 C -0.22 -6.23 10.70 -15.05 -0.16 -6.39 16 20 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -27.12 11.40 55.49 0.63 -26.49 16 23 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.13 2.53 8.47 -3.40 -0.03 2.50 16 28 C -0.14 -1.76 6.24 -25.57 -0.16 -1.92 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 0.48 7.75 -51.93 -0.40 0.08 16 33 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.73 8.02 -51.93 -0.42 0.32 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.40 3.33 8.38 -40.82 -0.34 2.99 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.16 8.06 -51.93 -0.42 0.74 16 40 H 0.04 0.78 7.96 -51.93 -0.41 0.37 16 41 H 0.08 2.01 7.20 -51.93 -0.37 1.64 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.79 7.69 -51.93 -0.40 0.39 16 46 H 0.09 1.06 7.84 -51.93 -0.41 0.65 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -35.30 386.36 -6.79 -42.10 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.91 Total: -0.54 kcal Atomic # 6 Polarization: 5.90 SS G_CDS: -1.06 Total: 4.84 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.69 Total: -55.47 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.31 Total: -13.83 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.30 -6.79 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053827945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.018 kcal (2) G-P(sol) polarization free energy of solvation -35.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds