Wall clock time and date at job start Tue Mar 31 2020 19:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46497 * 109.46916 * 2 1 4 4 N 1.28719 * 126.03467 * 84.99632 * 3 2 1 5 5 N 1.28520 * 110.63831 * 180.02562 * 4 3 2 6 6 C 1.33316 * 109.43754 * 359.97438 * 5 4 3 7 7 C 1.50699 * 126.81157 * 179.74043 * 6 5 4 8 8 C 1.37007 * 106.37355 * 0.02562 * 6 5 4 9 9 C 1.47239 * 127.18627 * 179.97438 * 8 6 5 10 10 O 1.21614 * 120.00196 * 279.08658 * 9 8 6 11 11 N 1.34777 * 119.99747 * 99.08807 * 9 8 6 12 12 C 1.46505 * 119.99916 * 185.16891 * 11 9 8 13 13 H 1.09005 * 110.45283 * 327.60465 * 12 11 9 14 14 C 1.54553 * 110.50244 * 90.34563 * 12 11 9 15 15 O 1.44634 * 105.02794 * 95.02072 * 14 12 11 16 16 C 1.43243 * 105.22715 * 39.02599 * 15 14 12 17 17 C 1.52885 * 115.84005 * 90.92079 * 16 15 14 18 18 N 1.47784 * 85.78146 * 94.51568 * 17 16 15 19 19 C 1.36942 * 134.40536 * 203.87611 * 18 17 16 20 20 H 1.07992 * 120.00347 * 179.97438 * 19 18 17 21 21 C 1.38818 * 119.99341 * 359.97438 * 19 18 17 22 22 N 1.31622 * 120.00315 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99554 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47441 * 60.00093 * 23 21 19 25 25 H 1.48508 * 109.47100 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47323 * 299.99682 * 23 21 19 27 27 C 1.47786 * 91.19818 * 23.87449 * 18 17 16 28 28 C 1.53470 * 106.26039 * 321.05943 * 16 15 14 29 29 H 1.08997 * 109.47545 * 299.99411 * 1 2 3 30 30 H 1.09003 * 109.47385 * 59.99976 * 1 2 3 31 31 H 1.09004 * 109.47435 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47313 * 240.00089 * 2 1 3 33 33 H 1.08999 * 109.46967 * 119.99736 * 2 1 3 34 34 H 1.09002 * 109.47332 * 90.02487 * 7 6 5 35 35 H 1.09003 * 109.47160 * 210.02366 * 7 6 5 36 36 H 1.08996 * 109.47098 * 330.02281 * 7 6 5 37 37 H 0.96998 * 120.00398 * 5.17263 * 11 9 8 38 38 H 1.08996 * 110.32823 * 213.90475 * 14 12 11 39 39 H 1.08997 * 110.33247 * 336.13241 * 14 12 11 40 40 H 1.09002 * 113.82264 * 208.72530 * 17 16 15 41 41 H 1.08994 * 113.82242 * 340.29749 * 17 16 15 42 42 H 0.96994 * 119.99963 * 180.02562 * 22 21 19 43 43 H 1.08998 * 113.82251 * 221.91070 * 27 18 17 44 44 H 1.09000 * 113.93508 * 90.35140 * 27 18 17 45 45 H 1.08994 * 110.57791 * 264.16048 * 28 16 15 46 46 H 1.09000 * 110.70137 * 141.33193 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.1850 2.1254 1.0369 5 7 2.6255 3.2839 0.6970 6 6 2.7664 3.3337 -0.6278 7 6 3.2502 4.5067 -1.4409 8 6 2.3778 2.1092 -1.1039 9 6 2.3518 1.6678 -2.5083 10 8 1.4212 1.9793 -3.2265 11 7 3.3594 0.9183 -2.9978 12 6 3.3916 0.5742 -4.4215 13 1 2.3789 0.4674 -4.8105 14 6 4.1715 1.6436 -5.2195 15 8 5.5197 1.1291 -5.3176 16 6 5.3702 -0.2793 -5.5317 17 6 5.3033 -0.7280 -6.9917 18 7 6.7583 -0.9584 -6.8737 19 6 7.7959 -1.0093 -7.7661 20 1 8.7999 -1.1989 -7.4165 21 6 7.5568 -0.8172 -9.1199 22 7 6.3330 -0.5867 -9.5460 23 14 8.9719 -0.8875 -10.3373 24 1 9.6147 -2.2246 -10.2726 25 1 8.4563 -0.6514 -11.7098 26 1 9.9698 0.1584 -9.9973 27 6 6.6466 -1.1117 -5.4081 28 6 4.1989 -0.7266 -4.6467 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 4.3337 4.4529 -1.5472 35 1 2.7867 4.4810 -2.4271 36 1 2.9802 5.4345 -0.9366 37 1 4.0633 0.6068 -2.4076 38 1 3.7392 1.7649 -6.2127 39 1 4.1666 2.5934 -4.6848 40 1 4.7246 -1.6387 -7.1463 41 1 5.0386 0.0696 -7.6857 42 1 6.1660 -0.4528 -10.4920 43 1 7.4427 -0.6169 -4.8517 44 1 6.4735 -2.1375 -5.0827 45 1 4.5639 -1.1199 -3.6980 46 1 3.5903 -1.4710 -5.1602 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053827945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:00 Heat of formation + Delta-G solvation = 56.097298 kcal Electronic energy + Delta-G solvation = -29430.818470 eV Core-core repulsion = 25359.090048 eV Total energy + Delta-G solvation = -4071.728422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.41760 -41.68085 -40.41352 -37.76466 -36.73263 -35.66817 -34.12109 -33.84935 -32.20929 -31.51474 -29.87287 -28.80275 -27.57081 -26.63194 -25.94443 -24.82258 -23.78654 -22.33444 -22.17090 -21.60856 -20.56392 -19.29133 -18.70916 -17.99818 -17.65878 -17.40729 -17.03698 -16.73589 -16.30130 -16.13824 -15.85991 -15.41576 -15.20357 -15.08840 -14.72445 -14.55547 -14.46891 -14.37485 -13.72645 -13.53393 -13.34531 -13.21059 -13.13466 -13.03134 -12.95847 -12.83938 -12.70700 -12.58494 -12.55821 -12.32784 -12.10327 -11.96272 -11.66529 -11.39612 -11.29700 -11.20087 -10.90659 -10.70530 -10.31315 -10.14302 -8.90384 -7.89174 -5.21257 0.10713 0.77266 1.23943 1.31833 1.44932 1.48467 1.54262 1.91919 2.47852 2.85933 3.12244 3.28319 3.36036 3.44380 3.51496 3.57849 3.70143 3.80188 3.82145 3.85072 4.07126 4.14975 4.23683 4.30168 4.55890 4.57538 4.61930 4.68692 4.70069 4.74944 4.75954 4.76597 4.88515 4.90556 4.94812 4.96201 5.08474 5.16924 5.19318 5.23828 5.34414 5.37446 5.53272 5.94696 6.11268 6.21240 6.81190 6.93286 7.23624 7.62227 8.56042 9.27448 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.002468 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.613757 B =11342.975677 C =11697.825069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.094 3.906 3 N -0.256 5.256 4 N -0.076 5.076 5 N -0.297 5.297 6 C 0.024 3.976 7 C -0.076 4.076 8 C -0.073 4.073 9 C 0.609 3.391 10 O -0.543 6.543 11 N -0.685 5.685 12 C 0.125 3.875 13 H 0.114 0.886 14 C 0.032 3.968 15 O -0.363 6.363 16 C 0.074 3.926 17 C 0.146 3.854 18 N -0.641 5.641 19 C -0.234 4.234 20 H 0.082 0.918 21 C -0.068 4.068 22 N -0.953 5.953 23 Si 0.977 3.023 24 H -0.275 1.275 25 H -0.294 1.294 26 H -0.280 1.280 27 C 0.129 3.871 28 C -0.129 4.129 29 H 0.062 0.938 30 H 0.048 0.952 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.417 0.583 38 H 0.060 0.940 39 H 0.099 0.901 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.247 0.753 43 H 0.053 0.947 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.551 -0.160 20.617 23.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.025 4.025 3 N -0.055 5.055 4 N -0.055 5.055 5 N -0.161 5.161 6 C -0.116 4.116 7 C -0.134 4.134 8 C -0.207 4.207 9 C 0.391 3.609 10 O -0.418 6.418 11 N -0.337 5.337 12 C 0.020 3.980 13 H 0.132 0.868 14 C -0.046 4.046 15 O -0.282 6.282 16 C 0.033 3.967 17 C 0.020 3.980 18 N -0.368 5.368 19 C -0.362 4.362 20 H 0.100 0.900 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.805 3.195 24 H -0.201 1.201 25 H -0.221 1.221 26 H -0.206 1.206 27 C 0.005 3.995 28 C -0.168 4.168 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.255 0.745 38 H 0.079 0.921 39 H 0.118 0.882 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.097 0.903 45 H 0.133 0.867 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.974 0.225 21.352 24.481 hybrid contribution 0.865 -0.214 -2.012 2.201 sum -11.109 0.011 19.340 22.304 Atomic orbital electron populations 1.22163 0.92120 1.05629 1.02572 1.22740 0.97278 0.74210 1.08250 1.48205 1.40230 1.14228 1.02832 1.78101 1.16831 0.98251 1.12312 1.74828 1.16937 1.11706 1.12672 1.22581 1.02246 0.95825 0.90991 1.20303 1.02464 0.92979 0.97698 1.21815 1.13459 0.95298 0.90174 1.16695 0.82273 0.78002 0.83910 1.90877 1.35420 1.55922 1.59611 1.45953 1.26069 1.51500 1.10151 1.22374 1.01513 0.94198 0.79942 0.86779 1.23967 0.82630 0.98166 0.99817 1.89008 1.26192 1.20547 1.92470 1.23392 0.95944 0.82272 0.95052 1.22594 0.84757 0.97041 0.93577 1.46244 1.03919 1.83645 1.02971 1.19355 0.88028 1.40931 0.87898 0.90042 1.25593 0.99100 1.02904 0.98491 1.69986 1.20168 1.56271 1.13797 0.85180 0.78400 0.78189 0.77737 1.20087 1.22053 1.20578 1.22750 0.94429 0.97290 0.85032 1.22994 0.95345 0.96591 1.01821 0.91846 0.93280 0.86523 0.85942 0.84403 0.88650 0.90352 0.88976 0.74541 0.92133 0.88249 0.94474 0.94552 0.94374 0.92896 0.90338 0.86704 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.24 71.98 0.74 -0.74 16 2 C 0.09 0.82 6.99 86.38 0.60 1.43 16 3 N -0.26 -4.53 3.39 -335.44 -1.14 -5.67 16 4 N -0.08 -1.74 13.14 37.02 0.49 -1.25 16 5 N -0.30 -7.54 12.35 -47.88 -0.59 -8.13 16 6 C 0.02 0.54 7.30 42.04 0.31 0.84 16 7 C -0.08 -1.32 10.28 71.24 0.73 -0.58 16 8 C -0.07 -1.47 6.74 40.41 0.27 -1.20 16 9 C 0.61 12.38 6.83 86.61 0.59 12.97 16 10 O -0.54 -14.76 16.73 -4.08 -0.07 -14.82 16 11 N -0.68 -11.25 5.08 -440.66 -2.24 -13.49 16 12 C 0.12 2.55 3.53 46.11 0.16 2.72 16 13 H 0.11 2.36 7.49 -2.38 -0.02 2.34 16 14 C 0.03 0.88 7.37 72.51 0.53 1.41 16 15 O -0.36 -13.06 11.44 -148.98 -1.70 -14.77 16 16 C 0.07 2.50 1.28 -10.66 -0.01 2.48 16 17 C 0.15 6.62 6.99 86.09 0.60 7.22 16 18 N -0.64 -32.47 3.71 -741.10 -2.75 -35.22 16 19 C -0.23 -13.22 10.70 84.03 0.90 -12.32 16 20 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 21 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 22 N -0.95 -57.80 11.40 21.65 0.25 -57.56 16 23 Si 0.98 46.13 29.55 68.60 2.03 48.15 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 27 C 0.13 4.80 8.47 86.09 0.73 5.53 16 28 C -0.13 -2.65 6.24 31.34 0.20 -2.46 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.12 0.38 8.14 -2.38 -0.02 0.36 16 32 H 0.12 0.66 7.75 -2.39 -0.02 0.64 16 33 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.37 8.02 -2.39 -0.02 1.35 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.42 5.15 8.38 -92.71 -0.78 4.38 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 39 H 0.10 2.49 8.06 -2.39 -0.02 2.47 16 40 H 0.04 1.65 7.96 -2.39 -0.02 1.63 16 41 H 0.04 1.94 7.20 -2.39 -0.02 1.92 16 42 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 43 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.11 1.64 7.69 -2.39 -0.02 1.62 16 46 H 0.11 2.02 7.84 -2.39 -0.02 2.00 16 Total: -1.00 -79.53 386.36 1.32 -78.21 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.23 Total: 10.68 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: 6.82 Total: 13.85 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -5.98 Total: -121.31 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -1.77 Total: -29.59 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -79.53 1.32 -78.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053827945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.306 kcal (2) G-P(sol) polarization free energy of solvation -79.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds