Wall clock time and date at job start Tue Mar 31 2020 19:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47164 * 2 1 4 4 N 1.28717 * 126.03595 * 275.05563 * 3 2 1 5 5 N 1.28517 * 110.63710 * 179.97438 * 4 3 2 6 6 C 1.33313 * 109.44053 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.81572 * 180.02562 * 6 5 4 8 8 C 1.37012 * 106.37469 * 0.02562 * 6 5 4 9 9 C 1.47229 * 127.18763 * 179.97438 * 8 6 5 10 10 O 1.21615 * 120.00548 * 80.47726 * 9 8 6 11 11 N 1.34782 * 119.99814 * 260.47165 * 9 8 6 12 12 C 1.46496 * 119.99900 * 185.14892 * 11 9 8 13 13 H 1.08999 * 110.73827 * 34.30078 * 12 11 9 14 14 C 1.54461 * 110.82768 * 270.88078 * 12 11 9 15 15 O 1.43524 * 107.58115 * 220.41707 * 14 12 11 16 16 C 1.42542 * 109.63330 * 359.35907 * 15 14 12 17 17 C 1.52946 * 116.16496 * 253.33631 * 16 15 14 18 18 N 1.47761 * 85.80822 * 218.94844 * 17 16 15 19 19 C 1.36943 * 134.41125 * 203.94483 * 18 17 16 20 20 H 1.07998 * 119.99834 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99875 * 359.96475 * 19 18 17 22 22 N 1.31622 * 119.99817 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00229 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46749 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47073 * 119.99850 * 23 21 19 26 26 H 1.48501 * 109.46793 * 240.00067 * 23 21 19 27 27 C 1.47768 * 91.18354 * 23.91575 * 18 17 16 28 28 C 1.54270 * 106.60773 * 22.90265 * 16 15 14 29 29 H 1.08999 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46674 * 299.99748 * 1 2 3 31 31 H 1.09003 * 109.47356 * 59.99823 * 1 2 3 32 32 H 1.08999 * 109.46631 * 239.99932 * 2 1 3 33 33 H 1.08995 * 109.47018 * 120.00018 * 2 1 3 34 34 H 1.08993 * 109.47494 * 89.97576 * 7 6 5 35 35 H 1.09000 * 109.47207 * 209.98390 * 7 6 5 36 36 H 1.09002 * 109.46791 * 329.97535 * 7 6 5 37 37 H 0.97006 * 119.99706 * 5.14381 * 11 9 8 38 38 H 1.09005 * 109.83361 * 339.92551 * 14 12 11 39 39 H 1.09002 * 109.83526 * 100.80960 * 14 12 11 40 40 H 1.09004 * 113.81578 * 333.17312 * 17 16 15 41 41 H 1.09004 * 113.82008 * 104.71858 * 17 16 15 42 42 H 0.96998 * 119.99881 * 179.97438 * 22 21 19 43 43 H 1.08996 * 113.82160 * 221.85601 * 27 18 17 44 44 H 1.09010 * 113.92783 * 90.31670 * 27 18 17 45 45 H 1.08999 * 111.32911 * 207.20282 * 28 16 15 46 46 H 1.08999 * 111.09269 * 82.87985 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.1843 2.1256 -1.0368 5 7 2.6251 3.2840 -0.6968 6 6 2.7661 3.3338 0.6279 7 6 3.2549 4.5050 1.4406 8 6 2.3783 2.1090 1.1039 9 6 2.3537 1.6671 2.5081 10 8 1.4276 1.9847 3.2295 11 7 3.3575 0.9103 2.9941 12 6 3.2792 0.3765 4.3561 13 1 2.2492 0.1326 4.6164 14 6 3.8812 1.3725 5.3718 15 8 4.6324 0.6132 6.3304 16 6 4.5447 -0.7746 6.0170 17 6 3.6602 -1.6189 6.9357 18 7 4.6986 -2.6611 6.7979 19 6 4.7106 -4.0246 6.9240 20 1 5.6274 -4.5734 6.7668 21 6 3.5444 -4.7013 7.2542 22 7 2.4273 -4.0323 7.4465 23 14 3.5608 -6.5613 7.4271 24 1 4.9303 -7.0708 7.1625 25 1 3.1510 -6.9340 8.8048 26 1 2.6141 -7.1574 6.4506 27 6 5.7190 -1.6441 6.4687 28 6 4.1991 -0.8667 4.5163 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.4075 5.1281 1.7261 35 1 3.7566 4.1409 2.3372 36 1 3.9544 5.0929 0.8463 37 1 4.1319 0.7191 2.4419 38 1 4.5391 2.0730 4.8574 39 1 3.0816 1.9171 5.8740 40 1 3.5680 -1.2203 7.9460 41 1 2.7014 -1.8917 6.4948 42 1 1.6124 -4.5052 7.6768 43 1 6.3871 -1.9369 5.6589 44 1 6.2486 -1.2520 7.3371 45 1 3.6603 -1.7866 4.2893 46 1 5.0944 -0.7755 3.9013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053827946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:05 Heat of formation + Delta-G solvation = 79.626961 kcal Electronic energy + Delta-G solvation = -29520.002889 eV Core-core repulsion = 25449.294790 eV Total energy + Delta-G solvation = -4070.708099 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.58688 -40.43159 -39.26203 -36.39140 -36.02845 -34.77753 -33.04762 -32.16632 -31.40628 -30.32760 -28.39056 -27.92119 -25.91202 -25.21330 -25.01750 -23.93159 -22.13397 -21.58614 -21.37524 -20.72601 -18.88007 -18.47042 -17.09919 -16.84593 -16.80686 -16.46862 -15.57693 -15.29740 -15.24754 -14.95378 -14.70477 -14.52505 -14.04121 -13.81245 -13.74179 -13.62646 -13.12350 -12.99210 -12.87455 -12.72082 -12.52702 -12.23046 -12.09503 -11.96140 -11.80287 -11.60281 -11.27100 -11.18710 -11.00375 -10.92527 -10.84889 -10.51628 -10.42616 -10.37264 -10.05916 -9.64876 -9.47804 -9.40376 -8.90190 -8.84533 -6.99902 -5.86361 -3.19684 0.93127 1.54791 2.10163 2.22645 2.71673 3.32239 3.38038 3.40679 3.87296 4.05125 4.13215 4.26166 4.35274 4.41245 4.49218 4.58949 4.63825 4.93904 4.98039 5.04191 5.10649 5.13645 5.19732 5.23028 5.27183 5.31730 5.43320 5.45812 5.57281 5.60737 5.70865 5.84453 5.87925 5.94935 6.07677 6.13929 6.19942 6.31154 6.49544 6.58923 6.92659 7.02183 7.12768 7.41684 7.59273 7.68159 7.87033 8.09432 8.94598 9.60494 10.47493 11.30654 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002916 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.514885 B = 9600.649783 C =10763.851263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 N -0.265 5.265 4 N -0.062 5.062 5 N -0.269 5.269 6 C 0.030 3.970 7 C -0.073 4.073 8 C -0.066 4.066 9 C 0.596 3.404 10 O -0.505 6.505 11 N -0.703 5.703 12 C 0.110 3.890 13 H 0.111 0.889 14 C 0.046 3.954 15 O -0.366 6.366 16 C 0.055 3.945 17 C 0.157 3.843 18 N -0.605 5.605 19 C -0.223 4.223 20 H 0.082 0.918 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.912 3.088 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.130 3.870 28 C -0.121 4.121 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.083 0.917 37 H 0.405 0.595 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.076 0.924 42 H 0.254 0.746 43 H 0.049 0.951 44 H 0.045 0.955 45 H 0.101 0.899 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.451 11.748 -14.442 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.015 4.015 3 N -0.063 5.063 4 N -0.041 5.041 5 N -0.134 5.134 6 C -0.110 4.110 7 C -0.131 4.131 8 C -0.200 4.200 9 C 0.377 3.623 10 O -0.377 6.377 11 N -0.356 5.356 12 C 0.006 3.994 13 H 0.129 0.871 14 C -0.032 4.032 15 O -0.284 6.284 16 C 0.015 3.985 17 C 0.031 3.969 18 N -0.333 5.333 19 C -0.350 4.350 20 H 0.100 0.900 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.003 3.997 28 C -0.159 4.159 29 H 0.109 0.891 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.240 0.760 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.119 0.881 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.398 11.768 -15.204 19.230 hybrid contribution 0.194 -1.416 0.893 1.685 sum -0.204 10.352 -14.311 17.663 Atomic orbital electron populations 1.22182 0.92278 1.04486 1.04008 1.22309 0.97171 0.75727 1.06328 1.47884 1.41385 1.13414 1.03644 1.78183 1.16316 0.97997 1.11587 1.74843 1.15800 1.10976 1.11819 1.22171 1.02684 0.94897 0.91210 1.20183 1.01865 0.93220 0.97851 1.21836 1.12971 0.95079 0.90146 1.16803 0.82784 0.78509 0.84169 1.90897 1.34796 1.53665 1.58337 1.45983 1.21881 1.51517 1.16210 1.22808 1.02599 0.93657 0.80334 0.87135 1.23446 0.95428 0.94038 0.90325 1.88330 1.71496 1.17857 1.50716 1.24247 1.00618 0.79992 0.93649 1.22558 0.94353 0.84448 0.95515 1.45738 1.05175 1.00635 1.81758 1.19019 0.95504 0.79198 1.41268 0.89994 1.24798 0.95629 0.98137 1.01728 1.69828 0.99453 1.33998 1.53272 0.86043 0.77406 0.84812 0.77466 1.20411 1.21653 1.21681 1.22548 0.92115 0.87539 0.97448 1.23033 0.98967 0.97593 0.96271 0.89122 0.91167 0.91024 0.86768 0.87512 0.89824 0.90517 0.89770 0.75975 0.91578 0.90813 0.94596 0.90597 0.93567 0.93276 0.93779 0.88068 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 37.16 0.38 -0.83 16 2 C 0.10 0.76 6.99 -4.04 -0.03 0.73 16 3 N -0.27 -2.78 3.39 -57.38 -0.19 -2.97 16 4 N -0.06 -0.76 13.14 60.35 0.79 0.03 16 5 N -0.27 -3.50 12.35 33.51 0.41 -3.09 16 6 C 0.03 0.35 7.30 -82.39 -0.60 -0.25 16 7 C -0.07 -0.61 10.28 36.01 0.37 -0.24 16 8 C -0.07 -0.74 6.74 -82.33 -0.55 -1.30 16 9 C 0.60 7.03 6.83 -12.61 -0.09 6.94 16 10 O -0.50 -7.70 16.85 5.26 0.09 -7.61 16 11 N -0.70 -7.13 5.12 -52.92 -0.27 -7.40 16 12 C 0.11 1.42 3.29 -65.85 -0.22 1.20 16 13 H 0.11 1.61 7.70 -51.93 -0.40 1.21 16 14 C 0.05 0.63 7.58 37.92 0.29 0.92 16 15 O -0.37 -6.29 11.17 -35.23 -0.39 -6.69 16 16 C 0.06 1.00 1.48 -90.17 -0.13 0.87 16 17 C 0.16 3.58 6.98 -3.38 -0.02 3.56 16 18 N -0.60 -14.79 3.69 -183.21 -0.68 -15.46 16 19 C -0.22 -5.96 10.70 -15.06 -0.16 -6.12 16 20 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.17 11.40 55.49 0.63 -25.54 16 23 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.13 2.57 8.49 -3.38 -0.03 2.54 16 28 C -0.12 -1.73 6.05 -24.75 -0.15 -1.88 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.11 0.70 7.75 -51.93 -0.40 0.30 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.58 8.02 -51.93 -0.42 0.16 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.40 3.20 8.51 -40.82 -0.35 2.85 16 38 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 1.86 7.16 -51.93 -0.37 1.49 16 42 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.05 0.89 8.11 -51.93 -0.42 0.46 16 44 H 0.04 0.88 8.14 -51.92 -0.42 0.46 16 45 H 0.10 1.63 8.05 -51.93 -0.42 1.21 16 46 H 0.08 0.94 7.98 -51.93 -0.41 0.53 16 LS Contribution 387.15 15.07 5.83 5.83 Total: -1.00 -33.23 387.15 -6.80 -40.03 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.96 Total: 0.71 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -1.04 Total: 5.87 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.70 Total: -54.43 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.30 Total: -14.30 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.23 -6.80 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053827946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.656 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds