Wall clock time and date at job start Tue Mar 31 2020 19:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46493 * 109.47164 * 2 1 4 4 N 1.28717 * 126.03595 * 275.05563 * 3 2 1 5 5 N 1.28517 * 110.63710 * 179.97438 * 4 3 2 6 6 C 1.33313 * 109.44053 * 359.97438 * 5 4 3 7 7 C 1.50703 * 126.81572 * 180.02562 * 6 5 4 8 8 C 1.37012 * 106.37469 * 0.02562 * 6 5 4 9 9 C 1.47229 * 127.18763 * 179.97438 * 8 6 5 10 10 O 1.21615 * 120.00548 * 80.47726 * 9 8 6 11 11 N 1.34782 * 119.99814 * 260.47165 * 9 8 6 12 12 C 1.46496 * 119.99900 * 185.14892 * 11 9 8 13 13 H 1.08999 * 110.73827 * 34.30078 * 12 11 9 14 14 C 1.54461 * 110.82768 * 270.88078 * 12 11 9 15 15 O 1.43524 * 107.58115 * 220.41707 * 14 12 11 16 16 C 1.42542 * 109.63330 * 359.35907 * 15 14 12 17 17 C 1.52946 * 116.16496 * 253.33631 * 16 15 14 18 18 N 1.47761 * 85.80822 * 218.94844 * 17 16 15 19 19 C 1.36943 * 134.41125 * 203.94483 * 18 17 16 20 20 H 1.07998 * 119.99834 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99875 * 359.96475 * 19 18 17 22 22 N 1.31622 * 119.99817 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00229 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46749 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47073 * 119.99850 * 23 21 19 26 26 H 1.48501 * 109.46793 * 240.00067 * 23 21 19 27 27 C 1.47768 * 91.18354 * 23.91575 * 18 17 16 28 28 C 1.54270 * 106.60773 * 22.90265 * 16 15 14 29 29 H 1.08999 * 109.47392 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46674 * 299.99748 * 1 2 3 31 31 H 1.09003 * 109.47356 * 59.99823 * 1 2 3 32 32 H 1.08999 * 109.46631 * 239.99932 * 2 1 3 33 33 H 1.08995 * 109.47018 * 120.00018 * 2 1 3 34 34 H 1.08993 * 109.47494 * 89.97576 * 7 6 5 35 35 H 1.09000 * 109.47207 * 209.98390 * 7 6 5 36 36 H 1.09002 * 109.46791 * 329.97535 * 7 6 5 37 37 H 0.97006 * 119.99706 * 5.14381 * 11 9 8 38 38 H 1.09005 * 109.83361 * 339.92551 * 14 12 11 39 39 H 1.09002 * 109.83526 * 100.80960 * 14 12 11 40 40 H 1.09004 * 113.81578 * 333.17312 * 17 16 15 41 41 H 1.09004 * 113.82008 * 104.71858 * 17 16 15 42 42 H 0.96998 * 119.99881 * 179.97438 * 22 21 19 43 43 H 1.08996 * 113.82160 * 221.85601 * 27 18 17 44 44 H 1.09010 * 113.92783 * 90.31670 * 27 18 17 45 45 H 1.08999 * 111.32911 * 207.20282 * 28 16 15 46 46 H 1.08999 * 111.09269 * 82.87985 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 7 2.1843 2.1256 -1.0368 5 7 2.6251 3.2840 -0.6968 6 6 2.7661 3.3338 0.6279 7 6 3.2549 4.5050 1.4406 8 6 2.3783 2.1090 1.1039 9 6 2.3537 1.6671 2.5081 10 8 1.4276 1.9847 3.2295 11 7 3.3575 0.9103 2.9941 12 6 3.2792 0.3765 4.3561 13 1 2.2492 0.1326 4.6164 14 6 3.8812 1.3725 5.3718 15 8 4.6324 0.6132 6.3304 16 6 4.5447 -0.7746 6.0170 17 6 3.6602 -1.6189 6.9357 18 7 4.6986 -2.6611 6.7979 19 6 4.7106 -4.0246 6.9240 20 1 5.6274 -4.5734 6.7668 21 6 3.5444 -4.7013 7.2542 22 7 2.4273 -4.0323 7.4465 23 14 3.5608 -6.5613 7.4271 24 1 4.9303 -7.0708 7.1625 25 1 3.1510 -6.9340 8.8048 26 1 2.6141 -7.1574 6.4506 27 6 5.7190 -1.6441 6.4687 28 6 4.1991 -0.8667 4.5163 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.4075 5.1281 1.7261 35 1 3.7566 4.1409 2.3372 36 1 3.9544 5.0929 0.8463 37 1 4.1319 0.7191 2.4419 38 1 4.5391 2.0730 4.8574 39 1 3.0816 1.9171 5.8740 40 1 3.5680 -1.2203 7.9460 41 1 2.7014 -1.8917 6.4948 42 1 1.6124 -4.5052 7.6768 43 1 6.3871 -1.9369 5.6589 44 1 6.2486 -1.2520 7.3371 45 1 3.6603 -1.7866 4.2893 46 1 5.0944 -0.7755 3.9013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053827946.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:04 Heat of formation + Delta-G solvation = 55.163945 kcal Electronic energy + Delta-G solvation = -29521.063685 eV Core-core repulsion = 25449.294790 eV Total energy + Delta-G solvation = -4071.768895 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.43873 -41.68372 -40.47484 -37.92236 -36.75704 -35.91078 -34.12919 -33.87415 -32.20965 -31.41065 -29.91138 -28.82345 -27.49420 -26.72120 -25.97629 -24.79950 -23.89038 -22.55682 -22.24134 -21.69673 -20.38822 -19.36021 -18.75483 -18.01558 -17.70810 -17.46529 -17.10826 -16.55202 -16.53323 -16.08465 -15.95576 -15.57777 -15.41595 -14.90171 -14.71976 -14.43641 -14.41521 -14.24417 -13.75514 -13.68181 -13.52377 -13.40124 -13.17206 -13.04350 -12.92442 -12.86326 -12.70075 -12.61062 -12.59516 -12.39843 -12.03162 -11.94989 -11.76977 -11.52381 -11.49069 -11.22921 -10.88202 -10.44246 -10.32766 -10.31178 -8.96582 -7.91172 -5.25897 0.07718 0.70463 1.23150 1.33933 1.47324 1.48757 1.58630 1.78937 2.44006 2.82765 3.10790 3.18151 3.31794 3.37292 3.50688 3.57348 3.68776 3.74993 3.77608 3.81338 3.99770 4.03801 4.11205 4.21971 4.55912 4.57464 4.62416 4.69712 4.70643 4.74103 4.75601 4.78153 4.84814 4.91628 4.93223 5.01312 5.03419 5.13824 5.21104 5.21481 5.25915 5.32022 5.50343 5.87404 6.12822 6.18369 6.77501 6.89738 7.22287 7.58849 8.52159 9.25760 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015259 B = 0.002916 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.514885 B = 9600.649783 C =10763.851263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 N -0.256 5.256 4 N -0.075 5.075 5 N -0.295 5.295 6 C 0.028 3.972 7 C -0.074 4.074 8 C -0.075 4.075 9 C 0.609 3.391 10 O -0.541 6.541 11 N -0.683 5.683 12 C 0.125 3.875 13 H 0.091 0.909 14 C 0.043 3.957 15 O -0.378 6.378 16 C 0.078 3.922 17 C 0.150 3.850 18 N -0.629 5.629 19 C -0.230 4.230 20 H 0.090 0.910 21 C -0.064 4.064 22 N -0.952 5.952 23 Si 0.978 3.022 24 H -0.263 1.263 25 H -0.298 1.298 26 H -0.290 1.290 27 C 0.129 3.871 28 C -0.108 4.108 29 H 0.112 0.888 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.421 0.579 38 H 0.096 0.904 39 H 0.070 0.930 40 H 0.007 0.993 41 H 0.050 0.950 42 H 0.248 0.752 43 H 0.077 0.923 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 11.720 -16.063 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.055 5.055 4 N -0.054 5.054 5 N -0.159 5.159 6 C -0.112 4.112 7 C -0.132 4.132 8 C -0.209 4.209 9 C 0.391 3.609 10 O -0.416 6.416 11 N -0.337 5.337 12 C 0.020 3.980 13 H 0.109 0.891 14 C -0.035 4.035 15 O -0.295 6.295 16 C 0.037 3.963 17 C 0.024 3.976 18 N -0.357 5.357 19 C -0.358 4.358 20 H 0.107 0.893 21 C -0.257 4.257 22 N -0.601 5.601 23 Si 0.806 3.194 24 H -0.187 1.187 25 H -0.225 1.225 26 H -0.217 1.217 27 C 0.004 3.996 28 C -0.146 4.146 29 H 0.130 0.870 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.157 0.843 33 H 0.134 0.866 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.116 0.884 37 H 0.260 0.740 38 H 0.114 0.886 39 H 0.089 0.911 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.061 0.939 45 H 0.102 0.898 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.349 11.749 -16.866 20.599 hybrid contribution -0.332 -1.355 1.428 1.997 sum 1.018 10.394 -15.438 18.638 Atomic orbital electron populations 1.22162 0.92233 1.05487 1.02667 1.22673 0.97214 0.74464 1.08023 1.48151 1.40272 1.14076 1.03000 1.78126 1.16808 0.98271 1.12179 1.74825 1.16872 1.11494 1.12739 1.22659 1.02017 0.95625 0.90932 1.20321 1.02333 0.92514 0.98066 1.21747 1.13839 0.95436 0.89903 1.16746 0.82232 0.77905 0.84061 1.90895 1.36234 1.55186 1.59258 1.45702 1.22121 1.50617 1.15211 1.22436 1.01185 0.92963 0.81419 0.89134 1.23638 0.95805 0.94057 0.90011 1.88313 1.71799 1.17198 1.52232 1.23744 0.97611 0.80176 0.94779 1.22460 0.94124 0.85856 0.95147 1.46040 1.07210 1.00729 1.81737 1.19426 0.95663 0.80726 1.40013 0.89264 1.25615 0.95441 1.02375 1.02276 1.70021 0.99841 1.35406 1.54802 0.85018 0.77934 0.79791 0.76616 1.18710 1.22502 1.21662 1.22690 0.92261 0.86441 0.98189 1.22918 1.00463 0.97342 0.93888 0.86982 0.93422 0.91341 0.84274 0.86636 0.89513 0.89435 0.88429 0.74043 0.88613 0.91148 0.97529 0.93126 0.94271 0.90458 0.93889 0.89758 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 71.98 0.74 -1.45 16 2 C 0.10 1.20 6.99 86.38 0.60 1.81 16 3 N -0.26 -4.98 3.39 -335.44 -1.14 -6.11 16 4 N -0.07 -1.76 13.14 37.02 0.49 -1.28 16 5 N -0.30 -7.35 12.35 -47.88 -0.59 -7.94 16 6 C 0.03 0.60 7.30 42.05 0.31 0.91 16 7 C -0.07 -1.10 10.28 71.24 0.73 -0.37 16 8 C -0.07 -1.56 6.74 40.41 0.27 -1.29 16 9 C 0.61 13.35 6.83 86.61 0.59 13.94 16 10 O -0.54 -16.13 16.85 -4.08 -0.07 -16.20 16 11 N -0.68 -12.08 5.12 -439.60 -2.25 -14.33 16 12 C 0.13 2.99 3.29 46.34 0.15 3.15 16 13 H 0.09 2.61 7.70 -2.39 -0.02 2.60 16 14 C 0.04 1.07 7.58 72.48 0.55 1.62 16 15 O -0.38 -12.37 11.17 -148.98 -1.66 -14.04 16 16 C 0.08 2.73 1.48 -10.35 -0.02 2.72 16 17 C 0.15 7.07 6.98 86.12 0.60 7.67 16 18 N -0.63 -30.83 3.69 -739.69 -2.73 -33.56 16 19 C -0.23 -12.30 10.70 84.03 0.90 -11.40 16 20 H 0.09 4.51 7.83 -2.91 -0.02 4.49 16 21 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 22 N -0.95 -55.80 11.40 21.65 0.25 -55.56 16 23 Si 0.98 43.97 29.55 68.60 2.03 46.00 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 25 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 27 C 0.13 4.92 8.49 86.11 0.73 5.66 16 28 C -0.11 -2.86 6.05 31.88 0.19 -2.67 16 29 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.12 1.27 7.75 -2.39 -0.02 1.25 16 34 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.10 8.02 -2.39 -0.02 1.08 16 36 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.42 5.06 8.51 -92.70 -0.79 4.27 16 38 H 0.10 1.91 8.02 -2.38 -0.02 1.89 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 41 H 0.05 2.61 7.16 -2.39 -0.02 2.59 16 42 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 43 H 0.08 2.53 8.11 -2.39 -0.02 2.51 16 44 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.08 2.61 8.05 -2.39 -0.02 2.59 16 46 H 0.11 2.25 7.98 -2.39 -0.02 2.23 16 Total: -1.00 -73.69 387.15 1.36 -72.34 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.21 Total: 13.42 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 6.82 Total: 17.25 kcal Atomic # 7 Polarization: -112.80 SS G_CDS: -5.97 Total: -118.77 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.73 Total: -30.24 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -73.69 1.36 -72.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053827946.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.501 kcal (2) G-P(sol) polarization free energy of solvation -73.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds