Wall clock time and date at job start Tue Mar 31 2020 19:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47517 * 2 1 4 4 C 1.35309 * 125.86914 * 124.99650 * 3 2 1 5 5 C 1.35353 * 106.17535 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.75068 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47730 * 124.99556 * 6 5 4 8 8 O 1.21287 * 119.99446 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00733 * 179.97438 * 7 6 5 10 10 C 1.46491 * 120.00440 * 180.02562 * 9 7 6 11 11 H 1.09006 * 110.77215 * 31.46995 * 10 9 7 12 12 C 1.55062 * 111.05171 * 267.81233 * 10 9 7 13 13 O 1.44600 * 103.67103 * 205.24339 * 12 10 9 14 14 C 1.42831 * 106.73777 * 39.08920 * 13 12 10 15 15 C 1.52649 * 115.96711 * 202.47494 * 14 13 12 16 16 N 1.47222 * 87.78102 * 218.40676 * 15 14 13 17 17 C 1.36938 * 135.96802 * 206.37747 * 16 15 14 18 18 H 1.08001 * 119.99838 * 7.53411 * 17 16 15 19 19 C 1.38816 * 120.00205 * 187.53840 * 17 16 15 20 20 N 1.31617 * 120.00068 * 174.45687 * 19 17 16 21 21 Si 1.86799 * 119.99749 * 354.45491 * 19 17 16 22 22 H 1.48499 * 109.47025 * 174.97339 * 21 19 17 23 23 H 1.48499 * 109.47160 * 294.97425 * 21 19 17 24 24 H 1.48500 * 109.46957 * 54.97495 * 21 19 17 25 25 C 1.47213 * 88.06630 * 26.63598 * 16 15 14 26 26 C 1.53329 * 108.32789 * 334.30448 * 14 13 12 27 27 N 1.33765 * 106.49580 * 0.26172 * 5 4 3 28 28 N 1.28636 * 108.88586 * 359.56618 * 27 5 4 29 29 H 1.09002 * 109.47253 * 299.99383 * 1 2 3 30 30 H 1.09000 * 109.47292 * 59.99895 * 1 2 3 31 31 H 1.09002 * 109.47521 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47056 * 239.99951 * 2 1 3 33 33 H 1.08997 * 109.47240 * 120.00626 * 2 1 3 34 34 H 1.07999 * 126.91127 * 0.06474 * 4 3 2 35 35 H 1.09004 * 109.47455 * 4.99448 * 6 5 4 36 36 H 1.09001 * 109.46895 * 245.00010 * 6 5 4 37 37 H 0.97008 * 119.99834 * 0.02562 * 9 7 6 38 38 H 1.09003 * 110.58038 * 323.78980 * 12 10 9 39 39 H 1.09003 * 110.58371 * 86.69420 * 12 10 9 40 40 H 1.09000 * 113.50254 * 103.68099 * 15 14 13 41 41 H 1.08999 * 113.55829 * 333.14718 * 15 14 13 42 42 H 0.97004 * 120.00108 * 354.85548 * 20 19 17 43 43 H 1.09000 * 113.50445 * 88.09583 * 25 16 15 44 44 H 1.09004 * 113.50076 * 218.64167 * 25 16 15 45 45 H 1.08996 * 110.56372 * 120.19133 * 26 14 13 46 46 H 1.09002 * 110.56344 * 243.04468 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9190 0.8982 5 6 3.0534 3.2078 0.5249 6 6 3.9227 4.2324 1.2071 7 6 4.8936 4.8112 0.2105 8 8 4.8806 4.4295 -0.9407 9 7 5.7757 5.7536 0.5980 10 6 6.7191 6.3165 -0.3710 11 1 6.2823 6.3359 -1.3695 12 6 8.0559 5.5308 -0.3680 13 8 9.0206 6.4957 -0.8468 14 6 8.6731 7.7507 -0.2599 15 6 9.1772 8.9926 -0.9905 16 7 9.4283 9.5965 0.3284 17 6 9.4922 10.8680 0.8330 18 1 9.2143 11.7088 0.2148 19 6 9.9140 11.0760 2.1391 20 7 10.0800 12.3015 2.5897 21 14 10.2460 9.6168 3.2570 22 1 10.7971 10.0984 4.5491 23 1 8.9786 8.8826 3.5022 24 1 11.2262 8.7092 2.6083 25 6 9.5873 8.2353 0.8660 26 6 7.1738 7.7345 0.0605 27 7 2.3015 3.3945 -0.5656 28 7 1.7053 2.2918 -0.8541 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.3275 1.4201 1.7427 35 1 4.4746 3.7583 2.0187 36 1 3.2973 5.0291 1.6099 37 1 5.7859 6.0591 1.5186 38 1 8.3073 5.2062 0.6417 39 1 8.0002 4.6771 -1.0434 40 1 8.4033 9.5044 -1.5626 41 1 10.0845 8.8194 -1.5692 42 1 9.9803 13.0567 1.9892 43 1 10.6063 7.8552 0.7926 44 1 9.1594 8.1080 1.8604 45 1 7.0088 7.8812 1.1278 46 1 6.6506 8.4966 -0.5172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053879772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:12 Heat of formation + Delta-G solvation = 90.824743 kcal Electronic energy + Delta-G solvation = -28459.540321 eV Core-core repulsion = 24389.317794 eV Total energy + Delta-G solvation = -4070.222527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.52585 -40.49041 -39.35545 -36.70374 -35.90919 -34.57932 -33.03049 -32.35650 -31.24168 -30.58608 -28.70391 -27.90960 -25.74681 -25.51219 -25.09735 -22.72295 -22.02713 -21.51409 -21.11957 -20.41320 -19.15143 -17.86717 -17.48982 -17.32477 -16.63648 -16.53424 -15.79813 -15.56278 -15.36676 -15.10405 -15.00883 -14.86891 -14.33535 -13.88131 -13.63145 -13.51899 -13.29639 -13.16876 -12.95360 -12.89488 -12.73769 -12.45097 -12.20242 -11.77966 -11.73255 -11.63843 -11.42151 -11.12765 -10.99401 -10.85289 -10.52816 -10.33857 -10.31757 -10.01541 -9.92512 -9.43309 -9.18469 -9.11923 -8.96220 -8.79690 -7.20885 -6.32659 -3.26877 1.30132 1.97875 2.27006 2.53742 3.04591 3.34053 3.42527 3.61352 3.83896 4.04673 4.10256 4.22358 4.40665 4.48457 4.50415 4.56263 4.63135 4.77630 4.83575 4.88466 4.91936 4.92045 4.98319 5.03167 5.18611 5.20673 5.22550 5.42240 5.45837 5.58031 5.75810 5.77065 5.82090 6.00216 6.10744 6.15055 6.26896 6.27855 6.31085 6.33338 6.35966 6.58253 7.04563 7.30297 7.37361 8.13285 8.20900 8.30548 8.94450 9.45970 10.32009 11.17463 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.002099 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.914637 B =13337.249159 C =13708.624012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.112 3.888 3 N -0.294 5.294 4 C -0.046 4.046 5 C -0.007 4.007 6 C -0.054 4.054 7 C 0.516 3.484 8 O -0.520 6.520 9 N -0.720 5.720 10 C 0.112 3.888 11 H 0.107 0.893 12 C 0.039 3.961 13 O -0.356 6.356 14 C 0.060 3.940 15 C 0.132 3.868 16 N -0.620 5.620 17 C -0.301 4.301 18 H 0.085 0.915 19 C -0.024 4.024 20 N -0.933 5.933 21 Si 1.070 2.930 22 H -0.294 1.294 23 H -0.294 1.294 24 H -0.286 1.286 25 C 0.088 3.912 26 C -0.119 4.119 27 N -0.239 5.239 28 N -0.085 5.085 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.190 0.810 35 H 0.112 0.888 36 H 0.113 0.887 37 H 0.403 0.597 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.261 0.739 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.131 -27.436 0.457 32.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.009 4.009 3 N -0.088 5.088 4 C -0.197 4.197 5 C -0.145 4.145 6 C -0.096 4.096 7 C 0.301 3.699 8 O -0.394 6.394 9 N -0.374 5.374 10 C 0.006 3.994 11 H 0.125 0.875 12 C -0.039 4.039 13 O -0.273 6.273 14 C 0.018 3.982 15 C 0.005 3.995 16 N -0.350 5.350 17 C -0.427 4.427 18 H 0.103 0.897 19 C -0.223 4.223 20 N -0.575 5.575 21 Si 0.902 3.098 22 H -0.222 1.222 23 H -0.222 1.222 24 H -0.213 1.213 25 C -0.038 4.038 26 C -0.157 4.157 27 N -0.105 5.105 28 N -0.065 5.065 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.117 0.883 33 H 0.123 0.877 34 H 0.207 0.793 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.238 0.762 38 H 0.080 0.920 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.378 -27.621 -0.180 32.634 hybrid contribution 0.231 0.179 0.021 0.294 sum -17.147 -27.442 -0.159 32.359 Atomic orbital electron populations 1.22082 0.92624 1.03729 1.04131 1.22091 0.96981 0.76546 1.05264 1.47441 1.30701 1.12055 1.18600 1.23295 1.00833 0.95386 1.00218 1.21190 1.02476 0.93925 0.96948 1.19876 0.95450 0.97279 0.96977 1.20368 0.80867 0.79361 0.89312 1.90768 1.69948 1.59411 1.19321 1.45914 1.36124 1.41696 1.13661 1.22651 0.89501 0.92839 0.94389 0.87518 1.23889 0.87199 0.92850 0.99984 1.88802 1.51275 1.17971 1.69227 1.23582 0.93458 0.84475 0.96640 1.22383 0.98096 0.88718 0.90265 1.45742 1.84455 1.00477 1.04356 1.20135 1.43087 0.80490 0.98949 0.89740 1.25720 0.98088 1.02493 0.96019 1.70912 1.51002 0.97760 1.37786 0.83729 0.76014 0.74085 0.75951 1.22174 1.22243 1.21308 1.23207 0.97711 0.86571 0.96311 1.22633 0.94233 0.95530 1.03277 1.75133 1.07575 1.15663 1.12146 1.78312 1.20860 0.92740 1.14543 0.91712 0.90573 0.89864 0.88269 0.87676 0.79314 0.86989 0.86901 0.76188 0.92037 0.88953 0.92974 0.93457 0.92863 0.92933 0.92842 0.89566 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.04 37.15 0.37 -0.18 16 2 C 0.11 0.40 7.17 -4.05 -0.03 0.37 16 3 N -0.29 -2.46 3.44 -61.26 -0.21 -2.67 16 4 C -0.05 -0.35 11.49 -17.05 -0.20 -0.54 16 5 C -0.01 -0.07 6.00 -82.78 -0.50 -0.56 16 6 C -0.05 -0.42 6.28 -29.04 -0.18 -0.60 16 7 C 0.52 6.01 7.82 -10.99 -0.09 5.92 16 8 O -0.52 -8.51 15.25 5.55 0.08 -8.43 16 9 N -0.72 -7.57 5.20 -51.72 -0.27 -7.84 16 10 C 0.11 1.48 3.51 -65.77 -0.23 1.25 16 11 H 0.11 1.57 7.54 -51.93 -0.39 1.18 16 12 C 0.04 0.54 7.42 38.25 0.28 0.82 16 13 O -0.36 -6.13 11.32 -35.23 -0.40 -6.53 16 14 C 0.06 1.08 1.66 -90.68 -0.15 0.93 16 15 C 0.13 2.71 8.20 -8.04 -0.07 2.64 16 16 N -0.62 -15.24 3.65 -184.66 -0.67 -15.91 16 17 C -0.30 -8.59 11.08 -15.06 -0.17 -8.76 16 18 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 19 C -0.02 -0.72 5.50 -17.43 -0.10 -0.81 16 20 N -0.93 -29.17 13.70 55.49 0.76 -28.41 16 21 Si 1.07 26.35 25.17 -169.99 -4.28 22.07 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.29 -6.63 6.49 56.52 0.37 -6.26 16 24 H -0.29 -6.70 6.18 56.52 0.35 -6.36 16 25 C 0.09 1.88 5.20 -7.91 -0.04 1.84 16 26 C -0.12 -1.80 6.20 -25.49 -0.16 -1.96 16 27 N -0.24 -3.40 11.83 33.29 0.39 -3.01 16 28 N -0.09 -1.07 12.91 60.35 0.78 -0.29 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.08 0.09 8.14 -51.93 -0.42 -0.33 16 32 H 0.10 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.10 0.06 8.07 -51.93 -0.42 -0.36 16 34 H 0.19 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.11 0.44 8.12 -51.93 -0.42 0.02 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.40 3.16 8.41 -40.82 -0.34 2.81 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.05 1.01 7.91 -51.93 -0.41 0.60 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 43 H 0.05 1.16 7.62 -51.93 -0.40 0.76 16 44 H 0.05 1.13 4.57 -51.93 -0.24 0.90 16 45 H 0.09 1.28 7.45 -51.93 -0.39 0.90 16 46 H 0.09 1.39 7.82 -51.93 -0.41 0.98 16 LS Contribution 377.31 15.07 5.69 5.69 Total: -1.00 -39.24 377.31 -6.25 -45.49 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -6.88 Total: -0.53 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.24 Total: 0.36 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.78 Total: -58.12 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.31 Total: -14.95 kcal Atomic # 14 Polarization: 26.35 SS G_CDS: -4.28 Total: 22.07 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -39.24 -6.25 -45.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053879772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.315 kcal (2) G-P(sol) polarization free energy of solvation -39.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds