Wall clock time and date at job start Tue Mar 31 2020 19:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47517 * 2 1 4 4 C 1.35309 * 125.86914 * 124.99650 * 3 2 1 5 5 C 1.35353 * 106.17535 * 180.02562 * 4 3 2 6 6 C 1.50696 * 126.75068 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47730 * 124.99556 * 6 5 4 8 8 O 1.21287 * 119.99446 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00733 * 179.97438 * 7 6 5 10 10 C 1.46491 * 120.00440 * 180.02562 * 9 7 6 11 11 H 1.09006 * 110.77215 * 31.46995 * 10 9 7 12 12 C 1.55062 * 111.05171 * 267.81233 * 10 9 7 13 13 O 1.44600 * 103.67103 * 205.24339 * 12 10 9 14 14 C 1.42831 * 106.73777 * 39.08920 * 13 12 10 15 15 C 1.52649 * 115.96711 * 202.47494 * 14 13 12 16 16 N 1.47222 * 87.78102 * 218.40676 * 15 14 13 17 17 C 1.36938 * 135.96802 * 206.37747 * 16 15 14 18 18 H 1.08001 * 119.99838 * 7.53411 * 17 16 15 19 19 C 1.38816 * 120.00205 * 187.53840 * 17 16 15 20 20 N 1.31617 * 120.00068 * 174.45687 * 19 17 16 21 21 Si 1.86799 * 119.99749 * 354.45491 * 19 17 16 22 22 H 1.48499 * 109.47025 * 174.97339 * 21 19 17 23 23 H 1.48499 * 109.47160 * 294.97425 * 21 19 17 24 24 H 1.48500 * 109.46957 * 54.97495 * 21 19 17 25 25 C 1.47213 * 88.06630 * 26.63598 * 16 15 14 26 26 C 1.53329 * 108.32789 * 334.30448 * 14 13 12 27 27 N 1.33765 * 106.49580 * 0.26172 * 5 4 3 28 28 N 1.28636 * 108.88586 * 359.56618 * 27 5 4 29 29 H 1.09002 * 109.47253 * 299.99383 * 1 2 3 30 30 H 1.09000 * 109.47292 * 59.99895 * 1 2 3 31 31 H 1.09002 * 109.47521 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47056 * 239.99951 * 2 1 3 33 33 H 1.08997 * 109.47240 * 120.00626 * 2 1 3 34 34 H 1.07999 * 126.91127 * 0.06474 * 4 3 2 35 35 H 1.09004 * 109.47455 * 4.99448 * 6 5 4 36 36 H 1.09001 * 109.46895 * 245.00010 * 6 5 4 37 37 H 0.97008 * 119.99834 * 0.02562 * 9 7 6 38 38 H 1.09003 * 110.58038 * 323.78980 * 12 10 9 39 39 H 1.09003 * 110.58371 * 86.69420 * 12 10 9 40 40 H 1.09000 * 113.50254 * 103.68099 * 15 14 13 41 41 H 1.08999 * 113.55829 * 333.14718 * 15 14 13 42 42 H 0.97004 * 120.00108 * 354.85548 * 20 19 17 43 43 H 1.09000 * 113.50445 * 88.09583 * 25 16 15 44 44 H 1.09004 * 113.50076 * 218.64167 * 25 16 15 45 45 H 1.08996 * 110.56372 * 120.19133 * 26 14 13 46 46 H 1.09002 * 110.56344 * 243.04468 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8756 1.9190 0.8982 5 6 3.0534 3.2078 0.5249 6 6 3.9227 4.2324 1.2071 7 6 4.8936 4.8112 0.2105 8 8 4.8806 4.4295 -0.9407 9 7 5.7757 5.7536 0.5980 10 6 6.7191 6.3165 -0.3710 11 1 6.2823 6.3359 -1.3695 12 6 8.0559 5.5308 -0.3680 13 8 9.0206 6.4957 -0.8468 14 6 8.6731 7.7507 -0.2599 15 6 9.1772 8.9926 -0.9905 16 7 9.4283 9.5965 0.3284 17 6 9.4922 10.8680 0.8330 18 1 9.2143 11.7088 0.2148 19 6 9.9140 11.0760 2.1391 20 7 10.0800 12.3015 2.5897 21 14 10.2460 9.6168 3.2570 22 1 10.7971 10.0984 4.5491 23 1 8.9786 8.8826 3.5022 24 1 11.2262 8.7092 2.6083 25 6 9.5873 8.2353 0.8660 26 6 7.1738 7.7345 0.0605 27 7 2.3015 3.3945 -0.5656 28 7 1.7053 2.2918 -0.8541 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.3275 1.4201 1.7427 35 1 4.4746 3.7583 2.0187 36 1 3.2973 5.0291 1.6099 37 1 5.7859 6.0591 1.5186 38 1 8.3073 5.2062 0.6417 39 1 8.0002 4.6771 -1.0434 40 1 8.4033 9.5044 -1.5626 41 1 10.0845 8.8194 -1.5692 42 1 9.9803 13.0567 1.9892 43 1 10.6063 7.8552 0.7926 44 1 9.1594 8.1080 1.8604 45 1 7.0088 7.8812 1.1278 46 1 6.6506 8.4966 -0.5172 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053879772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:12 Heat of formation + Delta-G solvation = 58.455166 kcal Electronic energy + Delta-G solvation = -28460.943971 eV Core-core repulsion = 24389.317794 eV Total energy + Delta-G solvation = -4071.626177 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.16290 -41.80690 -40.43311 -38.19415 -36.41701 -35.65197 -34.50967 -33.69411 -31.78325 -31.61180 -30.22733 -28.80538 -27.30717 -27.16824 -25.53757 -23.64031 -23.30512 -22.65055 -22.00277 -21.22540 -20.77033 -19.50100 -18.52192 -18.07664 -17.70257 -17.33947 -17.08802 -16.73026 -16.56864 -16.25434 -15.80998 -15.64646 -15.30736 -15.17211 -15.08721 -14.68437 -14.41105 -14.28847 -14.21432 -13.63495 -13.44393 -13.33639 -13.15900 -12.96146 -12.76296 -12.64195 -12.58600 -12.47251 -12.29202 -12.10256 -11.91827 -11.63033 -11.54697 -11.30873 -11.05531 -10.97295 -10.90614 -10.42016 -10.11424 -10.01289 -9.27135 -8.62830 -5.49991 0.72959 1.38805 1.48684 1.51901 1.61833 1.69436 1.70310 2.19093 2.56061 2.71825 3.01852 3.23557 3.36124 3.39930 3.49950 3.57029 3.70666 3.93820 3.96292 3.99386 4.07591 4.13269 4.26653 4.32375 4.46894 4.49998 4.60357 4.60974 4.63595 4.65568 4.71339 4.75849 4.77451 4.77813 4.86548 4.90095 4.96922 5.04936 5.12131 5.16676 5.28403 5.44972 5.78633 5.92792 5.95786 6.59502 6.67520 7.29248 7.32337 7.61976 8.22901 8.88951 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.002099 C = 0.002042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.914637 B =13337.249159 C =13708.624012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.026 4.026 5 C -0.035 4.035 6 C -0.046 4.046 7 C 0.514 3.486 8 O -0.573 6.573 9 N -0.707 5.707 10 C 0.125 3.875 11 H 0.088 0.912 12 C 0.039 3.961 13 O -0.368 6.368 14 C 0.083 3.917 15 C 0.123 3.877 16 N -0.646 5.646 17 C -0.291 4.291 18 H 0.052 0.948 19 C -0.082 4.082 20 N -0.967 5.967 21 Si 1.105 2.895 22 H -0.304 1.304 23 H -0.255 1.255 24 H -0.268 1.268 25 C 0.083 3.917 26 C -0.114 4.114 27 N -0.296 5.296 28 N -0.131 5.131 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.147 0.853 34 H 0.241 0.759 35 H 0.161 0.839 36 H 0.129 0.871 37 H 0.420 0.580 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.246 0.754 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.097 0.903 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.668 -31.492 2.879 36.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 N -0.083 5.083 4 C -0.178 4.178 5 C -0.176 4.176 6 C -0.087 4.087 7 C 0.302 3.698 8 O -0.451 6.451 9 N -0.362 5.362 10 C 0.018 3.982 11 H 0.106 0.894 12 C -0.039 4.039 13 O -0.285 6.285 14 C 0.042 3.958 15 C -0.003 4.003 16 N -0.376 5.376 17 C -0.418 4.418 18 H 0.070 0.930 19 C -0.274 4.274 20 N -0.612 5.612 21 Si 0.930 3.070 22 H -0.232 1.232 23 H -0.180 1.180 24 H -0.194 1.194 25 C -0.042 4.042 26 C -0.153 4.153 27 N -0.162 5.162 28 N -0.110 5.110 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.165 0.835 34 H 0.258 0.742 35 H 0.178 0.822 36 H 0.147 0.853 37 H 0.258 0.742 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.116 0.884 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.965 -31.712 2.206 36.514 hybrid contribution 0.391 1.377 -0.853 1.667 sum -17.574 -30.334 1.354 35.083 Atomic orbital electron populations 1.22055 0.92720 1.04885 1.02503 1.22558 0.97001 0.74615 1.07557 1.47880 1.29965 1.12835 1.17641 1.24078 0.99047 0.94373 1.00311 1.21800 1.03008 0.96008 0.96735 1.20034 0.94626 0.97520 0.96497 1.21099 0.80775 0.78651 0.89278 1.90758 1.71368 1.61176 1.21829 1.45764 1.35235 1.41205 1.13958 1.22302 0.89860 0.91709 0.94290 0.89355 1.24086 0.86415 0.92132 1.01275 1.88786 1.52470 1.17973 1.69317 1.23127 0.94397 0.84168 0.94121 1.22567 0.98456 0.90033 0.89243 1.45730 1.84732 1.00398 1.06736 1.19974 1.41375 0.81799 0.98629 0.93042 1.27140 0.98160 1.04048 0.98056 1.71025 1.53929 0.98384 1.37814 0.83347 0.78015 0.71853 0.73754 1.23213 1.18022 1.19397 1.23357 0.98444 0.84585 0.97846 1.22587 0.92079 0.96666 1.03918 1.75049 1.09433 1.17154 1.14515 1.78215 1.22594 0.93572 1.16601 0.92243 0.93265 0.87259 0.87781 0.83530 0.74234 0.82165 0.85277 0.74164 0.89800 0.88352 0.92365 0.93419 0.94493 0.93166 0.91778 0.88433 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 10.04 71.98 0.72 -0.12 16 2 C 0.10 0.46 7.17 86.38 0.62 1.08 16 3 N -0.29 -4.29 3.44 -347.74 -1.20 -5.49 16 4 C -0.03 -0.30 11.49 83.49 0.96 0.66 16 5 C -0.04 -0.67 6.00 41.60 0.25 -0.42 16 6 C -0.05 -0.55 6.28 29.10 0.18 -0.36 16 7 C 0.51 10.73 7.82 87.66 0.69 11.41 16 8 O -0.57 -18.39 15.25 -3.05 -0.05 -18.44 16 9 N -0.71 -12.52 5.20 -435.94 -2.27 -14.79 16 10 C 0.12 3.00 3.51 46.39 0.16 3.17 16 11 H 0.09 2.52 7.54 -2.38 -0.02 2.50 16 12 C 0.04 0.94 7.42 72.69 0.54 1.48 16 13 O -0.37 -11.76 11.32 -148.98 -1.69 -13.45 16 14 C 0.08 2.84 1.66 -10.83 -0.02 2.82 16 15 C 0.12 4.95 8.20 83.39 0.68 5.64 16 16 N -0.65 -31.26 3.65 -739.24 -2.70 -33.96 16 17 C -0.29 -16.86 11.08 84.03 0.93 -15.93 16 18 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 19 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 20 N -0.97 -61.99 13.70 21.65 0.30 -61.70 16 21 Si 1.11 51.52 25.17 68.60 1.73 53.24 16 22 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 23 H -0.25 -10.16 6.49 99.48 0.65 -9.52 16 24 H -0.27 -11.62 6.18 99.48 0.62 -11.01 16 25 C 0.08 3.32 5.20 83.48 0.43 3.75 16 26 C -0.11 -3.20 6.20 31.40 0.19 -3.00 16 27 N -0.30 -8.49 11.83 -48.61 -0.58 -9.07 16 28 N -0.13 -3.33 12.91 37.02 0.48 -2.86 16 29 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.05 0.53 8.12 -2.39 -0.02 0.51 16 31 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.15 -0.54 8.07 -2.39 -0.02 -0.56 16 34 H 0.24 -0.13 8.06 -2.91 -0.02 -0.15 16 35 H 0.16 0.29 8.12 -2.38 -0.02 0.27 16 36 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.42 4.68 8.41 -92.70 -0.78 3.90 16 38 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.06 2.25 7.91 -2.39 -0.02 2.23 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.25 15.92 8.73 -92.71 -0.81 15.11 16 43 H 0.05 2.07 7.62 -2.39 -0.02 2.05 16 44 H 0.06 2.45 4.57 -2.39 -0.01 2.44 16 45 H 0.10 2.53 7.45 -2.39 -0.02 2.52 16 46 H 0.08 2.50 7.82 -2.39 -0.02 2.48 16 Total: -1.00 -91.79 377.31 0.88 -90.91 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.04 Total: 9.79 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 6.81 Total: 5.79 kcal Atomic # 7 Polarization: -121.89 SS G_CDS: -5.96 Total: -127.85 kcal Atomic # 8 Polarization: -30.16 SS G_CDS: -1.73 Total: -31.89 kcal Atomic # 14 Polarization: 51.52 SS G_CDS: 1.73 Total: 53.24 kcal Total: -91.79 0.88 -90.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053879772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.369 kcal (2) G-P(sol) polarization free energy of solvation -91.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds