Wall clock time and date at job start Tue Mar 31 2020 19:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47089 * 2 1 4 4 N 1.28520 * 124.44282 * 269.97255 * 3 2 1 5 5 C 1.31137 * 109.05664 * 179.73446 * 4 3 2 6 6 C 1.40919 * 105.77792 * 0.43794 * 5 4 3 7 7 C 1.47800 * 127.23903 * 179.83922 * 6 5 4 8 8 O 1.21563 * 119.99567 * 353.95732 * 7 6 5 9 9 N 1.34775 * 119.99966 * 173.96391 * 7 6 5 10 10 C 1.46979 * 120.72081 * 4.78004 * 9 7 6 11 11 C 1.53161 * 108.44617 * 234.51397 * 10 9 7 12 12 C 1.52508 * 109.79709 * 305.48222 * 11 10 9 13 13 H 1.08995 * 108.41184 * 179.34677 * 12 11 10 14 14 O 1.42697 * 110.61750 * 298.72760 * 12 11 10 15 15 C 1.43062 * 113.87698 * 185.33726 * 14 12 11 16 16 C 1.53222 * 109.46048 * 298.36378 * 15 14 12 17 17 N 1.47181 * 108.69383 * 51.56693 * 16 15 14 18 18 C 1.36938 * 121.22478 * 129.07897 * 17 16 15 19 19 H 1.08004 * 120.00249 * 209.75889 * 18 17 16 20 20 C 1.38814 * 120.00195 * 29.75125 * 18 17 16 21 21 N 1.31620 * 119.99676 * 9.43988 * 20 18 17 22 22 Si 1.86805 * 120.00217 * 189.43820 * 20 18 17 23 23 H 1.48495 * 109.47091 * 89.99957 * 22 20 18 24 24 H 1.48496 * 109.46889 * 210.00427 * 22 20 18 25 25 H 1.48506 * 109.46700 * 330.00151 * 22 20 18 26 26 C 1.47589 * 117.54830 * 309.05488 * 17 16 15 27 27 H 1.09007 * 110.31543 * 172.32118 * 26 17 16 28 28 C 1.46799 * 120.71605 * 184.76313 * 9 7 6 29 29 N 1.28586 * 124.44422 * 90.00608 * 3 2 1 30 30 H 1.09007 * 109.46826 * 300.00075 * 1 2 3 31 31 H 1.09001 * 109.47246 * 59.99921 * 1 2 3 32 32 H 1.08993 * 109.46930 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47463 * 240.00031 * 2 1 3 34 34 H 1.08998 * 109.47474 * 119.99603 * 2 1 3 35 35 H 1.07997 * 127.10948 * 180.29391 * 5 4 3 36 36 H 1.08993 * 109.64018 * 354.20319 * 10 9 7 37 37 H 1.08999 * 109.64074 * 114.83406 * 10 9 7 38 38 H 1.08996 * 109.41709 * 185.37726 * 11 10 9 39 39 H 1.09008 * 109.41240 * 65.57962 * 11 10 9 40 40 H 1.08998 * 109.47390 * 58.36225 * 15 14 12 41 41 H 1.08999 * 109.47261 * 178.37045 * 15 14 12 42 42 H 1.09000 * 109.60632 * 171.33372 * 16 15 14 43 43 H 1.09003 * 109.60136 * 291.81161 * 16 15 14 44 44 H 0.97002 * 119.99590 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.52203 * 5.81692 * 28 9 7 46 46 H 1.09005 * 109.57106 * 245.66286 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0664 -1.0599 5 6 2.6769 3.2604 -0.7120 6 6 2.6858 3.2676 0.6972 7 6 3.0802 4.3826 1.5835 8 8 3.5511 5.3982 1.1096 9 7 2.9179 4.2733 2.9170 10 6 2.4486 3.0157 3.5157 11 6 1.2162 3.3176 4.3734 12 6 1.5465 4.4089 5.3863 13 1 0.6527 4.6137 5.9755 14 8 2.5903 3.9832 6.2612 15 6 2.8740 4.9065 7.3164 16 6 3.3426 6.2371 6.7183 17 7 2.3644 6.6703 5.7074 18 6 1.8350 7.9330 5.7274 19 1 0.8393 8.1072 5.3469 20 6 2.5778 8.9892 6.2369 21 7 3.8501 8.8189 6.5277 22 14 1.7718 10.6522 6.5097 23 1 1.2097 10.7105 7.8829 24 1 2.7839 11.7260 6.3430 25 1 0.6811 10.8419 5.5198 26 6 1.9757 5.6939 4.6712 27 1 1.1540 6.0855 4.0715 28 6 3.2064 5.4077 3.8029 29 7 2.2608 2.0669 1.0604 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5137 0.8900 35 1 2.9572 4.0700 -1.3695 36 1 2.1828 2.3115 2.7274 37 1 3.2347 2.5916 4.1404 38 1 0.9116 2.4137 4.9010 39 1 0.4015 3.6533 3.7317 40 1 1.9730 5.0711 7.9074 41 1 3.6579 4.4991 7.9548 42 1 3.4118 6.9878 7.5055 43 1 4.3178 6.1041 6.2498 44 1 4.3693 9.5571 6.8834 45 1 3.4419 6.2872 3.2036 46 1 4.0549 5.1649 4.4426 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074236649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:30 Heat of formation + Delta-G solvation = 79.941871 kcal Electronic energy + Delta-G solvation = -30476.183566 eV Core-core repulsion = 26405.489123 eV Total energy + Delta-G solvation = -4070.694443 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.78837 -39.94996 -38.43697 -35.73884 -35.13143 -34.60716 -32.95972 -31.62401 -31.46179 -30.63218 -29.36824 -27.46595 -25.80870 -24.59104 -23.95946 -23.31549 -22.59809 -21.74622 -21.29799 -19.82988 -18.36456 -17.64190 -17.03673 -16.80344 -16.68345 -15.63878 -15.39718 -15.29128 -15.15493 -14.96633 -14.51888 -14.41465 -14.05825 -13.67977 -13.63795 -13.19980 -13.13066 -12.72617 -12.65215 -12.43052 -12.28854 -12.07154 -11.91045 -11.81089 -11.27899 -11.21618 -11.01229 -10.82661 -10.68955 -10.56788 -10.32009 -10.20001 -10.05333 -10.02561 -9.73916 -9.54906 -9.51186 -8.94152 -8.59184 -8.20903 -6.69754 -5.84104 -3.33828 1.25102 1.88128 1.93295 3.21080 3.35723 3.42163 3.43252 3.43663 3.79352 4.35335 4.38185 4.42482 4.43155 4.66027 4.75627 4.93293 5.05372 5.16287 5.23531 5.30421 5.33525 5.42320 5.51839 5.59541 5.59835 5.71742 5.77513 5.83810 6.03210 6.04595 6.11550 6.15168 6.24028 6.35769 6.39853 6.47480 6.61909 6.74353 6.76534 7.01693 7.13773 7.54291 7.71294 7.71694 7.93820 8.01857 8.33790 8.40996 9.11272 9.70658 10.29763 11.22688 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.003280 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.414513 B = 8534.794961 C = 9288.871297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 N -0.148 5.148 4 N -0.290 5.290 5 C 0.032 3.968 6 C -0.029 4.029 7 C 0.597 3.403 8 O -0.531 6.531 9 N -0.587 5.587 10 C 0.082 3.918 11 C -0.119 4.119 12 C 0.080 3.920 13 H 0.050 0.950 14 O -0.387 6.387 15 C 0.038 3.962 16 C 0.138 3.862 17 N -0.584 5.584 18 C -0.255 4.255 19 H 0.068 0.932 20 C 0.008 3.992 21 N -0.902 5.902 22 Si 0.908 3.092 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.135 3.865 27 H 0.075 0.925 28 C 0.107 3.893 29 N -0.251 5.251 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.207 0.793 36 H 0.127 0.873 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.029 0.971 44 H 0.256 0.744 45 H 0.090 0.910 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 -19.462 -9.246 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.050 5.050 4 N -0.130 5.130 5 C -0.151 4.151 6 C -0.192 4.192 7 C 0.381 3.619 8 O -0.406 6.406 9 N -0.319 5.319 10 C -0.042 4.042 11 C -0.158 4.158 12 C 0.020 3.980 13 H 0.068 0.932 14 O -0.306 6.306 15 C -0.040 4.040 16 C 0.012 3.988 17 N -0.307 5.307 18 C -0.385 4.385 19 H 0.086 0.914 20 C -0.192 4.192 21 N -0.546 5.546 22 Si 0.738 3.262 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.203 1.203 26 C 0.026 3.974 27 H 0.093 0.907 28 C -0.016 4.016 29 N -0.098 5.098 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.224 0.776 36 H 0.144 0.856 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.058 0.942 41 H 0.098 0.902 42 H 0.116 0.884 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.109 0.891 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.409 -20.195 -9.438 22.938 hybrid contribution -0.129 2.009 0.351 2.044 sum -5.537 -18.186 -9.087 21.071 Atomic orbital electron populations 1.22195 0.92894 1.04004 1.03927 1.22083 0.96226 0.74380 1.06049 1.48488 1.43607 1.13406 0.99496 1.73975 1.17803 1.05543 1.15689 1.24816 1.01497 0.95083 0.93739 1.23311 1.07683 0.93345 0.94878 1.16811 0.78997 0.84559 0.81500 1.90819 1.45250 1.29616 1.74905 1.48123 1.64030 1.14723 1.05029 1.22539 0.96452 0.86333 0.98851 1.21767 0.98009 0.99008 0.97009 1.22239 0.90177 0.94235 0.91302 0.93230 1.87721 1.55783 1.45452 1.41665 1.23348 0.99288 0.92360 0.88977 1.21499 0.91123 0.92571 0.93559 1.44264 1.50347 1.10366 1.25706 1.19176 0.96770 0.83405 1.39108 0.91450 1.25186 0.94959 0.97815 1.01195 1.69954 1.05915 1.31490 1.47220 0.86197 0.78407 0.83518 0.78067 1.21387 1.21552 1.20326 1.21618 0.95405 0.90045 0.90309 0.90731 1.22400 0.99869 0.87636 0.91720 1.74121 1.16301 1.05008 1.14391 0.91146 0.91342 0.89489 0.87216 0.87094 0.77603 0.85623 0.91028 0.90647 0.90853 0.94212 0.90210 0.88396 0.95318 0.93389 0.89126 0.91000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.24 37.16 0.38 -0.45 16 2 C 0.13 0.75 7.24 -4.04 -0.03 0.72 16 3 N -0.15 -1.56 3.94 -10.61 -0.04 -1.60 16 4 N -0.29 -3.44 12.01 30.90 0.37 -3.07 16 5 C 0.03 0.41 12.05 -16.83 -0.20 0.20 16 6 C -0.03 -0.43 6.95 -82.68 -0.57 -1.01 16 7 C 0.60 10.69 7.70 -12.35 -0.10 10.60 16 8 O -0.53 -11.14 16.39 5.31 0.09 -11.05 16 9 N -0.59 -10.40 2.96 -173.90 -0.51 -10.91 16 10 C 0.08 1.21 6.17 -3.70 -0.02 1.18 16 11 C -0.12 -1.71 5.82 -26.90 -0.16 -1.87 16 12 C 0.08 1.45 2.72 -26.88 -0.07 1.38 16 13 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 14 O -0.39 -7.35 9.59 -35.23 -0.34 -7.68 16 15 C 0.04 0.74 6.98 37.27 0.26 1.00 16 16 C 0.14 3.23 4.88 -3.56 -0.02 3.21 16 17 N -0.58 -14.39 2.71 -163.86 -0.44 -14.83 16 18 C -0.26 -6.89 9.70 -15.06 -0.15 -7.04 16 19 H 0.07 1.80 7.85 -52.48 -0.41 1.39 16 20 C 0.01 0.21 5.11 -17.43 -0.09 0.12 16 21 N -0.90 -25.63 10.96 55.49 0.61 -25.03 16 22 Si 0.91 21.56 29.56 -169.99 -5.03 16.53 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 26 C 0.13 2.85 3.03 -67.07 -0.20 2.65 16 27 H 0.07 1.62 8.00 -51.92 -0.42 1.20 16 28 C 0.11 2.24 5.61 -3.72 -0.02 2.22 16 29 N -0.25 -3.16 8.51 33.42 0.28 -2.88 16 30 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.21 2.22 8.06 -52.49 -0.42 1.79 16 36 H 0.13 1.67 3.75 -107.29 -0.40 1.26 16 37 H 0.07 1.09 7.94 -51.93 -0.41 0.68 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.01 8.14 -51.92 -0.42 0.58 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.10 2.53 6.16 -51.93 -0.32 2.21 16 43 H 0.03 0.72 7.17 -51.93 -0.37 0.35 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.09 2.16 7.02 -51.93 -0.36 1.79 16 46 H 0.07 1.60 6.56 -51.93 -0.34 1.26 16 LS Contribution 364.34 15.07 5.49 5.49 Total: -1.00 -32.46 364.34 -7.34 -39.80 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -6.82 Total: 2.31 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -0.99 Total: 12.91 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: 0.26 Total: -58.31 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.25 Total: -18.74 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.46 -7.34 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074236649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.741 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds