Wall clock time and date at job start Tue Mar 31 2020 19:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47217 * 2 1 4 4 N 1.28715 * 126.03340 * 85.03196 * 3 2 1 5 5 N 1.28517 * 110.64016 * 180.02562 * 4 3 2 6 6 C 1.33323 * 109.43526 * 0.02562 * 5 4 3 7 7 C 1.37000 * 106.37384 * 0.26041 * 6 5 4 8 8 C 1.47241 * 127.19044 * 179.73973 * 7 6 5 9 9 O 1.21617 * 119.99829 * 205.37463 * 8 7 6 10 10 N 1.34776 * 119.99577 * 25.37008 * 8 7 6 11 11 C 1.46840 * 120.40835 * 0.10560 * 10 8 7 12 12 C 1.53824 * 108.99778 * 127.69442 * 11 10 8 13 13 C 1.52775 * 108.73883 * 54.07751 * 12 11 10 14 14 H 1.09005 * 108.95198 * 56.77136 * 13 12 11 15 15 O 1.42597 * 111.12160 * 177.30250 * 13 12 11 16 16 C 1.43152 * 113.63331 * 183.62503 * 15 13 12 17 17 C 1.53205 * 109.73565 * 298.30795 * 16 15 13 18 18 N 1.47354 * 108.79958 * 51.21465 * 17 16 15 19 19 C 1.36939 * 121.30192 * 129.73695 * 18 17 16 20 20 H 1.08001 * 120.00090 * 208.55762 * 19 18 17 21 21 C 1.38808 * 119.99973 * 28.55972 * 19 18 17 22 22 N 1.31627 * 119.99865 * 11.16492 * 21 19 18 23 23 Si 1.86792 * 120.00214 * 191.17047 * 21 19 18 24 24 H 1.48496 * 109.47261 * 59.99633 * 23 21 19 25 25 H 1.48501 * 109.47212 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47171 * 299.99568 * 23 21 19 27 27 C 1.46874 * 117.39786 * 309.76435 * 18 17 16 28 28 H 1.09009 * 109.65261 * 291.64080 * 27 18 17 29 29 C 1.47122 * 120.40558 * 180.37446 * 10 8 7 30 30 H 1.08990 * 109.47437 * 184.90895 * 1 2 3 31 31 H 1.09001 * 109.47099 * 304.91864 * 1 2 3 32 32 H 1.09004 * 109.47054 * 64.90655 * 1 2 3 33 33 H 1.09001 * 109.46683 * 240.00148 * 2 1 3 34 34 H 1.08997 * 109.46967 * 120.00510 * 2 1 3 35 35 H 1.08000 * 126.81293 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.50302 * 247.67912 * 11 10 8 37 37 H 1.08998 * 109.51071 * 7.81339 * 11 10 8 38 38 H 1.09005 * 109.73228 * 294.23103 * 12 11 10 39 39 H 1.09004 * 109.50830 * 173.78763 * 12 11 10 40 40 H 1.08992 * 109.42940 * 178.23001 * 16 15 13 41 41 H 1.08996 * 109.38414 * 58.35998 * 16 15 13 42 42 H 1.08991 * 109.58034 * 291.42201 * 17 16 15 43 43 H 1.09000 * 109.58297 * 171.01052 * 17 16 15 44 44 H 0.96995 * 119.99975 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.72981 * 352.89120 * 29 10 8 46 46 H 1.09004 * 109.72933 * 113.56246 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1858 2.1251 1.0370 5 7 2.6262 3.2836 0.6971 6 6 2.7652 3.3341 -0.6279 7 6 2.3706 2.1118 -1.1045 8 6 2.3360 1.6734 -2.5097 9 8 1.5709 0.7927 -2.8532 10 7 3.1522 2.2482 -3.4152 11 6 4.0810 3.3108 -3.0098 12 6 5.4980 2.9450 -3.4836 13 6 5.4566 2.6658 -4.9850 14 1 5.0539 3.5399 -5.4967 15 8 6.7591 2.3810 -5.4908 16 6 6.7952 2.1915 -6.9093 17 6 5.9247 0.9907 -7.2932 18 7 4.5945 1.1532 -6.6805 19 6 3.4497 1.0238 -7.4206 20 1 2.5585 1.5633 -7.1357 21 6 3.4346 0.1992 -8.5372 22 7 4.4375 -0.6231 -8.7616 23 14 1.9911 0.2567 -9.7213 24 1 1.8668 1.6251 -10.2842 25 1 2.2159 -0.7129 -10.8233 26 1 0.7431 -0.0962 -8.9979 27 6 4.5445 1.4601 -5.2450 28 1 4.8877 0.5976 -4.6736 29 6 3.1193 1.8228 -4.8232 30 1 -0.3634 -1.0238 0.0879 31 1 -0.3633 0.5883 0.8427 32 1 -0.3633 0.4358 -0.9307 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.1154 4.1735 -1.2103 36 1 3.7747 4.2540 -3.4622 37 1 4.0722 3.4072 -1.9241 38 1 5.8445 2.0562 -2.9561 39 1 6.1742 3.7766 -3.2852 40 1 7.8225 2.0101 -7.2248 41 1 6.4167 3.0863 -7.4035 42 1 6.3859 0.0734 -6.9272 43 1 5.8243 0.9440 -8.3775 44 1 4.4272 -1.1991 -9.5419 45 1 2.4715 0.9526 -4.9297 46 1 2.7475 2.6372 -5.4451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074237295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:16 Heat of formation + Delta-G solvation = 73.304842 kcal Electronic energy + Delta-G solvation = -30651.051352 eV Core-core repulsion = 26580.069106 eV Total energy + Delta-G solvation = -4070.982246 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.53014 -40.19923 -38.61899 -36.50963 -35.45731 -34.80133 -32.58065 -31.57106 -31.18176 -30.98585 -29.77288 -27.21865 -25.91457 -24.75176 -24.29597 -23.38253 -22.61892 -21.85750 -21.17955 -19.81604 -19.46573 -17.59826 -17.31161 -16.97555 -16.55868 -16.01404 -15.64330 -15.26683 -15.19382 -14.94358 -14.53536 -14.29173 -14.15353 -13.78982 -13.76247 -13.28115 -13.18161 -12.93646 -12.74239 -12.57788 -12.46849 -12.26208 -11.76121 -11.74980 -11.43721 -11.21824 -11.07801 -11.01035 -10.93041 -10.67185 -10.39828 -10.34367 -10.28948 -10.13333 -10.05409 -9.69851 -9.52707 -9.07454 -8.61258 -8.58089 -6.79219 -5.90112 -3.39072 0.82722 1.86788 2.12760 2.81182 2.96136 3.31771 3.37384 3.37888 4.00320 4.17328 4.23096 4.35925 4.45553 4.60029 4.69234 4.75136 4.90391 5.05214 5.13477 5.22103 5.25887 5.29908 5.32366 5.42540 5.55891 5.57980 5.65962 5.73349 5.75381 5.81437 5.83669 6.03820 6.04787 6.16237 6.21655 6.25315 6.36036 6.49008 6.52946 6.75337 7.07063 7.27265 7.47447 7.62350 7.83499 7.94159 8.17915 8.26527 9.03131 9.65433 10.23189 11.17366 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.003865 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.272599 B = 7242.739733 C = 8695.935240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.108 3.892 3 N -0.253 5.253 4 N -0.063 5.063 5 N -0.274 5.274 6 C -0.019 4.019 7 C -0.056 4.056 8 C 0.589 3.411 9 O -0.528 6.528 10 N -0.589 5.589 11 C 0.078 3.922 12 C -0.123 4.123 13 C 0.077 3.923 14 H 0.054 0.946 15 O -0.389 6.389 16 C 0.038 3.962 17 C 0.143 3.857 18 N -0.588 5.588 19 C -0.261 4.261 20 H 0.071 0.929 21 C 0.009 3.991 22 N -0.902 5.902 23 Si 0.905 3.095 24 H -0.282 1.282 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.137 3.863 28 H 0.038 0.962 29 C 0.125 3.875 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.210 0.790 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.041 0.959 42 H 0.027 0.973 43 H 0.099 0.901 44 H 0.256 0.744 45 H 0.106 0.894 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 6.139 13.633 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.050 5.050 4 N -0.044 5.044 5 N -0.137 5.137 6 C -0.178 4.178 7 C -0.191 4.191 8 C 0.374 3.626 9 O -0.404 6.404 10 N -0.322 5.322 11 C -0.044 4.044 12 C -0.162 4.162 13 C 0.017 3.983 14 H 0.072 0.928 15 O -0.308 6.308 16 C -0.040 4.040 17 C 0.017 3.983 18 N -0.313 5.313 19 C -0.390 4.390 20 H 0.089 0.911 21 C -0.190 4.190 22 N -0.546 5.546 23 Si 0.735 3.265 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.206 1.206 27 C 0.029 3.971 28 H 0.055 0.945 29 C 0.005 3.995 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.125 0.875 35 H 0.226 0.774 36 H 0.098 0.902 37 H 0.126 0.874 38 H 0.092 0.908 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.059 0.941 42 H 0.046 0.954 43 H 0.117 0.883 44 H 0.067 0.933 45 H 0.124 0.876 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.746 5.543 14.924 16.015 hybrid contribution -0.722 -0.221 -2.106 2.237 sum -2.469 5.322 12.818 14.097 Atomic orbital electron populations 1.22105 0.92367 1.04034 1.03814 1.22334 0.97129 0.75505 1.06250 1.47890 1.39976 1.13572 1.03581 1.78222 1.16263 0.98118 1.11773 1.74912 1.15192 1.10971 1.12575 1.24274 1.03678 0.97862 0.91977 1.22077 1.11033 0.94751 0.91235 1.16726 0.81372 0.82064 0.82483 1.90843 1.39093 1.30578 1.79907 1.47971 1.37051 1.37453 1.09691 1.22704 0.88893 0.90518 1.02310 1.21920 0.95786 1.02948 0.95547 1.22418 0.85185 0.97713 0.92998 0.92832 1.87748 1.27982 1.91979 1.23073 1.23364 1.00513 0.99760 0.80324 1.21480 0.83581 0.92656 1.00563 1.43997 1.02677 1.83443 1.01141 1.19080 0.90853 1.21513 1.07564 0.91127 1.25120 0.97731 0.95663 1.00511 1.69963 1.31791 1.24161 1.28696 0.86327 0.82180 0.77430 0.80596 1.20865 1.21489 1.20644 1.21296 0.92471 0.95006 0.88316 0.94485 1.21910 0.98894 1.02095 0.76643 0.89539 0.91639 0.90732 0.86625 0.87505 0.77363 0.90189 0.87410 0.90819 0.89889 0.90040 0.94081 0.95438 0.88324 0.93341 0.87602 0.90288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 10.24 37.16 0.38 -1.08 16 2 C 0.11 1.05 6.61 -4.04 -0.03 1.02 16 3 N -0.25 -3.14 3.39 -57.37 -0.19 -3.33 16 4 N -0.06 -0.85 13.14 60.35 0.79 -0.05 16 5 N -0.27 -3.64 12.35 30.47 0.38 -3.27 16 6 C -0.02 -0.21 9.77 -17.35 -0.17 -0.38 16 7 C -0.06 -0.72 6.61 -82.33 -0.54 -1.27 16 8 C 0.59 8.77 7.51 -12.60 -0.09 8.68 16 9 O -0.53 -9.31 14.89 5.26 0.08 -9.24 16 10 N -0.59 -8.45 2.97 -173.75 -0.52 -8.96 16 11 C 0.08 0.85 5.44 -3.43 -0.02 0.83 16 12 C -0.12 -1.57 5.84 -26.42 -0.15 -1.73 16 13 C 0.08 1.30 2.47 -26.64 -0.07 1.23 16 14 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 15 O -0.39 -7.32 10.49 -35.23 -0.37 -7.69 16 16 C 0.04 0.72 6.96 37.26 0.26 0.98 16 17 C 0.14 3.28 5.40 -3.47 -0.02 3.26 16 18 N -0.59 -13.92 3.04 -164.35 -0.50 -14.42 16 19 C -0.26 -6.67 8.87 -15.06 -0.13 -6.80 16 20 H 0.07 1.74 6.28 -52.49 -0.33 1.41 16 21 C 0.01 0.24 5.08 -17.43 -0.09 0.15 16 22 N -0.90 -25.05 10.98 55.49 0.61 -24.44 16 23 Si 0.91 20.86 29.57 -169.99 -5.03 15.84 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 C 0.14 2.73 3.03 -67.52 -0.20 2.53 16 28 H 0.04 0.83 8.14 -51.92 -0.42 0.40 16 29 C 0.13 2.24 4.50 -3.71 -0.02 2.23 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.12 1.23 6.91 -51.93 -0.36 0.87 16 34 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.21 1.65 5.80 -52.49 -0.30 1.35 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.11 0.97 3.36 -51.93 -0.17 0.80 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 2.48 6.17 -51.93 -0.32 2.16 16 44 H 0.26 6.93 8.31 -40.82 -0.34 6.60 16 45 H 0.11 2.19 6.81 -51.93 -0.35 1.83 16 46 H 0.08 1.40 7.37 -51.93 -0.38 1.02 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -31.40 359.16 -6.67 -38.07 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -6.43 Total: 2.43 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -0.90 Total: 9.65 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.57 Total: -54.48 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.29 Total: -16.92 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.84 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.40 -6.67 -38.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.375 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds