Wall clock time and date at job start Tue Mar 31 2020 19:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47217 * 2 1 4 4 N 1.28715 * 126.03340 * 85.03196 * 3 2 1 5 5 N 1.28517 * 110.64016 * 180.02562 * 4 3 2 6 6 C 1.33323 * 109.43526 * 0.02562 * 5 4 3 7 7 C 1.37000 * 106.37384 * 0.26041 * 6 5 4 8 8 C 1.47241 * 127.19044 * 179.73973 * 7 6 5 9 9 O 1.21617 * 119.99829 * 205.37463 * 8 7 6 10 10 N 1.34776 * 119.99577 * 25.37008 * 8 7 6 11 11 C 1.46840 * 120.40835 * 0.10560 * 10 8 7 12 12 C 1.53824 * 108.99778 * 127.69442 * 11 10 8 13 13 C 1.52775 * 108.73883 * 54.07751 * 12 11 10 14 14 H 1.09005 * 108.95198 * 56.77136 * 13 12 11 15 15 O 1.42597 * 111.12160 * 177.30250 * 13 12 11 16 16 C 1.43152 * 113.63331 * 183.62503 * 15 13 12 17 17 C 1.53205 * 109.73565 * 298.30795 * 16 15 13 18 18 N 1.47354 * 108.79958 * 51.21465 * 17 16 15 19 19 C 1.36939 * 121.30192 * 129.73695 * 18 17 16 20 20 H 1.08001 * 120.00090 * 208.55762 * 19 18 17 21 21 C 1.38808 * 119.99973 * 28.55972 * 19 18 17 22 22 N 1.31627 * 119.99865 * 11.16492 * 21 19 18 23 23 Si 1.86792 * 120.00214 * 191.17047 * 21 19 18 24 24 H 1.48496 * 109.47261 * 59.99633 * 23 21 19 25 25 H 1.48501 * 109.47212 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47171 * 299.99568 * 23 21 19 27 27 C 1.46874 * 117.39786 * 309.76435 * 18 17 16 28 28 H 1.09009 * 109.65261 * 291.64080 * 27 18 17 29 29 C 1.47122 * 120.40558 * 180.37446 * 10 8 7 30 30 H 1.08990 * 109.47437 * 184.90895 * 1 2 3 31 31 H 1.09001 * 109.47099 * 304.91864 * 1 2 3 32 32 H 1.09004 * 109.47054 * 64.90655 * 1 2 3 33 33 H 1.09001 * 109.46683 * 240.00148 * 2 1 3 34 34 H 1.08997 * 109.46967 * 120.00510 * 2 1 3 35 35 H 1.08000 * 126.81293 * 180.02562 * 6 5 4 36 36 H 1.09003 * 109.50302 * 247.67912 * 11 10 8 37 37 H 1.08998 * 109.51071 * 7.81339 * 11 10 8 38 38 H 1.09005 * 109.73228 * 294.23103 * 12 11 10 39 39 H 1.09004 * 109.50830 * 173.78763 * 12 11 10 40 40 H 1.08992 * 109.42940 * 178.23001 * 16 15 13 41 41 H 1.08996 * 109.38414 * 58.35998 * 16 15 13 42 42 H 1.08991 * 109.58034 * 291.42201 * 17 16 15 43 43 H 1.09000 * 109.58297 * 171.01052 * 17 16 15 44 44 H 0.96995 * 119.99975 * 180.02562 * 22 21 19 45 45 H 1.09003 * 109.72981 * 352.89120 * 29 10 8 46 46 H 1.09004 * 109.72933 * 113.56246 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1858 2.1251 1.0370 5 7 2.6262 3.2836 0.6971 6 6 2.7652 3.3341 -0.6279 7 6 2.3706 2.1118 -1.1045 8 6 2.3360 1.6734 -2.5097 9 8 1.5709 0.7927 -2.8532 10 7 3.1522 2.2482 -3.4152 11 6 4.0810 3.3108 -3.0098 12 6 5.4980 2.9450 -3.4836 13 6 5.4566 2.6658 -4.9850 14 1 5.0539 3.5399 -5.4967 15 8 6.7591 2.3810 -5.4908 16 6 6.7952 2.1915 -6.9093 17 6 5.9247 0.9907 -7.2932 18 7 4.5945 1.1532 -6.6805 19 6 3.4497 1.0238 -7.4206 20 1 2.5585 1.5633 -7.1357 21 6 3.4346 0.1992 -8.5372 22 7 4.4375 -0.6231 -8.7616 23 14 1.9911 0.2567 -9.7213 24 1 1.8668 1.6251 -10.2842 25 1 2.2159 -0.7129 -10.8233 26 1 0.7431 -0.0962 -8.9979 27 6 4.5445 1.4601 -5.2450 28 1 4.8877 0.5976 -4.6736 29 6 3.1193 1.8228 -4.8232 30 1 -0.3634 -1.0238 0.0879 31 1 -0.3633 0.5883 0.8427 32 1 -0.3633 0.4358 -0.9307 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.1154 4.1735 -1.2103 36 1 3.7747 4.2540 -3.4622 37 1 4.0722 3.4072 -1.9241 38 1 5.8445 2.0562 -2.9561 39 1 6.1742 3.7766 -3.2852 40 1 7.8225 2.0101 -7.2248 41 1 6.4167 3.0863 -7.4035 42 1 6.3859 0.0734 -6.9272 43 1 5.8243 0.9440 -8.3775 44 1 4.4272 -1.1991 -9.5419 45 1 2.4715 0.9526 -4.9297 46 1 2.7475 2.6372 -5.4451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074237295.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:15 Heat of formation + Delta-G solvation = 50.938904 kcal Electronic energy + Delta-G solvation = -30652.021212 eV Core-core repulsion = 26580.069106 eV Total energy + Delta-G solvation = -4071.952106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.49600 -41.48660 -40.03500 -37.73075 -36.56469 -36.37770 -33.94921 -33.08827 -32.52311 -31.83785 -31.18226 -28.93076 -27.24532 -25.79544 -25.66905 -24.54418 -23.89862 -23.07116 -22.53264 -21.40859 -20.55543 -18.81906 -18.59870 -18.26803 -17.67130 -17.39249 -17.04816 -16.82720 -16.40625 -16.18508 -15.92572 -15.62995 -15.38875 -15.12941 -15.07537 -14.68654 -14.65638 -14.11341 -13.96311 -13.81851 -13.51356 -13.21804 -13.06151 -12.94398 -12.82601 -12.62370 -12.59484 -12.42417 -12.27337 -12.11584 -12.07009 -11.91665 -11.74376 -11.31529 -11.30524 -11.24443 -10.72902 -10.55448 -10.50368 -9.84056 -8.72145 -7.90081 -5.41681 -0.17487 0.91618 1.16295 1.47027 1.47800 1.54091 1.71255 1.84229 2.46613 2.80373 3.07465 3.26532 3.29185 3.42630 3.59328 3.77141 3.84324 3.85797 3.90340 4.03090 4.17065 4.18991 4.22524 4.27490 4.39579 4.48076 4.53336 4.56372 4.60545 4.64013 4.75133 4.78395 4.86502 4.89751 4.98990 5.07779 5.07938 5.13633 5.24632 5.31158 5.36699 5.56883 5.61496 6.11809 6.26895 6.36053 6.77717 7.05395 7.20684 7.72391 8.27898 9.15424 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013747 B = 0.003865 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.272599 B = 7242.739733 C = 8695.935240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.101 3.899 3 N -0.251 5.251 4 N -0.072 5.072 5 N -0.292 5.292 6 C 0.001 3.999 7 C -0.073 4.073 8 C 0.590 3.410 9 O -0.564 6.564 10 N -0.587 5.587 11 C 0.078 3.922 12 C -0.116 4.116 13 C 0.079 3.921 14 H 0.064 0.936 15 O -0.393 6.393 16 C 0.051 3.949 17 C 0.147 3.853 18 N -0.605 5.605 19 C -0.261 4.261 20 H 0.079 0.921 21 C -0.046 4.046 22 N -0.936 5.936 23 Si 0.966 3.034 24 H -0.271 1.271 25 H -0.295 1.295 26 H -0.280 1.280 27 C 0.134 3.866 28 H 0.005 0.995 29 C 0.142 3.858 30 H 0.109 0.891 31 H 0.068 0.932 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.134 0.866 35 H 0.246 0.754 36 H 0.114 0.886 37 H 0.133 0.867 38 H 0.061 0.939 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.051 0.949 42 H -0.006 1.006 43 H 0.073 0.927 44 H 0.251 0.749 45 H 0.069 0.931 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.381 8.814 15.270 17.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.019 4.019 3 N -0.048 5.048 4 N -0.052 5.052 5 N -0.154 5.154 6 C -0.158 4.158 7 C -0.208 4.208 8 C 0.376 3.624 9 O -0.443 6.443 10 N -0.319 5.319 11 C -0.043 4.043 12 C -0.154 4.154 13 C 0.020 3.980 14 H 0.081 0.919 15 O -0.312 6.312 16 C -0.026 4.026 17 C 0.021 3.979 18 N -0.330 5.330 19 C -0.391 4.391 20 H 0.096 0.904 21 C -0.241 4.241 22 N -0.582 5.582 23 Si 0.794 3.206 24 H -0.197 1.197 25 H -0.222 1.222 26 H -0.206 1.206 27 C 0.027 3.973 28 H 0.023 0.977 29 C 0.019 3.981 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.120 0.880 34 H 0.152 0.848 35 H 0.262 0.738 36 H 0.132 0.868 37 H 0.150 0.850 38 H 0.080 0.920 39 H 0.136 0.864 40 H 0.124 0.876 41 H 0.070 0.930 42 H 0.012 0.988 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.088 0.912 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.737 8.261 16.611 18.633 hybrid contribution -0.723 -1.113 -2.540 2.866 sum -2.460 7.147 14.071 15.972 Atomic orbital electron populations 1.22060 0.91652 1.05339 1.02500 1.22565 0.97709 0.74677 1.06918 1.48138 1.39269 1.14146 1.03290 1.78204 1.16519 0.98456 1.11997 1.74918 1.15910 1.11047 1.13479 1.24830 1.01719 0.97890 0.91393 1.21870 1.12921 0.95743 0.90243 1.16953 0.80762 0.81369 0.83285 1.90828 1.40644 1.32199 1.80610 1.47938 1.37678 1.38164 1.08089 1.23052 0.86854 0.90385 1.03962 1.21954 0.97759 1.03852 0.91855 1.22535 0.83563 0.95896 0.96014 0.91853 1.87756 1.28976 1.91808 1.22700 1.23188 1.00891 0.97792 0.80755 1.21319 0.84188 0.93461 0.98924 1.44277 1.02444 1.83410 1.02891 1.19439 0.91644 1.20639 1.07332 0.90377 1.25852 1.00054 0.95850 1.02368 1.70134 1.33649 1.25359 1.29080 0.85368 0.79312 0.77540 0.78408 1.19703 1.22170 1.20572 1.21445 0.94712 0.95443 0.85742 0.97731 1.21436 0.96695 1.00879 0.79045 0.87253 0.91268 0.93244 0.87959 0.84789 0.73789 0.86795 0.85023 0.91992 0.86432 0.87583 0.93034 0.98779 0.90877 0.94032 0.91218 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.10 1.88 6.61 86.38 0.57 2.45 16 3 N -0.25 -5.86 3.39 -335.42 -1.14 -7.00 16 4 N -0.07 -1.77 13.14 37.02 0.49 -1.29 16 5 N -0.29 -6.97 12.35 -57.50 -0.71 -7.68 16 6 C 0.00 0.03 9.77 84.18 0.82 0.85 16 7 C -0.07 -1.75 6.61 40.41 0.27 -1.49 16 8 C 0.59 17.17 7.51 86.61 0.65 17.82 16 9 O -0.56 -20.42 14.89 -4.08 -0.06 -20.48 16 10 N -0.59 -15.95 2.97 -821.86 -2.44 -18.39 16 11 C 0.08 1.38 5.44 86.59 0.47 1.85 16 12 C -0.12 -2.54 5.84 30.80 0.18 -2.36 16 13 C 0.08 2.52 2.47 30.66 0.08 2.60 16 14 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 15 O -0.39 -14.08 10.49 -148.98 -1.56 -15.65 16 16 C 0.05 1.89 6.96 72.05 0.50 2.39 16 17 C 0.15 6.96 5.40 86.28 0.47 7.43 16 18 N -0.61 -29.38 3.04 -673.87 -2.05 -31.43 16 19 C -0.26 -13.61 8.87 84.03 0.75 -12.86 16 20 H 0.08 3.88 6.28 -2.91 -0.02 3.86 16 21 C -0.05 -2.47 5.08 84.86 0.43 -2.04 16 22 N -0.94 -54.16 10.98 21.65 0.24 -53.92 16 23 Si 0.97 43.73 29.57 68.60 2.03 45.76 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 C 0.13 5.38 3.03 45.05 0.14 5.52 16 28 H 0.01 0.23 8.14 -2.38 -0.02 0.21 16 29 C 0.14 5.07 4.50 86.26 0.39 5.46 16 30 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 2.21 6.91 -2.39 -0.02 2.20 16 34 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.25 2.58 5.80 -2.91 -0.02 2.56 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.13 1.74 3.36 -2.39 -0.01 1.73 16 38 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.12 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.11 3.35 8.14 -2.39 -0.02 3.34 16 41 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 42 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 43 H 0.07 3.83 6.17 -2.39 -0.01 3.82 16 44 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.07 3.00 6.81 -2.39 -0.02 2.98 16 46 H 0.08 2.92 7.37 -2.39 -0.02 2.91 16 Total: -1.00 -72.02 359.16 2.24 -69.78 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 1.01 Total: 14.61 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: 6.44 Total: 25.69 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -5.62 Total: -119.71 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -1.62 Total: -36.13 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -72.02 2.24 -69.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237295.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.723 kcal (2) G-P(sol) polarization free energy of solvation -72.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds