Wall clock time and date at job start Tue Mar 31 2020 19:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47228 * 2 1 4 4 N 1.28713 * 126.03642 * 264.64248 * 3 2 1 5 5 N 1.28511 * 110.63884 * 180.30132 * 4 3 2 6 6 C 1.33325 * 109.43712 * 359.71359 * 5 4 3 7 7 C 1.36999 * 106.37285 * 0.02562 * 6 5 4 8 8 C 1.47238 * 127.18889 * 180.02562 * 7 6 5 9 9 O 1.21619 * 119.99682 * 205.90983 * 8 7 6 10 10 N 1.34769 * 119.99971 * 25.91167 * 8 7 6 11 11 C 1.46987 * 120.72248 * 0.76057 * 10 8 7 12 12 C 1.53157 * 108.44323 * 125.48321 * 11 10 8 13 13 C 1.52502 * 109.79768 * 54.52295 * 12 11 10 14 14 H 1.08998 * 108.93744 * 180.33842 * 13 12 11 15 15 O 1.42684 * 110.62993 * 61.29664 * 13 12 11 16 16 C 1.43082 * 113.87174 * 174.64060 * 15 13 12 17 17 C 1.52809 * 109.51762 * 61.51685 * 16 15 13 18 18 N 1.47178 * 108.92501 * 308.65763 * 17 16 15 19 19 C 1.36933 * 121.22608 * 230.91037 * 18 17 16 20 20 H 1.08001 * 120.00279 * 153.14704 * 19 18 17 21 21 C 1.38820 * 119.99507 * 333.14489 * 19 18 17 22 22 N 1.31618 * 120.00170 * 340.25627 * 21 19 18 23 23 Si 1.86799 * 119.99570 * 160.25758 * 21 19 18 24 24 H 1.48502 * 109.47290 * 265.07003 * 23 21 19 25 25 H 1.48504 * 109.47363 * 25.06978 * 23 21 19 26 26 H 1.48499 * 109.47209 * 145.06857 * 23 21 19 27 27 C 1.47594 * 117.54934 * 50.63628 * 18 17 16 28 28 H 1.09007 * 110.31183 * 186.93339 * 27 18 17 29 29 C 1.46798 * 120.72175 * 180.78717 * 10 8 7 30 30 H 1.08999 * 109.46890 * 304.47470 * 1 2 3 31 31 H 1.08998 * 109.47073 * 64.47002 * 1 2 3 32 32 H 1.08998 * 109.47437 * 184.48131 * 1 2 3 33 33 H 1.08999 * 109.46934 * 239.99649 * 2 1 3 34 34 H 1.09004 * 109.47150 * 120.00231 * 2 1 3 35 35 H 1.08002 * 126.80945 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.64301 * 245.17080 * 11 10 8 37 37 H 1.09003 * 109.63867 * 5.80041 * 11 10 8 38 38 H 1.09008 * 109.41478 * 174.62074 * 12 11 10 39 39 H 1.08996 * 109.41997 * 294.41605 * 12 11 10 40 40 H 1.08998 * 109.47997 * 181.64467 * 16 15 13 41 41 H 1.09004 * 109.47214 * 301.65766 * 16 15 13 42 42 H 1.08999 * 109.53043 * 188.80382 * 17 16 15 43 43 H 1.08997 * 109.44503 * 68.46471 * 17 16 15 44 44 H 0.96994 * 119.99688 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.52181 * 114.36909 * 29 10 8 46 46 H 1.09002 * 109.57413 * 354.21317 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3624 2.0627 -1.0363 5 7 2.7513 3.2393 -0.6960 6 6 2.6639 3.3699 0.6280 7 6 2.1868 2.1767 1.1030 8 6 1.9163 1.8216 2.5061 9 8 1.9538 0.6577 2.8568 10 7 1.6272 2.7864 3.4016 11 6 1.5613 4.1963 2.9915 12 6 0.1995 4.7593 3.4090 13 6 -0.0190 4.5297 4.9007 14 1 -0.9934 4.9297 5.1812 15 8 0.9806 5.2029 5.6646 16 6 0.7724 5.1347 7.0786 17 6 0.8085 3.6753 7.5301 18 7 -0.1112 2.8925 6.6889 19 6 -1.0536 2.0686 7.2439 20 1 -1.9633 1.8485 6.7049 21 6 -0.8398 1.5162 8.4994 22 7 0.3799 1.4487 8.9896 23 14 -2.2830 0.8686 9.4929 24 1 -2.7545 1.9232 10.4261 25 1 -3.3869 0.4911 8.5741 26 1 -1.8550 -0.3233 10.2684 27 6 0.0157 3.0330 5.2252 28 1 -0.7934 2.5029 4.7226 29 6 1.3717 2.4520 4.8080 30 1 -0.3633 0.5817 0.8472 31 1 -0.3633 0.4429 -0.9273 32 1 -0.3634 -1.0245 0.0803 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9186 4.2430 1.2103 36 1 2.3561 4.7582 3.4822 37 1 1.6716 4.2687 1.9095 38 1 0.1695 5.8284 3.1986 39 1 -0.5878 4.2581 2.8460 40 1 1.5567 5.6938 7.5888 41 1 -0.1988 5.5645 7.3240 42 1 0.4968 3.6085 8.5725 43 1 1.8214 3.2873 7.4234 44 1 0.5293 1.0624 9.8667 45 1 2.1577 2.8772 5.4321 46 1 1.3567 1.3688 4.9289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074237296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:19 Heat of formation + Delta-G solvation = 71.900204 kcal Electronic energy + Delta-G solvation = -30876.612107 eV Core-core repulsion = 26805.568951 eV Total energy + Delta-G solvation = -4071.043156 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.46738 -40.17320 -38.62526 -36.27891 -35.35683 -34.73576 -32.45416 -31.69424 -31.20603 -30.95190 -29.50536 -27.54341 -25.82281 -24.65890 -24.07813 -23.23048 -23.01893 -21.97300 -21.52037 -19.79834 -18.59702 -17.42464 -17.35762 -16.98286 -16.50661 -15.89835 -15.51036 -15.48239 -15.15724 -14.94167 -14.55778 -14.24659 -14.15536 -13.95487 -13.74396 -13.24602 -13.17885 -12.75527 -12.60200 -12.47940 -12.41769 -12.25441 -11.84593 -11.82516 -11.46141 -11.17379 -11.15243 -11.00892 -10.83974 -10.70578 -10.37098 -10.30144 -10.27656 -10.12593 -9.92871 -9.72315 -9.45662 -9.10416 -8.69201 -8.41969 -6.86266 -5.95468 -3.38210 0.89498 1.92615 2.19125 2.93760 3.07257 3.29038 3.37012 3.38091 4.10956 4.23283 4.27872 4.34090 4.50029 4.59625 4.77718 4.86360 4.95083 5.04434 5.15008 5.19596 5.24770 5.30155 5.34547 5.53369 5.57343 5.65781 5.69201 5.76189 5.78922 5.87269 5.94640 5.99333 6.07355 6.19554 6.24236 6.28179 6.33949 6.47880 6.61304 6.77404 6.96644 7.35465 7.44223 7.64354 7.79245 8.05563 8.21127 8.24162 8.99205 9.61435 10.18786 11.12338 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.003744 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.215528 B = 7477.425259 C = 8613.616372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.102 3.898 3 N -0.254 5.254 4 N -0.066 5.066 5 N -0.275 5.275 6 C -0.018 4.018 7 C -0.055 4.055 8 C 0.586 3.414 9 O -0.535 6.535 10 N -0.582 5.582 11 C 0.080 3.920 12 C -0.121 4.121 13 C 0.080 3.920 14 H 0.053 0.947 15 O -0.387 6.387 16 C 0.040 3.960 17 C 0.137 3.863 18 N -0.582 5.582 19 C -0.261 4.261 20 H 0.069 0.931 21 C 0.010 3.990 22 N -0.895 5.895 23 Si 0.904 3.096 24 H -0.286 1.286 25 H -0.278 1.278 26 H -0.290 1.290 27 C 0.135 3.865 28 H 0.076 0.924 29 C 0.107 3.893 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.209 0.791 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.041 0.959 42 H 0.091 0.909 43 H 0.030 0.970 44 H 0.256 0.744 45 H 0.074 0.926 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 4.327 -13.894 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.018 4.018 3 N -0.051 5.051 4 N -0.046 5.046 5 N -0.138 5.138 6 C -0.177 4.177 7 C -0.189 4.189 8 C 0.370 3.630 9 O -0.413 6.413 10 N -0.315 5.315 11 C -0.042 4.042 12 C -0.160 4.160 13 C 0.021 3.979 14 H 0.071 0.929 15 O -0.306 6.306 16 C -0.038 4.038 17 C 0.012 3.988 18 N -0.304 5.304 19 C -0.390 4.390 20 H 0.087 0.913 21 C -0.190 4.190 22 N -0.538 5.538 23 Si 0.733 3.267 24 H -0.213 1.213 25 H -0.203 1.203 26 H -0.216 1.216 27 C 0.026 3.974 28 H 0.094 0.906 29 C -0.016 4.016 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.140 0.860 35 H 0.226 0.774 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.048 0.952 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.966 3.646 -15.103 15.660 hybrid contribution -0.981 -0.564 2.019 2.315 sum 0.984 3.082 -13.084 13.478 Atomic orbital electron populations 1.22119 0.92622 1.04349 1.03310 1.22419 0.96715 0.75804 1.06862 1.47880 1.40158 1.13398 1.03702 1.78215 1.14563 1.00062 1.11797 1.74901 1.16975 1.09294 1.12615 1.24267 1.03444 0.98025 0.91957 1.22116 1.12021 0.93419 0.91388 1.16768 0.78138 0.85606 0.82456 1.90812 1.52756 1.18213 1.79477 1.48041 1.66934 1.06519 1.09972 1.22512 0.99000 0.81193 1.01491 1.21783 0.97359 1.01821 0.95030 1.22226 0.91538 0.93932 0.90225 0.92857 1.87719 1.49791 1.75080 1.18012 1.23245 1.00036 0.99861 0.80630 1.21350 0.93545 0.86717 0.97205 1.44296 1.39359 1.48925 0.97848 1.19162 0.95759 1.23153 1.00932 0.91299 1.25047 0.96111 0.97987 0.99891 1.70058 1.18421 1.46922 1.18364 0.86256 0.82059 0.78122 0.80236 1.21324 1.20271 1.21648 1.21616 0.95085 0.93164 0.87527 0.90610 1.22520 0.99567 1.02729 0.76817 0.91427 0.91552 0.89308 0.87292 0.85960 0.77424 0.89695 0.88234 0.90020 0.90487 0.89969 0.94033 0.89074 0.95188 0.93374 0.90736 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 10.24 37.16 0.38 -1.10 16 2 C 0.10 1.02 6.76 -4.04 -0.03 0.99 16 3 N -0.25 -3.25 3.39 -57.37 -0.19 -3.44 16 4 N -0.07 -0.91 13.14 60.35 0.79 -0.12 16 5 N -0.27 -3.79 12.35 30.47 0.38 -3.41 16 6 C -0.02 -0.21 9.78 -17.35 -0.17 -0.38 16 7 C -0.05 -0.73 6.61 -82.33 -0.54 -1.28 16 8 C 0.59 9.14 7.59 -12.61 -0.10 9.04 16 9 O -0.54 -9.90 14.66 5.26 0.08 -9.82 16 10 N -0.58 -8.81 2.96 -174.11 -0.52 -9.33 16 11 C 0.08 0.95 5.33 -3.70 -0.02 0.93 16 12 C -0.12 -1.48 5.82 -26.91 -0.16 -1.64 16 13 C 0.08 1.30 2.73 -26.89 -0.07 1.23 16 14 H 0.05 0.91 8.11 -51.93 -0.42 0.48 16 15 O -0.39 -6.62 9.59 -35.23 -0.34 -6.96 16 16 C 0.04 0.71 6.96 37.06 0.26 0.97 16 17 C 0.14 3.01 4.92 -3.77 -0.02 3.00 16 18 N -0.58 -13.45 2.71 -164.12 -0.44 -13.90 16 19 C -0.26 -6.74 9.66 -15.06 -0.15 -6.89 16 20 H 0.07 1.77 7.90 -52.49 -0.41 1.35 16 21 C 0.01 0.25 4.87 -17.43 -0.08 0.17 16 22 N -0.89 -24.63 11.38 55.49 0.63 -24.00 16 23 Si 0.90 20.78 29.60 -169.99 -5.03 15.75 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 C 0.13 2.60 3.03 -67.07 -0.20 2.40 16 28 H 0.08 1.51 7.99 -51.93 -0.42 1.09 16 29 C 0.11 2.00 5.63 -3.72 -0.02 1.98 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.12 1.35 6.58 -51.93 -0.34 1.01 16 35 H 0.21 1.86 5.87 -52.49 -0.31 1.55 16 36 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 37 H 0.10 0.98 3.37 -51.93 -0.17 0.80 16 38 H 0.08 0.85 8.14 -51.92 -0.42 0.42 16 39 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 42 H 0.09 2.23 6.28 -51.93 -0.33 1.90 16 43 H 0.03 0.70 7.19 -51.93 -0.37 0.33 16 44 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 45 H 0.07 1.49 6.58 -51.93 -0.34 1.15 16 46 H 0.09 2.03 7.00 -51.93 -0.36 1.67 16 LS Contribution 359.26 15.07 5.41 5.41 Total: -1.00 -30.71 359.26 -6.56 -37.27 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.41 Total: 3.11 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -0.92 Total: 9.42 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: 0.65 Total: -54.19 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.26 Total: -16.78 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.71 -6.56 -37.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.172 kcal (2) G-P(sol) polarization free energy of solvation -30.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds