Wall clock time and date at job start Tue Mar 31 2020 19:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47228 * 2 1 4 4 N 1.28713 * 126.03642 * 264.64248 * 3 2 1 5 5 N 1.28511 * 110.63884 * 180.30132 * 4 3 2 6 6 C 1.33325 * 109.43712 * 359.71359 * 5 4 3 7 7 C 1.36999 * 106.37285 * 0.02562 * 6 5 4 8 8 C 1.47238 * 127.18889 * 180.02562 * 7 6 5 9 9 O 1.21619 * 119.99682 * 205.90983 * 8 7 6 10 10 N 1.34769 * 119.99971 * 25.91167 * 8 7 6 11 11 C 1.46987 * 120.72248 * 0.76057 * 10 8 7 12 12 C 1.53157 * 108.44323 * 125.48321 * 11 10 8 13 13 C 1.52502 * 109.79768 * 54.52295 * 12 11 10 14 14 H 1.08998 * 108.93744 * 180.33842 * 13 12 11 15 15 O 1.42684 * 110.62993 * 61.29664 * 13 12 11 16 16 C 1.43082 * 113.87174 * 174.64060 * 15 13 12 17 17 C 1.52809 * 109.51762 * 61.51685 * 16 15 13 18 18 N 1.47178 * 108.92501 * 308.65763 * 17 16 15 19 19 C 1.36933 * 121.22608 * 230.91037 * 18 17 16 20 20 H 1.08001 * 120.00279 * 153.14704 * 19 18 17 21 21 C 1.38820 * 119.99507 * 333.14489 * 19 18 17 22 22 N 1.31618 * 120.00170 * 340.25627 * 21 19 18 23 23 Si 1.86799 * 119.99570 * 160.25758 * 21 19 18 24 24 H 1.48502 * 109.47290 * 265.07003 * 23 21 19 25 25 H 1.48504 * 109.47363 * 25.06978 * 23 21 19 26 26 H 1.48499 * 109.47209 * 145.06857 * 23 21 19 27 27 C 1.47594 * 117.54934 * 50.63628 * 18 17 16 28 28 H 1.09007 * 110.31183 * 186.93339 * 27 18 17 29 29 C 1.46798 * 120.72175 * 180.78717 * 10 8 7 30 30 H 1.08999 * 109.46890 * 304.47470 * 1 2 3 31 31 H 1.08998 * 109.47073 * 64.47002 * 1 2 3 32 32 H 1.08998 * 109.47437 * 184.48131 * 1 2 3 33 33 H 1.08999 * 109.46934 * 239.99649 * 2 1 3 34 34 H 1.09004 * 109.47150 * 120.00231 * 2 1 3 35 35 H 1.08002 * 126.80945 * 180.02562 * 6 5 4 36 36 H 1.09000 * 109.64301 * 245.17080 * 11 10 8 37 37 H 1.09003 * 109.63867 * 5.80041 * 11 10 8 38 38 H 1.09008 * 109.41478 * 174.62074 * 12 11 10 39 39 H 1.08996 * 109.41997 * 294.41605 * 12 11 10 40 40 H 1.08998 * 109.47997 * 181.64467 * 16 15 13 41 41 H 1.09004 * 109.47214 * 301.65766 * 16 15 13 42 42 H 1.08999 * 109.53043 * 188.80382 * 17 16 15 43 43 H 1.08997 * 109.44503 * 68.46471 * 17 16 15 44 44 H 0.96994 * 119.99688 * 180.02562 * 22 21 19 45 45 H 1.08998 * 109.52181 * 114.36909 * 29 10 8 46 46 H 1.09002 * 109.57413 * 354.21317 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.3624 2.0627 -1.0363 5 7 2.7513 3.2393 -0.6960 6 6 2.6639 3.3699 0.6280 7 6 2.1868 2.1767 1.1030 8 6 1.9163 1.8216 2.5061 9 8 1.9538 0.6577 2.8568 10 7 1.6272 2.7864 3.4016 11 6 1.5613 4.1963 2.9915 12 6 0.1995 4.7593 3.4090 13 6 -0.0190 4.5297 4.9007 14 1 -0.9934 4.9297 5.1812 15 8 0.9806 5.2029 5.6646 16 6 0.7724 5.1347 7.0786 17 6 0.8085 3.6753 7.5301 18 7 -0.1112 2.8925 6.6889 19 6 -1.0536 2.0686 7.2439 20 1 -1.9633 1.8485 6.7049 21 6 -0.8398 1.5162 8.4994 22 7 0.3799 1.4487 8.9896 23 14 -2.2830 0.8686 9.4929 24 1 -2.7545 1.9232 10.4261 25 1 -3.3869 0.4911 8.5741 26 1 -1.8550 -0.3233 10.2684 27 6 0.0157 3.0330 5.2252 28 1 -0.7934 2.5029 4.7226 29 6 1.3717 2.4520 4.8080 30 1 -0.3633 0.5817 0.8472 31 1 -0.3633 0.4429 -0.9273 32 1 -0.3634 -1.0245 0.0803 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.9186 4.2430 1.2103 36 1 2.3561 4.7582 3.4822 37 1 1.6716 4.2687 1.9095 38 1 0.1695 5.8284 3.1986 39 1 -0.5878 4.2581 2.8460 40 1 1.5567 5.6938 7.5888 41 1 -0.1988 5.5645 7.3240 42 1 0.4968 3.6085 8.5725 43 1 1.8214 3.2873 7.4234 44 1 0.5293 1.0624 9.8667 45 1 2.1577 2.8772 5.4321 46 1 1.3567 1.3688 4.9289 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074237296.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:18 Heat of formation + Delta-G solvation = 50.721565 kcal Electronic energy + Delta-G solvation = -30877.530482 eV Core-core repulsion = 26805.568951 eV Total energy + Delta-G solvation = -4071.961531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.48498 -41.51439 -40.02137 -37.50504 -36.44930 -36.34898 -33.86902 -33.19695 -32.55674 -31.83820 -30.90724 -29.25228 -27.07211 -25.78559 -25.52229 -24.53581 -24.30091 -23.10195 -22.91520 -21.02964 -19.97271 -18.94018 -18.53129 -18.35822 -17.53342 -17.26473 -17.00372 -16.87845 -16.55999 -16.25528 -15.94113 -15.59211 -15.34287 -15.12635 -15.07344 -14.83175 -14.31940 -14.05894 -13.93839 -13.78608 -13.56678 -13.22347 -13.10905 -13.04191 -12.84127 -12.70476 -12.60932 -12.42060 -12.26080 -12.10393 -12.05395 -11.87268 -11.66410 -11.36468 -11.23863 -11.14556 -10.77063 -10.55139 -10.48231 -9.81238 -8.72847 -7.94483 -5.39971 -0.16444 0.93394 1.17176 1.44113 1.46036 1.54657 1.77568 1.87345 2.45497 2.88060 3.08417 3.20182 3.31864 3.43684 3.60911 3.80730 3.83107 3.83251 3.99218 4.11210 4.15182 4.20162 4.25003 4.28390 4.43145 4.50041 4.55756 4.57825 4.62145 4.76156 4.78552 4.82298 4.89206 4.90434 4.97529 5.03064 5.03791 5.20628 5.28419 5.31842 5.36519 5.54548 5.60471 6.20733 6.25370 6.35816 6.82061 7.03601 7.21233 7.70557 8.24979 9.10633 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.003744 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.215528 B = 7477.425259 C = 8613.616372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.095 3.905 3 N -0.250 5.250 4 N -0.071 5.071 5 N -0.291 5.291 6 C 0.001 3.999 7 C -0.071 4.071 8 C 0.588 3.412 9 O -0.572 6.572 10 N -0.580 5.580 11 C 0.079 3.921 12 C -0.115 4.115 13 C 0.086 3.914 14 H 0.051 0.949 15 O -0.380 6.380 16 C 0.053 3.947 17 C 0.144 3.856 18 N -0.600 5.600 19 C -0.269 4.269 20 H 0.066 0.934 21 C -0.039 4.039 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.282 1.282 25 H -0.270 1.270 26 H -0.297 1.297 27 C 0.132 3.868 28 H 0.064 0.936 29 C 0.127 3.873 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.137 0.863 34 H 0.108 0.892 35 H 0.241 0.759 36 H 0.096 0.904 37 H 0.127 0.873 38 H 0.116 0.884 39 H 0.086 0.914 40 H 0.110 0.890 41 H 0.045 0.955 42 H 0.061 0.939 43 H 0.006 0.994 44 H 0.252 0.748 45 H 0.060 0.940 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.232 6.282 -16.031 17.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.024 4.024 3 N -0.048 5.048 4 N -0.051 5.051 5 N -0.153 5.153 6 C -0.158 4.158 7 C -0.205 4.205 8 C 0.374 3.626 9 O -0.452 6.452 10 N -0.312 5.312 11 C -0.042 4.042 12 C -0.153 4.153 13 C 0.026 3.974 14 H 0.069 0.931 15 O -0.299 6.299 16 C -0.025 4.025 17 C 0.019 3.981 18 N -0.323 5.323 19 C -0.398 4.398 20 H 0.084 0.916 21 C -0.236 4.236 22 N -0.571 5.571 23 Si 0.792 3.208 24 H -0.209 1.209 25 H -0.195 1.195 26 H -0.223 1.223 27 C 0.024 3.976 28 H 0.083 0.917 29 C 0.002 3.998 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.126 0.874 33 H 0.155 0.845 34 H 0.126 0.874 35 H 0.257 0.743 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.064 0.936 42 H 0.080 0.920 43 H 0.024 0.976 44 H 0.061 0.939 45 H 0.078 0.922 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.573 5.641 -17.295 18.260 hybrid contribution -0.843 -1.230 2.607 3.003 sum 0.730 4.411 -14.689 15.354 Atomic orbital electron populations 1.22089 0.91761 1.05252 1.02609 1.22655 0.97397 0.74826 1.07534 1.48132 1.39365 1.13990 1.03295 1.78197 1.14638 1.00347 1.11967 1.74912 1.17644 1.09440 1.13338 1.24743 1.01480 0.98158 0.91457 1.21829 1.13923 0.94442 0.90332 1.16989 0.77255 0.84992 0.83328 1.90797 1.54273 1.19874 1.80265 1.47957 1.66693 1.08191 1.08316 1.22809 0.99341 0.78810 1.03206 1.21830 0.97722 1.04194 0.91539 1.22249 0.91447 0.90875 0.92819 0.93128 1.87736 1.50093 1.74649 1.17396 1.23078 1.01372 0.96728 0.81333 1.21195 0.91763 0.89374 0.95788 1.44499 1.39160 1.48955 0.99684 1.19426 0.96318 1.22884 1.01217 0.91621 1.25726 0.98117 0.98869 1.00890 1.70194 1.20114 1.48423 1.18396 0.85311 0.79501 0.77203 0.78772 1.20881 1.19467 1.22344 1.21762 0.94690 0.95808 0.85303 0.91741 1.21914 0.98869 0.99909 0.79059 0.93847 0.90624 0.87378 0.84506 0.87390 0.74309 0.88543 0.85533 0.86566 0.89536 0.87207 0.93636 0.92046 0.97628 0.93900 0.92184 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 10.24 71.98 0.74 -1.93 16 2 C 0.10 1.80 6.76 86.38 0.58 2.38 16 3 N -0.25 -5.99 3.39 -335.43 -1.14 -7.13 16 4 N -0.07 -1.81 13.14 37.02 0.49 -1.32 16 5 N -0.29 -7.23 12.35 -57.50 -0.71 -7.94 16 6 C 0.00 0.03 9.78 84.17 0.82 0.85 16 7 C -0.07 -1.78 6.61 40.41 0.27 -1.51 16 8 C 0.59 18.18 7.59 86.61 0.66 18.84 16 9 O -0.57 -21.90 14.66 -4.09 -0.06 -21.96 16 10 N -0.58 -17.08 2.96 -823.02 -2.44 -19.52 16 11 C 0.08 1.60 5.33 86.34 0.46 2.06 16 12 C -0.11 -2.38 5.82 30.48 0.18 -2.20 16 13 C 0.09 2.61 2.73 30.49 0.08 2.69 16 14 H 0.05 1.61 8.11 -2.39 -0.02 1.59 16 15 O -0.38 -12.12 9.59 -148.98 -1.43 -13.55 16 16 C 0.05 1.81 6.96 71.92 0.50 2.32 16 17 C 0.14 6.51 4.92 86.19 0.42 6.94 16 18 N -0.60 -28.54 2.71 -673.15 -1.82 -30.37 16 19 C -0.27 -14.29 9.66 84.04 0.81 -13.48 16 20 H 0.07 3.45 7.90 -2.91 -0.02 3.43 16 21 C -0.04 -2.12 4.87 84.86 0.41 -1.71 16 22 N -0.93 -53.14 11.38 21.65 0.25 -52.89 16 23 Si 0.96 43.71 29.60 68.60 2.03 45.74 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 27 C 0.13 5.15 3.03 44.95 0.14 5.29 16 28 H 0.06 2.63 7.99 -2.38 -0.02 2.61 16 29 C 0.13 4.91 5.63 86.43 0.49 5.39 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.11 2.40 6.58 -2.38 -0.02 2.39 16 35 H 0.24 3.19 5.87 -2.91 -0.02 3.17 16 36 H 0.10 1.84 7.94 -2.39 -0.02 1.82 16 37 H 0.13 1.93 3.37 -2.39 -0.01 1.92 16 38 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 41 H 0.05 1.55 8.13 -2.38 -0.02 1.53 16 42 H 0.06 3.13 6.28 -2.39 -0.01 3.11 16 43 H 0.01 0.28 7.19 -2.39 -0.02 0.26 16 44 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 45 H 0.06 2.49 6.58 -2.39 -0.02 2.47 16 46 H 0.05 2.42 7.00 -2.39 -0.02 2.41 16 Total: -1.00 -69.87 359.26 2.73 -67.13 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: 1.01 Total: 15.87 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 6.56 Total: 25.93 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -5.38 Total: -119.17 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.49 Total: -35.50 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -69.87 2.73 -67.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237296.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.855 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds