Wall clock time and date at job start Tue Mar 31 2020 19:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47317 * 2 1 4 4 N 1.28715 * 126.03238 * 274.98353 * 3 2 1 5 5 N 1.28519 * 110.63847 * 180.26539 * 4 3 2 6 6 C 1.33328 * 109.43832 * 359.75332 * 5 4 3 7 7 C 1.37003 * 106.36788 * 0.02562 * 6 5 4 8 8 C 1.47240 * 127.18591 * 179.97438 * 7 6 5 9 9 O 1.21617 * 119.99769 * 151.40012 * 8 7 6 10 10 N 1.34771 * 119.99754 * 331.39718 * 8 7 6 11 11 C 1.46982 * 120.72397 * 350.83134 * 10 8 7 12 12 C 1.53158 * 108.44823 * 234.51867 * 11 10 8 13 13 C 1.52516 * 109.78982 * 305.47397 * 12 11 10 14 14 H 1.08999 * 108.40726 * 179.34880 * 13 12 11 15 15 O 1.42686 * 110.62200 * 298.72806 * 13 12 11 16 16 C 1.43064 * 113.88197 * 185.33620 * 15 13 12 17 17 C 1.53234 * 109.45722 * 298.37278 * 16 15 13 18 18 N 1.47180 * 108.69764 * 51.56333 * 17 16 15 19 19 C 1.36932 * 121.22417 * 129.07262 * 18 17 16 20 20 H 1.07994 * 119.99967 * 210.75421 * 19 18 17 21 21 C 1.38818 * 119.99869 * 30.76298 * 19 18 17 22 22 N 1.31622 * 119.99608 * 219.67916 * 21 19 18 23 23 Si 1.86791 * 120.00128 * 39.67675 * 21 19 18 24 24 H 1.48496 * 109.47220 * 84.64955 * 23 21 19 25 25 H 1.48508 * 109.47136 * 204.64731 * 23 21 19 26 26 H 1.48496 * 109.47362 * 324.64726 * 23 21 19 27 27 C 1.47593 * 117.54557 * 309.05619 * 18 17 16 28 28 H 1.08993 * 110.31610 * 172.32435 * 27 18 17 29 29 C 1.46799 * 120.71901 * 170.81267 * 10 8 7 30 30 H 1.09000 * 109.46657 * 64.99828 * 1 2 3 31 31 H 1.08990 * 109.47329 * 184.99815 * 1 2 3 32 32 H 1.08998 * 109.46926 * 305.00229 * 1 2 3 33 33 H 1.08996 * 109.47489 * 239.99638 * 2 1 3 34 34 H 1.09007 * 109.46746 * 119.99967 * 2 1 3 35 35 H 1.07989 * 126.81292 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.63713 * 354.20199 * 11 10 8 37 37 H 1.08997 * 109.64018 * 114.82957 * 11 10 8 38 38 H 1.08996 * 109.41955 * 185.38347 * 12 11 10 39 39 H 1.08995 * 109.41898 * 65.57261 * 12 11 10 40 40 H 1.09009 * 109.47162 * 58.36152 * 16 15 13 41 41 H 1.08998 * 109.47878 * 178.37150 * 16 15 13 42 42 H 1.09001 * 109.59317 * 171.33321 * 17 16 15 43 43 H 1.09003 * 109.59476 * 291.79930 * 17 16 15 44 44 H 0.96994 * 119.99813 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.52066 * 5.81913 * 29 10 8 46 46 H 1.08996 * 109.57540 * 245.66908 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1855 2.1252 -1.0370 5 7 2.6318 3.2816 -0.6976 6 6 2.7707 3.3323 0.6275 7 6 2.3758 2.1100 1.1041 8 6 2.3465 1.6697 2.5088 9 8 1.5410 0.8317 2.8666 10 7 3.2123 2.1952 3.3978 11 6 4.3184 3.0540 2.9513 12 6 5.6297 2.4751 3.4907 13 6 5.5370 2.3088 5.0040 14 1 6.4755 1.8855 5.3619 15 8 5.3273 3.5707 5.6362 16 6 5.3500 3.5132 7.0655 17 6 4.2201 2.6027 7.5577 18 7 4.3045 1.3182 6.8441 19 6 4.3019 0.1283 7.5217 20 1 4.8328 -0.7225 7.1209 21 6 3.6166 0.0155 8.7236 22 7 4.1383 -0.6733 9.7165 23 14 1.9540 0.8411 8.9319 24 1 0.8902 -0.0463 8.3973 25 1 1.7061 1.0982 10.3734 26 1 1.9440 2.1279 8.1907 27 6 4.3917 1.3600 5.3714 28 1 4.5846 0.3631 4.9753 29 6 3.0710 1.9227 4.8334 30 1 -0.3633 0.4344 -0.9314 31 1 -0.3633 -1.0236 0.0895 32 1 -0.3633 0.5895 0.8418 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.1250 4.1701 1.2094 36 1 4.3484 3.0760 1.8619 37 1 4.1774 4.0635 3.3375 38 1 6.4504 3.1509 3.2502 39 1 5.8139 1.5045 3.0302 40 1 6.3086 3.1148 7.3981 41 1 5.2122 4.5153 7.4718 42 1 4.3273 2.4336 8.6292 43 1 3.2575 3.0717 7.3538 44 1 3.6597 -0.7518 10.5564 45 1 2.2746 1.1948 4.9892 46 1 2.8278 2.8464 5.3583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074237297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:23 Heat of formation + Delta-G solvation = 69.994423 kcal Electronic energy + Delta-G solvation = -30865.478905 eV Core-core repulsion = 26794.353108 eV Total energy + Delta-G solvation = -4071.125797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.50887 -40.30573 -38.77229 -36.33153 -35.44351 -34.87346 -32.49358 -31.92339 -31.38406 -31.00285 -29.84811 -27.78250 -25.84271 -24.76284 -24.09108 -23.37983 -23.09541 -22.04068 -21.61823 -19.85825 -18.79744 -17.62870 -17.21046 -17.05913 -16.69177 -15.99369 -15.69173 -15.54398 -15.35656 -15.08533 -14.59143 -14.30008 -14.23916 -14.13092 -13.86058 -13.38749 -13.21566 -12.80904 -12.70464 -12.60852 -12.49454 -12.36339 -12.17253 -11.88020 -11.78270 -11.54864 -11.24111 -11.11125 -11.04694 -10.69286 -10.62723 -10.38920 -10.31143 -10.14594 -9.96091 -9.61536 -9.52219 -9.36607 -8.64134 -8.39383 -7.08934 -6.24019 -3.43146 0.83648 1.86709 2.13849 2.81422 2.95138 3.31965 3.42755 3.49689 4.02122 4.10971 4.19735 4.42541 4.48732 4.57608 4.60755 4.74584 4.87212 4.91444 4.95893 5.07795 5.14721 5.24425 5.27930 5.41153 5.49130 5.52579 5.58701 5.69846 5.75753 5.77742 5.79181 5.84004 5.93383 5.96580 6.07379 6.16038 6.21547 6.30407 6.41341 6.50252 6.62148 6.71038 7.31049 7.60614 7.76218 7.94582 8.14422 8.18208 8.75633 9.53916 9.96079 10.90177 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.003959 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.769064 B = 7070.914316 C = 8233.368785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.109 3.891 3 N -0.255 5.255 4 N -0.065 5.065 5 N -0.275 5.275 6 C -0.008 4.008 7 C -0.058 4.058 8 C 0.587 3.413 9 O -0.531 6.531 10 N -0.586 5.586 11 C 0.095 3.905 12 C -0.122 4.122 13 C 0.080 3.920 14 H 0.059 0.941 15 O -0.384 6.384 16 C 0.047 3.953 17 C 0.106 3.894 18 N -0.589 5.589 19 C -0.283 4.283 20 H 0.080 0.920 21 C 0.053 3.947 22 N -0.867 5.867 23 Si 0.831 3.169 24 H -0.286 1.286 25 H -0.295 1.295 26 H -0.259 1.259 27 C 0.134 3.866 28 H 0.085 0.915 29 C 0.103 3.897 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.201 0.799 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.051 0.949 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.035 0.965 44 H 0.266 0.734 45 H 0.092 0.908 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 6.517 -15.941 17.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.011 4.011 3 N -0.052 5.052 4 N -0.045 5.045 5 N -0.138 5.138 6 C -0.168 4.168 7 C -0.192 4.192 8 C 0.372 3.628 9 O -0.407 6.407 10 N -0.319 5.319 11 C -0.027 4.027 12 C -0.161 4.161 13 C 0.020 3.980 14 H 0.077 0.923 15 O -0.303 6.303 16 C -0.031 4.031 17 C -0.019 4.019 18 N -0.312 5.312 19 C -0.410 4.410 20 H 0.098 0.902 21 C -0.150 4.150 22 N -0.505 5.505 23 Si 0.657 3.343 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.184 1.184 27 C 0.026 3.974 28 H 0.103 0.897 29 C -0.021 4.021 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.132 0.868 35 H 0.218 0.782 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.053 0.947 44 H 0.075 0.925 45 H 0.110 0.890 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.798 6.154 -17.145 18.234 hybrid contribution -1.030 -0.012 1.693 1.982 sum -1.829 6.142 -15.453 16.729 Atomic orbital electron populations 1.22092 0.92394 1.04265 1.03492 1.22305 0.97133 0.75563 1.06115 1.47903 1.40064 1.13558 1.03684 1.78221 1.16272 0.98196 1.11797 1.74904 1.15259 1.11033 1.12565 1.24049 1.03352 0.97553 0.91844 1.22127 1.11084 0.94847 0.91191 1.16786 0.81807 0.81687 0.82557 1.90839 1.39000 1.31621 1.79259 1.47971 1.27443 1.48742 1.07748 1.22177 0.85783 0.94732 1.00050 1.21809 0.97439 1.02295 0.94538 1.22236 0.98532 0.85498 0.91694 0.92323 1.87727 1.93653 1.29529 1.19410 1.23141 0.99564 0.99946 0.80480 1.21997 0.95738 0.86560 0.97623 1.44572 1.85575 1.02205 0.98857 1.18619 1.28491 0.90482 1.03405 0.90214 1.25310 0.97915 0.96385 0.95430 1.70145 1.36054 1.42301 1.02030 0.87653 0.89106 0.80912 0.76648 1.21322 1.22121 1.18375 1.21727 0.91812 0.97788 0.86111 0.89733 1.22487 1.01396 1.01972 0.76201 0.91607 0.89516 0.90919 0.87489 0.86804 0.78186 0.89180 0.89788 0.89845 0.90285 0.93112 0.89705 0.90435 0.94676 0.92464 0.88965 0.90867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.24 37.16 0.38 -1.06 16 2 C 0.11 1.03 6.62 -4.04 -0.03 1.00 16 3 N -0.25 -3.10 3.39 -57.37 -0.19 -3.29 16 4 N -0.06 -0.86 13.14 60.35 0.79 -0.06 16 5 N -0.27 -3.67 12.35 30.47 0.38 -3.29 16 6 C -0.01 -0.09 9.66 -17.35 -0.17 -0.26 16 7 C -0.06 -0.74 6.38 -82.33 -0.53 -1.26 16 8 C 0.59 8.63 7.42 -12.61 -0.09 8.54 16 9 O -0.53 -9.31 15.09 5.26 0.08 -9.24 16 10 N -0.59 -8.28 2.96 -174.11 -0.52 -8.79 16 11 C 0.10 1.04 5.05 -3.70 -0.02 1.03 16 12 C -0.12 -1.40 5.82 -26.90 -0.16 -1.56 16 13 C 0.08 1.22 2.72 -26.88 -0.07 1.15 16 14 H 0.06 0.96 8.13 -51.93 -0.42 0.53 16 15 O -0.38 -6.08 9.59 -35.23 -0.34 -6.42 16 16 C 0.05 0.76 6.98 37.28 0.26 1.02 16 17 C 0.11 2.12 4.18 -3.55 -0.01 2.10 16 18 N -0.59 -12.88 2.37 -163.86 -0.39 -13.27 16 19 C -0.28 -7.39 9.85 -15.06 -0.15 -7.54 16 20 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 21 C 0.05 1.44 4.72 -17.43 -0.08 1.36 16 22 N -0.87 -24.91 13.97 55.49 0.78 -24.14 16 23 Si 0.83 20.32 27.12 -169.99 -4.61 15.70 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.26 -5.98 5.07 56.52 0.29 -5.69 16 27 C 0.13 2.44 3.03 -67.07 -0.20 2.23 16 28 H 0.08 1.62 7.99 -51.93 -0.42 1.20 16 29 C 0.10 1.78 5.63 -3.72 -0.02 1.76 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.11 1.15 7.01 -51.93 -0.36 0.78 16 35 H 0.20 1.71 6.59 -52.49 -0.35 1.37 16 36 H 0.09 0.84 4.42 -51.93 -0.23 0.61 16 37 H 0.08 0.88 7.94 -51.93 -0.41 0.47 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.08 1.67 6.53 -51.93 -0.34 1.33 16 43 H 0.04 0.71 5.66 -51.93 -0.29 0.42 16 44 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.09 1.85 7.00 -51.93 -0.36 1.48 16 46 H 0.07 1.32 6.56 -51.93 -0.34 0.98 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -31.36 356.89 -6.12 -37.47 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -6.58 Total: 1.44 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: -0.89 Total: 8.51 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.85 Total: -52.85 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.26 Total: -15.65 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -4.61 Total: 15.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.36 -6.12 -37.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.469 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds