Wall clock time and date at job start Tue Mar 31 2020 19:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47317 * 2 1 4 4 N 1.28715 * 126.03238 * 274.98353 * 3 2 1 5 5 N 1.28519 * 110.63847 * 180.26539 * 4 3 2 6 6 C 1.33328 * 109.43832 * 359.75332 * 5 4 3 7 7 C 1.37003 * 106.36788 * 0.02562 * 6 5 4 8 8 C 1.47240 * 127.18591 * 179.97438 * 7 6 5 9 9 O 1.21617 * 119.99769 * 151.40012 * 8 7 6 10 10 N 1.34771 * 119.99754 * 331.39718 * 8 7 6 11 11 C 1.46982 * 120.72397 * 350.83134 * 10 8 7 12 12 C 1.53158 * 108.44823 * 234.51867 * 11 10 8 13 13 C 1.52516 * 109.78982 * 305.47397 * 12 11 10 14 14 H 1.08999 * 108.40726 * 179.34880 * 13 12 11 15 15 O 1.42686 * 110.62200 * 298.72806 * 13 12 11 16 16 C 1.43064 * 113.88197 * 185.33620 * 15 13 12 17 17 C 1.53234 * 109.45722 * 298.37278 * 16 15 13 18 18 N 1.47180 * 108.69764 * 51.56333 * 17 16 15 19 19 C 1.36932 * 121.22417 * 129.07262 * 18 17 16 20 20 H 1.07994 * 119.99967 * 210.75421 * 19 18 17 21 21 C 1.38818 * 119.99869 * 30.76298 * 19 18 17 22 22 N 1.31622 * 119.99608 * 219.67916 * 21 19 18 23 23 Si 1.86791 * 120.00128 * 39.67675 * 21 19 18 24 24 H 1.48496 * 109.47220 * 84.64955 * 23 21 19 25 25 H 1.48508 * 109.47136 * 204.64731 * 23 21 19 26 26 H 1.48496 * 109.47362 * 324.64726 * 23 21 19 27 27 C 1.47593 * 117.54557 * 309.05619 * 18 17 16 28 28 H 1.08993 * 110.31610 * 172.32435 * 27 18 17 29 29 C 1.46799 * 120.71901 * 170.81267 * 10 8 7 30 30 H 1.09000 * 109.46657 * 64.99828 * 1 2 3 31 31 H 1.08990 * 109.47329 * 184.99815 * 1 2 3 32 32 H 1.08998 * 109.46926 * 305.00229 * 1 2 3 33 33 H 1.08996 * 109.47489 * 239.99638 * 2 1 3 34 34 H 1.09007 * 109.46746 * 119.99967 * 2 1 3 35 35 H 1.07989 * 126.81292 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.63713 * 354.20199 * 11 10 8 37 37 H 1.08997 * 109.64018 * 114.82957 * 11 10 8 38 38 H 1.08996 * 109.41955 * 185.38347 * 12 11 10 39 39 H 1.08995 * 109.41898 * 65.57261 * 12 11 10 40 40 H 1.09009 * 109.47162 * 58.36152 * 16 15 13 41 41 H 1.08998 * 109.47878 * 178.37150 * 16 15 13 42 42 H 1.09001 * 109.59317 * 171.33321 * 17 16 15 43 43 H 1.09003 * 109.59476 * 291.79930 * 17 16 15 44 44 H 0.96994 * 119.99813 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.52066 * 5.81913 * 29 10 8 46 46 H 1.08996 * 109.57540 * 245.66908 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.1855 2.1252 -1.0370 5 7 2.6318 3.2816 -0.6976 6 6 2.7707 3.3323 0.6275 7 6 2.3758 2.1100 1.1041 8 6 2.3465 1.6697 2.5088 9 8 1.5410 0.8317 2.8666 10 7 3.2123 2.1952 3.3978 11 6 4.3184 3.0540 2.9513 12 6 5.6297 2.4751 3.4907 13 6 5.5370 2.3088 5.0040 14 1 6.4755 1.8855 5.3619 15 8 5.3273 3.5707 5.6362 16 6 5.3500 3.5132 7.0655 17 6 4.2201 2.6027 7.5577 18 7 4.3045 1.3182 6.8441 19 6 4.3019 0.1283 7.5217 20 1 4.8328 -0.7225 7.1209 21 6 3.6166 0.0155 8.7236 22 7 4.1383 -0.6733 9.7165 23 14 1.9540 0.8411 8.9319 24 1 0.8902 -0.0463 8.3973 25 1 1.7061 1.0982 10.3734 26 1 1.9440 2.1279 8.1907 27 6 4.3917 1.3600 5.3714 28 1 4.5846 0.3631 4.9753 29 6 3.0710 1.9227 4.8334 30 1 -0.3633 0.4344 -0.9314 31 1 -0.3633 -1.0236 0.0895 32 1 -0.3633 0.5895 0.8418 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8901 35 1 3.1250 4.1701 1.2094 36 1 4.3484 3.0760 1.8619 37 1 4.1774 4.0635 3.3375 38 1 6.4504 3.1509 3.2502 39 1 5.8139 1.5045 3.0302 40 1 6.3086 3.1148 7.3981 41 1 5.2122 4.5153 7.4718 42 1 4.3273 2.4336 8.6292 43 1 3.2575 3.0717 7.3538 44 1 3.6597 -0.7518 10.5564 45 1 2.2746 1.1948 4.9892 46 1 2.8278 2.8464 5.3583 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074237297.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:22 Heat of formation + Delta-G solvation = 47.539357 kcal Electronic energy + Delta-G solvation = -30866.452630 eV Core-core repulsion = 26794.353108 eV Total energy + Delta-G solvation = -4072.099522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.46430 -41.56221 -40.07345 -37.48117 -36.51715 -36.36355 -33.97999 -33.48057 -32.55920 -31.83394 -31.11259 -29.41133 -27.02421 -25.76425 -25.49443 -24.66500 -24.32518 -23.06257 -22.95581 -21.04800 -20.05236 -19.00488 -18.64830 -18.17480 -17.68703 -17.27120 -17.15111 -16.99459 -16.55327 -16.13003 -16.06853 -15.78506 -15.49616 -15.05193 -15.02023 -14.79446 -14.45684 -14.11339 -14.03722 -13.99841 -13.79705 -13.51174 -13.22832 -13.07738 -12.92226 -12.71098 -12.62250 -12.55463 -12.38088 -12.08813 -11.99166 -11.96140 -11.59089 -11.30769 -11.27645 -11.22757 -10.94131 -10.52070 -10.35146 -9.85069 -8.87571 -8.33998 -5.48634 -0.15398 0.94219 1.17499 1.31331 1.43202 1.47559 1.74235 1.83984 2.38613 2.76721 2.89652 3.06674 3.25604 3.32915 3.63318 3.76994 3.84351 3.86418 3.95965 4.03936 4.12384 4.17220 4.20952 4.29678 4.36978 4.39979 4.43885 4.56933 4.58844 4.71920 4.76778 4.78023 4.82856 4.89592 4.92133 4.96770 5.04445 5.07050 5.18576 5.24050 5.31156 5.34594 5.79031 6.06306 6.18047 6.28804 6.78395 6.84225 7.21955 7.53270 7.99674 8.84195 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015485 B = 0.003959 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.769064 B = 7070.914316 C = 8233.368785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.102 3.898 3 N -0.251 5.251 4 N -0.072 5.072 5 N -0.293 5.293 6 C 0.010 3.990 7 C -0.072 4.072 8 C 0.590 3.410 9 O -0.566 6.566 10 N -0.583 5.583 11 C 0.094 3.906 12 C -0.116 4.116 13 C 0.086 3.914 14 H 0.048 0.952 15 O -0.374 6.374 16 C 0.056 3.944 17 C 0.102 3.898 18 N -0.603 5.603 19 C -0.272 4.272 20 H 0.046 0.954 21 C 0.009 3.991 22 N -0.914 5.914 23 Si 0.886 3.114 24 H -0.302 1.302 25 H -0.296 1.296 26 H -0.237 1.237 27 C 0.131 3.869 28 H 0.066 0.934 29 C 0.119 3.881 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.045 0.955 33 H 0.136 0.864 34 H 0.104 0.896 35 H 0.233 0.767 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.084 0.916 40 H 0.045 0.955 41 H 0.121 0.879 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.265 0.735 45 H 0.059 0.941 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.179 9.185 -18.275 20.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.018 4.018 3 N -0.049 5.049 4 N -0.052 5.052 5 N -0.155 5.155 6 C -0.150 4.150 7 C -0.207 4.207 8 C 0.376 3.624 9 O -0.445 6.445 10 N -0.315 5.315 11 C -0.027 4.027 12 C -0.154 4.154 13 C 0.026 3.974 14 H 0.066 0.934 15 O -0.293 6.293 16 C -0.022 4.022 17 C -0.023 4.023 18 N -0.327 5.327 19 C -0.401 4.401 20 H 0.064 0.936 21 C -0.192 4.192 22 N -0.555 5.555 23 Si 0.713 3.287 24 H -0.230 1.230 25 H -0.222 1.222 26 H -0.161 1.161 27 C 0.024 3.976 28 H 0.084 0.916 29 C -0.006 4.006 30 H 0.090 0.910 31 H 0.125 0.875 32 H 0.064 0.936 33 H 0.153 0.847 34 H 0.122 0.878 35 H 0.249 0.751 36 H 0.132 0.868 37 H 0.119 0.881 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.064 0.936 41 H 0.138 0.862 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.372 8.878 -19.538 21.464 hybrid contribution -1.111 -0.911 2.334 2.740 sum -1.482 7.967 -17.205 19.018 Atomic orbital electron populations 1.22055 0.91923 1.05089 1.02537 1.22557 0.97511 0.74651 1.07037 1.48150 1.39256 1.14150 1.03315 1.78202 1.16491 0.98492 1.12047 1.74911 1.16019 1.11187 1.13419 1.24531 1.01637 0.97580 0.91294 1.21889 1.12835 0.95700 0.90259 1.16967 0.81165 0.80952 0.83309 1.90828 1.40442 1.33278 1.79987 1.47898 1.28321 1.49073 1.06234 1.22457 0.84046 0.94642 1.01514 1.21840 0.98844 1.03635 0.91082 1.22208 0.96196 0.84593 0.94381 0.93362 1.87752 1.93382 1.29264 1.18890 1.23064 0.97488 1.00787 0.80872 1.22065 0.97454 0.86204 0.96553 1.44624 1.85848 1.01620 1.00601 1.18518 1.26988 0.91238 1.03306 0.93613 1.25710 1.00193 0.97844 0.95411 1.70211 1.37291 1.45334 1.02688 0.86750 0.84761 0.80730 0.76466 1.23049 1.22243 1.16050 1.21819 0.93811 0.98170 0.83844 0.91553 1.21974 0.99386 1.00783 0.78424 0.90958 0.87522 0.93628 0.84653 0.87767 0.75106 0.86784 0.88110 0.86676 0.89782 0.93627 0.86162 0.92465 0.94449 0.92548 0.92275 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.24 71.98 0.74 -1.87 16 2 C 0.10 1.78 6.62 86.38 0.57 2.35 16 3 N -0.25 -5.65 3.39 -335.43 -1.14 -6.79 16 4 N -0.07 -1.75 13.14 37.02 0.49 -1.27 16 5 N -0.29 -7.01 12.35 -57.50 -0.71 -7.72 16 6 C 0.01 0.19 9.66 84.18 0.81 1.01 16 7 C -0.07 -1.69 6.38 40.41 0.26 -1.43 16 8 C 0.59 16.67 7.42 86.61 0.64 17.31 16 9 O -0.57 -20.07 15.09 -4.09 -0.06 -20.13 16 10 N -0.58 -15.34 2.96 -823.02 -2.44 -17.78 16 11 C 0.09 1.69 5.05 86.34 0.44 2.12 16 12 C -0.12 -2.22 5.82 30.49 0.18 -2.04 16 13 C 0.09 2.43 2.72 30.50 0.08 2.51 16 14 H 0.05 1.50 8.13 -2.39 -0.02 1.48 16 15 O -0.37 -10.55 9.59 -148.98 -1.43 -11.97 16 16 C 0.06 1.68 6.98 72.06 0.50 2.18 16 17 C 0.10 3.96 4.18 86.33 0.36 4.32 16 18 N -0.60 -26.61 2.37 -672.33 -1.60 -28.21 16 19 C -0.27 -14.74 9.85 84.04 0.83 -13.91 16 20 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 21 C 0.01 0.48 4.72 84.86 0.40 0.88 16 22 N -0.91 -54.53 13.97 21.65 0.30 -54.22 16 23 Si 0.89 43.16 27.12 68.60 1.86 45.02 16 24 H -0.30 -15.42 7.11 99.48 0.71 -14.72 16 25 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 26 H -0.24 -10.52 5.07 99.48 0.50 -10.02 16 27 C 0.13 4.74 3.03 44.95 0.14 4.87 16 28 H 0.07 2.62 7.99 -2.39 -0.02 2.60 16 29 C 0.12 4.04 5.63 86.43 0.49 4.53 16 30 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 2.06 7.01 -2.38 -0.02 2.04 16 35 H 0.23 2.82 6.59 -2.92 -0.02 2.80 16 36 H 0.11 1.57 4.42 -2.39 -0.01 1.56 16 37 H 0.10 1.58 7.94 -2.39 -0.02 1.56 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.12 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.06 2.45 6.53 -2.39 -0.02 2.43 16 43 H 0.04 1.44 5.66 -2.39 -0.01 1.43 16 44 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.06 2.41 7.00 -2.38 -0.02 2.40 16 46 H 0.07 2.50 6.56 -2.39 -0.02 2.48 16 Total: -1.00 -71.12 356.89 2.52 -68.61 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.80 Total: 11.63 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 6.43 Total: 22.83 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -5.09 Total: -115.98 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.49 Total: -32.11 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.86 Total: 45.02 kcal Total: -71.12 2.52 -68.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074237297.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.146 kcal (2) G-P(sol) polarization free energy of solvation -71.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds