Wall clock time and date at job start Tue Mar 31 2020 19:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46983 * 2 1 4 4 C 1.34813 * 126.59788 * 125.00195 * 3 2 1 5 5 C 1.36594 * 106.83976 * 179.97438 * 4 3 2 6 6 C 1.47530 * 125.76520 * 179.97438 * 5 4 3 7 7 O 1.21593 * 120.00266 * 6.92402 * 6 5 4 8 8 N 1.34773 * 119.99722 * 186.91397 * 6 5 4 9 9 C 1.46837 * 120.40755 * 356.95019 * 8 6 5 10 10 C 1.53364 * 109.28640 * 127.78726 * 9 8 6 11 11 C 1.52785 * 108.82469 * 53.80014 * 10 9 8 12 12 H 1.09007 * 109.34138 * 57.16273 * 11 10 9 13 13 O 1.42597 * 111.11396 * 177.47140 * 11 10 9 14 14 C 1.43146 * 113.63388 * 183.61732 * 13 11 10 15 15 C 1.53201 * 109.73822 * 298.31409 * 14 13 11 16 16 N 1.47347 * 108.80275 * 51.20962 * 15 14 13 17 17 C 1.36936 * 121.30784 * 129.73517 * 16 15 14 18 18 H 1.08004 * 120.00116 * 214.83195 * 17 16 15 19 19 C 1.38816 * 120.00027 * 34.82977 * 17 16 15 20 20 N 1.31616 * 119.99480 * 357.18368 * 19 17 16 21 21 Si 1.86793 * 120.00066 * 177.17941 * 19 17 16 22 22 H 1.48504 * 109.47136 * 90.00536 * 21 19 17 23 23 H 1.48501 * 109.47086 * 209.99753 * 21 19 17 24 24 H 1.48499 * 109.47304 * 330.00074 * 21 19 17 25 25 C 1.46877 * 117.39015 * 309.75974 * 16 15 14 26 26 H 1.08993 * 110.20301 * 292.03216 * 25 16 15 27 27 C 1.47146 * 120.41570 * 176.89506 * 8 6 5 28 28 N 1.34397 * 108.46127 * 0.23995 * 5 4 3 29 29 N 1.28757 * 109.52011 * 359.58995 * 28 5 4 30 30 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47346 * 300.00017 * 1 2 3 32 32 H 1.09002 * 109.47139 * 59.99989 * 1 2 3 33 33 H 1.09006 * 109.47066 * 240.00090 * 2 1 3 34 34 H 1.08996 * 109.47526 * 120.00172 * 2 1 3 35 35 H 1.08004 * 126.57597 * 359.97438 * 4 3 2 36 36 H 1.08998 * 109.51018 * 7.82695 * 9 8 6 37 37 H 1.09007 * 109.50411 * 247.73373 * 9 8 6 38 38 H 1.09001 * 109.58204 * 173.61077 * 10 9 8 39 39 H 1.09004 * 109.57873 * 293.99927 * 10 9 8 40 40 H 1.08999 * 109.42828 * 178.23357 * 14 13 11 41 41 H 1.08995 * 109.38307 * 58.36383 * 14 13 11 42 42 H 1.09003 * 109.58497 * 291.41360 * 15 14 13 43 43 H 1.08998 * 109.58129 * 171.00659 * 15 14 13 44 44 H 0.97004 * 119.99677 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.68687 * 113.53579 * 27 8 6 46 46 H 1.08997 * 109.73110 * 352.88993 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8715 1.9321 0.8866 5 6 3.0507 3.2322 0.5080 6 6 3.9075 4.2193 1.1923 7 8 4.6269 3.8689 2.1078 8 7 3.8929 5.5093 0.8024 9 6 3.0786 5.9299 -0.3448 10 6 2.1931 7.1119 0.0687 11 6 3.0777 8.2055 0.6651 12 1 3.8355 8.4942 -0.0633 13 8 2.3088 9.3547 1.0140 14 6 3.0965 10.4454 1.5029 15 6 3.8254 10.0243 2.7829 16 7 4.5335 8.7568 2.5311 17 6 5.8566 8.6055 2.8497 18 1 6.4960 7.9976 2.2267 19 6 6.3762 9.2334 3.9734 20 7 5.6109 10.0187 4.7013 21 14 8.1615 8.9638 4.4523 22 1 9.0110 9.9881 3.7931 23 1 8.3014 9.0790 5.9263 24 1 8.5914 7.6103 4.0186 25 6 3.7645 7.6622 1.9246 26 1 3.0124 7.2979 2.6242 27 6 4.6918 6.5140 1.5218 28 7 2.3101 3.4618 -0.5897 29 7 1.6886 2.3844 -0.9225 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.3261 1.4398 1.7336 36 1 2.4503 5.1002 -0.6689 37 1 3.7318 6.2332 -1.1631 38 1 1.6710 7.5006 -0.8056 39 1 1.4680 6.7823 0.8128 40 1 2.4470 11.2939 1.7180 41 1 3.8277 10.7310 0.7467 42 1 3.1021 9.8853 3.5864 43 1 4.5437 10.7943 3.0644 44 1 5.9740 10.4578 5.4864 45 1 5.4815 6.8898 0.8711 46 1 5.1309 6.0657 2.4130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074372162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:31 Heat of formation + Delta-G solvation = 67.766626 kcal Electronic energy + Delta-G solvation = -30093.594792 eV Core-core repulsion = 26022.372390 eV Total energy + Delta-G solvation = -4071.222402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44092 -39.82189 -38.35885 -36.04884 -35.68419 -34.59705 -31.87272 -31.60891 -31.29904 -30.56491 -29.53832 -27.05391 -25.41747 -25.05881 -23.77547 -23.22873 -22.02147 -21.83407 -21.06614 -19.71408 -19.28463 -17.59354 -16.75403 -16.59108 -16.38495 -15.76605 -15.32499 -15.30979 -15.00509 -14.86349 -14.62297 -14.33312 -13.82247 -13.68804 -13.58961 -13.20583 -13.01359 -12.93098 -12.83799 -12.71351 -12.47571 -12.27591 -11.93801 -11.76619 -11.20036 -11.17697 -10.98265 -10.80305 -10.66509 -10.58448 -10.28471 -10.15639 -10.09933 -10.02762 -9.68475 -9.48125 -9.42318 -8.85605 -8.48724 -8.23453 -6.57342 -5.80869 -3.34731 0.95604 1.62406 1.76079 3.15190 3.37869 3.40699 3.45126 3.48061 3.93011 4.02543 4.31390 4.39468 4.47288 4.54535 4.59263 4.78883 4.95091 4.99519 5.14616 5.22698 5.31895 5.38073 5.43260 5.55631 5.60052 5.63175 5.81873 5.89089 5.99448 6.08227 6.11088 6.22653 6.27082 6.36117 6.42665 6.47942 6.59810 6.74410 6.83920 6.98545 7.25601 7.61086 7.64740 7.76325 7.82079 8.01648 8.35568 8.44060 9.17033 9.76076 10.38134 11.25808 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.003287 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.643621 B = 8515.231656 C = 9799.416218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.360 5.360 4 C 0.091 3.909 5 C -0.088 4.088 6 C 0.598 3.402 7 O -0.538 6.538 8 N -0.592 5.592 9 C 0.074 3.926 10 C -0.120 4.120 11 C 0.076 3.924 12 H 0.050 0.950 13 O -0.391 6.391 14 C 0.037 3.963 15 C 0.142 3.858 16 N -0.589 5.589 17 C -0.258 4.258 18 H 0.069 0.931 19 C 0.013 3.987 20 N -0.902 5.902 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.276 1.276 25 C 0.139 3.861 26 H 0.036 0.964 27 C 0.124 3.876 28 N -0.205 5.205 29 N -0.067 5.067 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.205 0.795 36 H 0.143 0.857 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.025 0.975 43 H 0.102 0.898 44 H 0.256 0.744 45 H 0.073 0.927 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -17.745 -10.672 22.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.146 5.146 4 C -0.065 4.065 5 C -0.227 4.227 6 C 0.383 3.617 7 O -0.415 6.415 8 N -0.323 5.323 9 C -0.050 4.050 10 C -0.159 4.159 11 C 0.016 3.984 12 H 0.068 0.932 13 O -0.310 6.310 14 C -0.041 4.041 15 C 0.016 3.984 16 N -0.314 5.314 17 C -0.388 4.388 18 H 0.087 0.913 19 C -0.186 4.186 20 N -0.546 5.546 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.201 1.201 25 C 0.031 3.969 26 H 0.054 0.946 27 C 0.003 3.997 28 N -0.078 5.078 29 N -0.047 5.047 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.222 0.778 36 H 0.160 0.840 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.043 0.957 43 H 0.120 0.880 44 H 0.066 0.934 45 H 0.092 0.908 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.103 -17.548 -11.279 23.178 hybrid contribution 1.671 -0.255 1.291 2.127 sum -8.433 -17.803 -9.988 22.086 Atomic orbital electron populations 1.22093 0.92712 1.03668 1.04152 1.22043 0.96894 0.76217 1.05132 1.50562 1.31795 1.12278 1.19986 1.23382 0.93110 0.93968 0.96028 1.21587 1.07113 0.95083 0.98930 1.16808 0.81153 0.81449 0.82272 1.90818 1.41552 1.79111 1.30027 1.48071 1.45777 1.07002 1.31461 1.22799 0.94770 1.00078 0.87352 1.21820 0.98308 0.94425 1.01307 1.22488 0.92915 0.86421 0.96577 0.93161 1.87738 1.34717 1.23720 1.84828 1.23377 0.94479 0.88231 0.98015 1.21546 0.95391 0.89986 0.91455 1.43940 1.07491 1.06980 1.72948 1.19083 0.84497 1.30182 1.04996 0.91321 1.25325 0.98337 0.99317 0.95612 1.69909 1.35121 1.31876 1.17692 0.86289 0.84474 0.78351 0.77702 1.21378 1.21493 1.20090 1.21293 0.93297 0.89141 0.93184 0.94598 1.21825 0.92748 0.87459 0.97689 1.74116 1.05752 1.16905 1.11022 1.81960 1.20635 0.90355 1.11710 0.89919 0.91600 0.90672 0.88344 0.87641 0.77800 0.84045 0.91701 0.90420 0.91254 0.90274 0.94292 0.95661 0.87990 0.93415 0.90844 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.67 10.12 37.16 0.38 -0.29 16 2 C 0.12 0.48 7.26 -4.04 -0.03 0.45 16 3 N -0.36 -3.17 3.69 -61.06 -0.23 -3.39 16 4 C 0.09 0.93 11.28 -16.84 -0.19 0.74 16 5 C -0.09 -1.22 6.76 -83.55 -0.57 -1.79 16 6 C 0.60 10.34 7.69 -12.47 -0.10 10.24 16 7 O -0.54 -10.74 16.28 5.28 0.09 -10.65 16 8 N -0.59 -10.41 2.98 -173.91 -0.52 -10.93 16 9 C 0.07 1.11 6.26 -3.67 -0.02 1.09 16 10 C -0.12 -1.92 5.82 -26.65 -0.16 -2.08 16 11 C 0.08 1.48 2.48 -26.63 -0.07 1.41 16 12 H 0.05 1.00 8.13 -51.92 -0.42 0.58 16 13 O -0.39 -8.18 10.49 -35.23 -0.37 -8.55 16 14 C 0.04 0.76 6.95 37.26 0.26 1.02 16 15 C 0.14 3.48 5.37 -3.48 -0.02 3.46 16 16 N -0.59 -15.02 3.04 -164.35 -0.50 -15.52 16 17 C -0.26 -7.00 8.71 -15.06 -0.13 -7.13 16 18 H 0.07 1.81 6.43 -52.48 -0.34 1.48 16 19 C 0.01 0.37 5.31 -17.43 -0.09 0.28 16 20 N -0.90 -25.98 10.75 55.49 0.60 -25.38 16 21 Si 0.90 21.76 29.55 -169.99 -5.02 16.73 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 C 0.14 3.09 3.03 -67.52 -0.20 2.88 16 26 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 27 C 0.12 2.56 4.56 -3.70 -0.02 2.54 16 28 N -0.21 -2.79 8.63 32.85 0.28 -2.50 16 29 N -0.07 -0.80 13.65 60.35 0.82 0.02 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.11 0.16 8.08 -51.93 -0.42 -0.26 16 35 H 0.21 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.14 2.02 3.62 -131.49 -0.48 1.55 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 2.72 6.20 -51.93 -0.32 2.39 16 44 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.07 1.51 7.34 -51.93 -0.38 1.13 16 46 H 0.10 2.38 6.84 -51.93 -0.36 2.02 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -33.70 364.56 -7.23 -40.93 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.92 Total: 0.92 kcal Atomic # 6 Polarization: 13.79 SS G_CDS: -0.95 Total: 12.83 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.46 Total: -57.71 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.28 Total: -19.20 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.70 -7.23 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074372162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.692 kcal (2) G-P(sol) polarization free energy of solvation -33.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds