Wall clock time and date at job start Tue Mar 31 2020 19:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46503 * 109.46983 * 2 1 4 4 C 1.34813 * 126.59788 * 125.00195 * 3 2 1 5 5 C 1.36594 * 106.83976 * 179.97438 * 4 3 2 6 6 C 1.47530 * 125.76520 * 179.97438 * 5 4 3 7 7 O 1.21593 * 120.00266 * 6.92402 * 6 5 4 8 8 N 1.34773 * 119.99722 * 186.91397 * 6 5 4 9 9 C 1.46837 * 120.40755 * 356.95019 * 8 6 5 10 10 C 1.53364 * 109.28640 * 127.78726 * 9 8 6 11 11 C 1.52785 * 108.82469 * 53.80014 * 10 9 8 12 12 H 1.09007 * 109.34138 * 57.16273 * 11 10 9 13 13 O 1.42597 * 111.11396 * 177.47140 * 11 10 9 14 14 C 1.43146 * 113.63388 * 183.61732 * 13 11 10 15 15 C 1.53201 * 109.73822 * 298.31409 * 14 13 11 16 16 N 1.47347 * 108.80275 * 51.20962 * 15 14 13 17 17 C 1.36936 * 121.30784 * 129.73517 * 16 15 14 18 18 H 1.08004 * 120.00116 * 214.83195 * 17 16 15 19 19 C 1.38816 * 120.00027 * 34.82977 * 17 16 15 20 20 N 1.31616 * 119.99480 * 357.18368 * 19 17 16 21 21 Si 1.86793 * 120.00066 * 177.17941 * 19 17 16 22 22 H 1.48504 * 109.47136 * 90.00536 * 21 19 17 23 23 H 1.48501 * 109.47086 * 209.99753 * 21 19 17 24 24 H 1.48499 * 109.47304 * 330.00074 * 21 19 17 25 25 C 1.46877 * 117.39015 * 309.75974 * 16 15 14 26 26 H 1.08993 * 110.20301 * 292.03216 * 25 16 15 27 27 C 1.47146 * 120.41570 * 176.89506 * 8 6 5 28 28 N 1.34397 * 108.46127 * 0.23995 * 5 4 3 29 29 N 1.28757 * 109.52011 * 359.58995 * 28 5 4 30 30 H 1.09001 * 109.46695 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47346 * 300.00017 * 1 2 3 32 32 H 1.09002 * 109.47139 * 59.99989 * 1 2 3 33 33 H 1.09006 * 109.47066 * 240.00090 * 2 1 3 34 34 H 1.08996 * 109.47526 * 120.00172 * 2 1 3 35 35 H 1.08004 * 126.57597 * 359.97438 * 4 3 2 36 36 H 1.08998 * 109.51018 * 7.82695 * 9 8 6 37 37 H 1.09007 * 109.50411 * 247.73373 * 9 8 6 38 38 H 1.09001 * 109.58204 * 173.61077 * 10 9 8 39 39 H 1.09004 * 109.57873 * 293.99927 * 10 9 8 40 40 H 1.08999 * 109.42828 * 178.23357 * 14 13 11 41 41 H 1.08995 * 109.38307 * 58.36383 * 14 13 11 42 42 H 1.09003 * 109.58497 * 291.41360 * 15 14 13 43 43 H 1.08998 * 109.58129 * 171.00659 * 15 14 13 44 44 H 0.97004 * 119.99677 * 180.02562 * 20 19 17 45 45 H 1.09000 * 109.68687 * 113.53579 * 27 8 6 46 46 H 1.08997 * 109.73110 * 352.88993 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8715 1.9321 0.8866 5 6 3.0507 3.2322 0.5080 6 6 3.9075 4.2193 1.1923 7 8 4.6269 3.8689 2.1078 8 7 3.8929 5.5093 0.8024 9 6 3.0786 5.9299 -0.3448 10 6 2.1931 7.1119 0.0687 11 6 3.0777 8.2055 0.6651 12 1 3.8355 8.4942 -0.0633 13 8 2.3088 9.3547 1.0140 14 6 3.0965 10.4454 1.5029 15 6 3.8254 10.0243 2.7829 16 7 4.5335 8.7568 2.5311 17 6 5.8566 8.6055 2.8497 18 1 6.4960 7.9976 2.2267 19 6 6.3762 9.2334 3.9734 20 7 5.6109 10.0187 4.7013 21 14 8.1615 8.9638 4.4523 22 1 9.0110 9.9881 3.7931 23 1 8.3014 9.0790 5.9263 24 1 8.5914 7.6103 4.0186 25 6 3.7645 7.6622 1.9246 26 1 3.0124 7.2979 2.6242 27 6 4.6918 6.5140 1.5218 28 7 2.3101 3.4618 -0.5897 29 7 1.6886 2.3844 -0.9225 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.3261 1.4398 1.7336 36 1 2.4503 5.1002 -0.6689 37 1 3.7318 6.2332 -1.1631 38 1 1.6710 7.5006 -0.8056 39 1 1.4680 6.7823 0.8128 40 1 2.4470 11.2939 1.7180 41 1 3.8277 10.7310 0.7467 42 1 3.1021 9.8853 3.5864 43 1 4.5437 10.7943 3.0644 44 1 5.9740 10.4578 5.4864 45 1 5.4815 6.8898 0.8711 46 1 5.1309 6.0657 2.4130 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074372162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:30 Heat of formation + Delta-G solvation = 43.761520 kcal Electronic energy + Delta-G solvation = -30094.635732 eV Core-core repulsion = 26022.372390 eV Total energy + Delta-G solvation = -4072.263341 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.33737 -41.31141 -39.92392 -37.48259 -36.56683 -36.32140 -33.55033 -33.01277 -32.35913 -31.75708 -30.92541 -28.89902 -26.98692 -25.80653 -25.32526 -24.53763 -23.43388 -22.82515 -22.44262 -21.44937 -20.54584 -18.78296 -18.50779 -17.77970 -17.29305 -17.06234 -16.98249 -16.81809 -16.42609 -16.14455 -15.85321 -15.56879 -15.34266 -15.09844 -15.05588 -14.66892 -14.59488 -14.18085 -13.91519 -13.76997 -13.43258 -13.35145 -13.05080 -12.97710 -12.89406 -12.79525 -12.49259 -12.36110 -12.23214 -12.11683 -11.99169 -11.87676 -11.51731 -11.33025 -11.27828 -10.88934 -10.65201 -10.55626 -10.38425 -9.69789 -8.63241 -7.91302 -5.48870 0.14322 0.54730 1.10427 1.44283 1.47095 1.55925 1.82379 2.16612 2.45743 2.80076 3.09316 3.25417 3.35200 3.47802 3.68777 3.85252 3.93928 4.00179 4.02944 4.12338 4.18226 4.23701 4.29413 4.30838 4.40784 4.44209 4.54598 4.57751 4.63420 4.76236 4.77452 4.87656 4.91195 4.99246 5.07618 5.15668 5.20317 5.27698 5.31944 5.47123 5.56462 5.61768 5.63652 6.28435 6.29754 6.38580 6.81434 7.05925 7.07700 7.70653 8.30348 9.13523 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016110 B = 0.003287 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.643621 B = 8515.231656 C = 9799.416218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.106 3.894 3 N -0.344 5.344 4 C 0.113 3.887 5 C -0.118 4.118 6 C 0.597 3.403 7 O -0.574 6.574 8 N -0.596 5.596 9 C 0.077 3.923 10 C -0.110 4.110 11 C 0.081 3.919 12 H 0.054 0.946 13 O -0.394 6.394 14 C 0.048 3.952 15 C 0.146 3.854 16 N -0.606 5.606 17 C -0.264 4.264 18 H 0.073 0.927 19 C -0.040 4.040 20 N -0.933 5.933 21 Si 0.966 3.034 22 H -0.278 1.278 23 H -0.293 1.293 24 H -0.271 1.271 25 C 0.138 3.862 26 H 0.007 0.993 27 C 0.140 3.860 28 N -0.220 5.220 29 N -0.078 5.078 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.118 0.882 34 H 0.140 0.860 35 H 0.235 0.765 36 H 0.158 0.842 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.060 0.940 40 H 0.108 0.892 41 H 0.047 0.953 42 H -0.005 1.005 43 H 0.079 0.921 44 H 0.252 0.748 45 H 0.072 0.928 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.137 -20.074 -12.537 25.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.012 4.012 3 N -0.129 5.129 4 C -0.045 4.045 5 C -0.258 4.258 6 C 0.384 3.616 7 O -0.453 6.453 8 N -0.327 5.327 9 C -0.045 4.045 10 C -0.149 4.149 11 C 0.021 3.979 12 H 0.072 0.928 13 O -0.313 6.313 14 C -0.029 4.029 15 C 0.021 3.979 16 N -0.331 5.331 17 C -0.394 4.394 18 H 0.090 0.910 19 C -0.236 4.236 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.196 1.196 25 C 0.030 3.970 26 H 0.025 0.975 27 C 0.017 3.983 28 N -0.093 5.093 29 N -0.058 5.058 30 H 0.128 0.872 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.251 0.749 36 H 0.174 0.826 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.013 0.987 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.748 -19.911 -13.202 26.197 hybrid contribution 1.767 0.305 1.876 2.595 sum -8.981 -19.607 -11.326 24.359 Atomic orbital electron populations 1.22091 0.92590 1.04982 1.02713 1.22614 0.96983 0.73795 1.07826 1.50911 1.30429 1.13232 1.18376 1.23777 0.91960 0.92683 0.96087 1.21210 1.08557 0.95759 1.00227 1.17244 0.80906 0.81633 0.81808 1.90785 1.43156 1.79721 1.31665 1.48108 1.45876 1.06809 1.31926 1.22994 0.94769 1.00209 0.86568 1.21821 0.97749 0.93400 1.01938 1.22530 0.93575 0.86837 0.94927 0.92827 1.87744 1.35008 1.24034 1.84553 1.23243 0.94927 0.88906 0.95840 1.21380 0.94347 0.89335 0.92861 1.44203 1.07463 1.08242 1.73218 1.19373 0.85486 1.29475 1.05038 0.90985 1.26062 1.02266 0.99468 0.95793 1.70081 1.36724 1.32901 1.18053 0.85293 0.80067 0.78403 0.76867 1.20474 1.21940 1.19627 1.21379 0.92810 0.89075 0.93714 0.97532 1.21371 0.92727 0.87433 0.96755 1.73947 1.06129 1.18048 1.11137 1.81872 1.20591 0.90721 1.12600 0.87248 0.92758 0.92348 0.86428 0.84208 0.74861 0.82583 0.90226 0.87487 0.92083 0.87408 0.93440 0.98650 0.90306 0.93836 0.90933 0.91096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.84 10.12 71.98 0.73 -0.11 16 2 C 0.11 0.46 7.26 86.38 0.63 1.09 16 3 N -0.34 -5.06 3.69 -347.09 -1.28 -6.34 16 4 C 0.11 2.02 11.28 83.85 0.95 2.96 16 5 C -0.12 -3.14 6.76 40.82 0.28 -2.87 16 6 C 0.60 20.72 7.69 86.69 0.67 21.39 16 7 O -0.57 -23.37 16.28 -4.01 -0.07 -23.44 16 8 N -0.60 -21.09 2.98 -822.39 -2.45 -23.55 16 9 C 0.08 2.22 6.26 86.44 0.54 2.76 16 10 C -0.11 -3.38 5.82 30.64 0.18 -3.20 16 11 C 0.08 3.11 2.48 30.66 0.08 3.19 16 12 H 0.05 2.06 8.13 -2.38 -0.02 2.04 16 13 O -0.39 -16.12 10.49 -148.98 -1.56 -17.68 16 14 C 0.05 1.98 6.95 72.05 0.50 2.48 16 15 C 0.15 7.44 5.37 86.28 0.46 7.90 16 16 N -0.61 -31.97 3.04 -673.89 -2.05 -34.02 16 17 C -0.26 -14.73 8.71 84.03 0.73 -13.99 16 18 H 0.07 3.89 6.43 -2.91 -0.02 3.88 16 19 C -0.04 -2.26 5.31 84.86 0.45 -1.81 16 20 N -0.93 -55.61 10.75 21.65 0.23 -55.38 16 21 Si 0.97 45.71 29.55 68.60 2.03 47.73 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 25 C 0.14 6.31 3.03 45.05 0.14 6.45 16 26 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 27 C 0.14 5.95 4.56 86.25 0.39 6.34 16 28 N -0.22 -5.64 8.63 -49.99 -0.43 -6.07 16 29 N -0.08 -1.70 13.65 37.02 0.51 -1.20 16 30 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 31 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 34 H 0.14 -0.26 8.08 -2.39 -0.02 -0.28 16 35 H 0.24 2.62 8.06 -2.91 -0.02 2.60 16 36 H 0.16 4.23 3.62 -105.34 -0.38 3.84 16 37 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 38 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.11 3.76 8.14 -2.39 -0.02 3.74 16 41 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 43 H 0.08 4.37 6.20 -2.39 -0.01 4.35 16 44 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.07 3.05 7.34 -2.39 -0.02 3.03 16 46 H 0.07 3.45 6.84 -2.39 -0.02 3.43 16 Total: -1.00 -76.63 364.56 2.26 -74.37 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.63 Total: 12.99 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 6.72 Total: 32.58 kcal Atomic # 7 Polarization: -121.07 SS G_CDS: -5.48 Total: -126.55 kcal Atomic # 8 Polarization: -39.49 SS G_CDS: -1.63 Total: -41.12 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -76.63 2.26 -74.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074372162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.129 kcal (2) G-P(sol) polarization free energy of solvation -76.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds