Wall clock time and date at job start Tue Mar 31 2020 19:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47106 * 2 1 4 4 C 1.34818 * 126.59334 * 125.27621 * 3 2 1 5 5 C 1.36600 * 106.83569 * 180.11099 * 4 3 2 6 6 C 1.47522 * 125.76630 * 179.89698 * 5 4 3 7 7 O 1.21600 * 119.99938 * 351.70037 * 6 5 4 8 8 N 1.34777 * 120.00179 * 171.69506 * 6 5 4 9 9 C 1.46981 * 120.72364 * 173.21295 * 8 6 5 10 10 C 1.53161 * 108.44595 * 125.48621 * 9 8 6 11 11 C 1.52505 * 109.79668 * 54.51733 * 10 9 8 12 12 H 1.09003 * 108.93550 * 180.34244 * 11 10 9 13 13 O 1.42695 * 110.62891 * 61.30076 * 11 10 9 14 14 C 1.43072 * 113.87175 * 174.64176 * 13 11 10 15 15 C 1.52803 * 109.52074 * 61.51405 * 14 13 11 16 16 N 1.47172 * 108.92685 * 308.66014 * 15 14 13 17 17 C 1.36940 * 121.22043 * 230.90535 * 16 15 14 18 18 H 1.07999 * 119.99573 * 153.49226 * 17 16 15 19 19 C 1.38806 * 120.00210 * 333.48199 * 17 16 15 20 20 N 1.31613 * 120.00161 * 339.75007 * 19 17 16 21 21 Si 1.86801 * 119.99730 * 159.74324 * 19 17 16 22 22 H 1.48506 * 109.47067 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47232 * 300.00382 * 21 19 17 24 24 H 1.48500 * 109.47318 * 60.00455 * 21 19 17 25 25 C 1.47589 * 117.55368 * 50.63216 * 16 15 14 26 26 H 1.08995 * 110.31602 * 186.93418 * 25 16 15 27 27 C 1.46800 * 120.71802 * 353.24115 * 8 6 5 28 28 N 1.34398 * 108.46305 * 359.62988 * 5 4 3 29 29 N 1.28768 * 109.52004 * 0.23029 * 28 5 4 30 30 H 1.08999 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47239 * 299.99713 * 1 2 3 32 32 H 1.09008 * 109.46954 * 59.99947 * 1 2 3 33 33 H 1.09006 * 109.47079 * 240.00410 * 2 1 3 34 34 H 1.09000 * 109.47559 * 120.00235 * 2 1 3 35 35 H 1.07993 * 126.58290 * 359.96721 * 4 3 2 36 36 H 1.09001 * 109.64153 * 245.17150 * 9 8 6 37 37 H 1.08993 * 109.64122 * 5.80401 * 9 8 6 38 38 H 1.08990 * 109.41708 * 174.61574 * 10 9 8 39 39 H 1.08997 * 109.41423 * 294.42321 * 10 9 8 40 40 H 1.08996 * 109.47716 * 181.64673 * 14 13 11 41 41 H 1.09002 * 109.47451 * 301.65875 * 14 13 11 42 42 H 1.09003 * 109.53769 * 188.79682 * 15 14 13 43 43 H 1.09007 * 109.43975 * 68.46439 * 15 14 13 44 44 H 0.97005 * 120.00481 * 353.40105 * 20 19 17 45 45 H 1.09002 * 109.52204 * 114.36687 * 27 8 6 46 46 H 1.09001 * 109.57272 * 354.20961 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8756 1.9306 0.8837 5 6 3.0507 3.2322 0.5082 6 6 3.9084 4.2189 1.1917 7 8 4.4165 3.9448 2.2619 8 7 4.1290 5.4239 0.6299 9 6 4.8561 6.4714 1.3609 10 6 6.0293 6.9410 0.4954 11 6 5.5194 7.3724 -0.8757 12 1 6.3653 7.6977 -1.4814 13 8 4.6079 8.4634 -0.7527 14 6 4.1789 9.0035 -2.0062 15 6 3.4422 7.9263 -2.8010 16 7 4.2790 6.7168 -2.8551 17 6 4.5480 6.0924 -4.0438 18 1 5.4510 5.5105 -4.1558 19 6 3.6602 6.2071 -5.1046 20 7 2.4103 6.5542 -4.8821 21 14 4.2395 5.8690 -6.8480 22 1 3.1085 6.0599 -7.7913 23 1 5.3371 6.8069 -7.1956 24 1 4.7336 4.4718 -6.9433 25 6 4.8225 6.2052 -1.5819 26 1 5.5180 5.3871 -1.7689 27 6 3.6476 5.7190 -0.7252 28 7 2.3142 3.4604 -0.5926 29 7 1.6885 2.3844 -0.9224 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3339 1.4370 1.7279 36 1 4.1888 7.3101 1.5597 37 1 5.2328 6.0681 2.3008 38 1 6.5226 7.7835 0.9799 39 1 6.7415 6.1246 0.3766 40 1 3.5114 9.8468 -1.8292 41 1 5.0470 9.3399 -2.5731 42 1 3.2527 8.2853 -3.8127 43 1 2.4971 7.6954 -2.3095 44 1 2.0844 6.6367 -3.9722 45 1 2.8842 6.4957 -0.6795 46 1 3.2237 4.8170 -1.1666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074372163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:34 Heat of formation + Delta-G solvation = 66.862729 kcal Electronic energy + Delta-G solvation = -30782.952003 eV Core-core repulsion = 26711.690405 eV Total energy + Delta-G solvation = -4071.261597 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.17671 -39.92932 -38.50386 -35.73441 -35.49164 -34.87865 -32.07182 -31.40835 -31.35779 -30.27835 -29.30179 -27.21797 -25.30654 -24.82785 -23.66488 -23.01860 -22.70742 -21.76371 -21.10639 -19.61676 -18.55827 -17.58579 -17.32784 -16.42344 -16.15000 -15.82730 -15.57909 -15.18168 -14.91669 -14.72743 -14.58616 -14.26133 -13.91031 -13.77517 -13.53961 -13.51591 -13.07710 -12.64840 -12.61649 -12.50377 -12.29999 -12.09797 -12.02308 -11.70578 -11.49390 -11.31912 -10.89884 -10.77385 -10.60854 -10.42571 -10.28217 -10.10867 -10.08236 -9.92431 -9.55269 -9.37289 -9.21931 -9.01486 -8.44603 -8.21491 -6.87780 -6.01685 -3.25592 1.18167 1.86140 2.01235 3.23555 3.47213 3.49597 3.51879 3.70243 4.12242 4.27286 4.31790 4.50132 4.53052 4.68053 4.76250 4.94685 5.10139 5.16950 5.19892 5.23569 5.33086 5.40916 5.46133 5.56865 5.61861 5.71688 5.77936 5.79440 5.95824 5.98838 6.05494 6.08235 6.21206 6.28220 6.30396 6.34954 6.40507 6.66254 6.76685 6.92327 7.05039 7.11196 7.68785 7.82502 7.92890 8.07687 8.39490 8.54387 9.05287 9.80975 10.22813 11.24221 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.005022 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.601867 B = 5573.631950 C = 7908.427881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.364 5.364 4 C 0.086 3.914 5 C -0.098 4.098 6 C 0.603 3.397 7 O -0.558 6.558 8 N -0.588 5.588 9 C 0.118 3.882 10 C -0.121 4.121 11 C 0.080 3.920 12 H 0.051 0.949 13 O -0.385 6.385 14 C 0.045 3.955 15 C 0.114 3.886 16 N -0.590 5.590 17 C -0.344 4.344 18 H 0.058 0.942 19 C -0.022 4.022 20 N -0.918 5.918 21 Si 1.067 2.933 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.137 3.863 26 H 0.073 0.927 27 C 0.075 3.925 28 N -0.188 5.188 29 N -0.059 5.059 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.202 0.798 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.043 0.957 42 H 0.091 0.909 43 H 0.028 0.972 44 H 0.272 0.728 45 H 0.066 0.934 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 -9.129 12.457 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.002 4.002 3 N -0.150 5.150 4 C -0.071 4.071 5 C -0.237 4.237 6 C 0.389 3.611 7 O -0.437 6.437 8 N -0.319 5.319 9 C -0.004 4.004 10 C -0.159 4.159 11 C 0.020 3.980 12 H 0.069 0.931 13 O -0.304 6.304 14 C -0.033 4.033 15 C -0.012 4.012 16 N -0.314 5.314 17 C -0.473 4.473 18 H 0.075 0.925 19 C -0.224 4.224 20 N -0.559 5.559 21 Si 0.897 3.103 22 H -0.210 1.210 23 H -0.221 1.221 24 H -0.221 1.221 25 C 0.029 3.971 26 H 0.091 0.909 27 C -0.050 4.050 28 N -0.061 5.061 29 N -0.038 5.038 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.219 0.781 36 H 0.093 0.907 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.046 0.954 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.610 -8.889 10.264 13.592 hybrid contribution 1.047 -0.533 2.062 2.373 sum 0.436 -9.422 12.326 15.521 Atomic orbital electron populations 1.22085 0.92810 1.03505 1.04175 1.21997 0.96854 0.76474 1.04918 1.50671 1.31696 1.12359 1.20262 1.23273 0.93618 0.94034 0.96160 1.21494 1.07893 0.95040 0.99240 1.16830 0.79521 0.80898 0.83860 1.90736 1.52220 1.78369 1.22341 1.48070 1.54524 1.11917 1.17376 1.21548 0.93647 0.90012 0.95235 1.21782 0.97707 1.01180 0.95276 1.22250 0.91721 0.88631 0.95376 0.93100 1.87735 1.64201 1.48748 1.29763 1.23093 0.98378 0.96558 0.85244 1.21602 0.92567 0.86708 1.00295 1.44289 1.59725 1.25955 1.01385 1.19969 1.04449 1.32730 0.90189 0.92451 1.25831 0.93399 0.99374 1.03784 1.70761 1.13481 1.47131 1.24480 0.83495 0.75096 0.75877 0.75840 1.21003 1.22087 1.22088 1.21589 0.94460 0.94181 0.86901 0.90875 1.23247 0.98279 1.04472 0.78968 1.74672 1.04746 1.17339 1.09339 1.82131 1.19786 0.90449 1.11461 0.90030 0.91781 0.90516 0.88371 0.87906 0.78148 0.90723 0.89312 0.90376 0.90458 0.89932 0.93863 0.89126 0.95439 0.91620 0.91557 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 10.12 37.16 0.38 -0.75 16 2 C 0.12 0.82 7.26 -4.04 -0.03 0.79 16 3 N -0.36 -4.44 3.69 -61.06 -0.23 -4.67 16 4 C 0.09 1.08 11.28 -16.83 -0.19 0.89 16 5 C -0.10 -1.64 6.69 -83.55 -0.56 -2.20 16 6 C 0.60 10.75 7.68 -12.48 -0.10 10.65 16 7 O -0.56 -10.28 16.31 5.28 0.09 -10.19 16 8 N -0.59 -10.60 2.96 -174.00 -0.52 -11.11 16 9 C 0.12 1.86 6.27 -3.70 -0.02 1.83 16 10 C -0.12 -1.83 5.82 -26.90 -0.16 -1.99 16 11 C 0.08 1.49 2.73 -26.88 -0.07 1.41 16 12 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 13 O -0.39 -7.43 9.59 -35.23 -0.34 -7.77 16 14 C 0.05 0.88 6.96 37.06 0.26 1.14 16 15 C 0.11 2.66 4.23 -3.78 -0.02 2.64 16 16 N -0.59 -14.63 2.60 -164.13 -0.43 -15.05 16 17 C -0.34 -9.50 9.64 -15.06 -0.15 -9.65 16 18 H 0.06 1.60 7.91 -52.49 -0.42 1.18 16 19 C -0.02 -0.61 4.86 -17.44 -0.08 -0.69 16 20 N -0.92 -27.22 12.34 55.49 0.69 -26.53 16 21 Si 1.07 25.21 29.96 -169.99 -5.09 20.11 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 25 C 0.14 2.94 3.03 -67.07 -0.20 2.74 16 26 H 0.07 1.63 7.99 -51.93 -0.42 1.22 16 27 C 0.07 1.54 5.30 -3.72 -0.02 1.52 16 28 N -0.19 -3.58 8.80 32.85 0.29 -3.29 16 29 N -0.06 -1.00 13.65 60.35 0.82 -0.18 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.10 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.20 1.73 8.06 -52.49 -0.42 1.30 16 36 H 0.07 1.18 7.95 -51.93 -0.41 0.77 16 37 H 0.09 1.32 7.01 -51.93 -0.36 0.96 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.04 0.84 8.13 -51.93 -0.42 0.42 16 42 H 0.09 2.33 6.26 -51.93 -0.33 2.01 16 43 H 0.03 0.67 6.75 -51.92 -0.35 0.32 16 44 H 0.27 8.14 6.20 -40.82 -0.25 7.89 16 45 H 0.07 1.47 6.58 -51.93 -0.34 1.13 16 46 H 0.13 2.85 4.09 -79.74 -0.33 2.52 16 LS Contribution 363.20 15.07 5.47 5.47 Total: -1.00 -34.12 363.20 -6.85 -40.97 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -6.64 Total: 3.90 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -0.96 Total: 8.33 kcal Atomic # 7 Polarization: -61.46 SS G_CDS: 0.63 Total: -60.83 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.25 Total: -17.96 kcal Atomic # 14 Polarization: 25.21 SS G_CDS: -5.09 Total: 20.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.12 -6.85 -40.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074372163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.835 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds