Wall clock time and date at job start Tue Mar 31 2020 19:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47106 * 2 1 4 4 C 1.34818 * 126.59334 * 125.27621 * 3 2 1 5 5 C 1.36600 * 106.83569 * 180.11099 * 4 3 2 6 6 C 1.47522 * 125.76630 * 179.89698 * 5 4 3 7 7 O 1.21600 * 119.99938 * 351.70037 * 6 5 4 8 8 N 1.34777 * 120.00179 * 171.69506 * 6 5 4 9 9 C 1.46981 * 120.72364 * 173.21295 * 8 6 5 10 10 C 1.53161 * 108.44595 * 125.48621 * 9 8 6 11 11 C 1.52505 * 109.79668 * 54.51733 * 10 9 8 12 12 H 1.09003 * 108.93550 * 180.34244 * 11 10 9 13 13 O 1.42695 * 110.62891 * 61.30076 * 11 10 9 14 14 C 1.43072 * 113.87175 * 174.64176 * 13 11 10 15 15 C 1.52803 * 109.52074 * 61.51405 * 14 13 11 16 16 N 1.47172 * 108.92685 * 308.66014 * 15 14 13 17 17 C 1.36940 * 121.22043 * 230.90535 * 16 15 14 18 18 H 1.07999 * 119.99573 * 153.49226 * 17 16 15 19 19 C 1.38806 * 120.00210 * 333.48199 * 17 16 15 20 20 N 1.31613 * 120.00161 * 339.75007 * 19 17 16 21 21 Si 1.86801 * 119.99730 * 159.74324 * 19 17 16 22 22 H 1.48506 * 109.47067 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47232 * 300.00382 * 21 19 17 24 24 H 1.48500 * 109.47318 * 60.00455 * 21 19 17 25 25 C 1.47589 * 117.55368 * 50.63216 * 16 15 14 26 26 H 1.08995 * 110.31602 * 186.93418 * 25 16 15 27 27 C 1.46800 * 120.71802 * 353.24115 * 8 6 5 28 28 N 1.34398 * 108.46305 * 359.62988 * 5 4 3 29 29 N 1.28768 * 109.52004 * 0.23029 * 28 5 4 30 30 H 1.08999 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47239 * 299.99713 * 1 2 3 32 32 H 1.09008 * 109.46954 * 59.99947 * 1 2 3 33 33 H 1.09006 * 109.47079 * 240.00410 * 2 1 3 34 34 H 1.09000 * 109.47559 * 120.00235 * 2 1 3 35 35 H 1.07993 * 126.58290 * 359.96721 * 4 3 2 36 36 H 1.09001 * 109.64153 * 245.17150 * 9 8 6 37 37 H 1.08993 * 109.64122 * 5.80401 * 9 8 6 38 38 H 1.08990 * 109.41708 * 174.61574 * 10 9 8 39 39 H 1.08997 * 109.41423 * 294.42321 * 10 9 8 40 40 H 1.08996 * 109.47716 * 181.64673 * 14 13 11 41 41 H 1.09002 * 109.47451 * 301.65875 * 14 13 11 42 42 H 1.09003 * 109.53769 * 188.79682 * 15 14 13 43 43 H 1.09007 * 109.43975 * 68.46439 * 15 14 13 44 44 H 0.97005 * 120.00481 * 353.40105 * 20 19 17 45 45 H 1.09002 * 109.52204 * 114.36687 * 27 8 6 46 46 H 1.09001 * 109.57272 * 354.20961 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8756 1.9306 0.8837 5 6 3.0507 3.2322 0.5082 6 6 3.9084 4.2189 1.1917 7 8 4.4165 3.9448 2.2619 8 7 4.1290 5.4239 0.6299 9 6 4.8561 6.4714 1.3609 10 6 6.0293 6.9410 0.4954 11 6 5.5194 7.3724 -0.8757 12 1 6.3653 7.6977 -1.4814 13 8 4.6079 8.4634 -0.7527 14 6 4.1789 9.0035 -2.0062 15 6 3.4422 7.9263 -2.8010 16 7 4.2790 6.7168 -2.8551 17 6 4.5480 6.0924 -4.0438 18 1 5.4510 5.5105 -4.1558 19 6 3.6602 6.2071 -5.1046 20 7 2.4103 6.5542 -4.8821 21 14 4.2395 5.8690 -6.8480 22 1 3.1085 6.0599 -7.7913 23 1 5.3371 6.8069 -7.1956 24 1 4.7336 4.4718 -6.9433 25 6 4.8225 6.2052 -1.5819 26 1 5.5180 5.3871 -1.7689 27 6 3.6476 5.7190 -0.7252 28 7 2.3142 3.4604 -0.5926 29 7 1.6885 2.3844 -0.9224 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.3339 1.4370 1.7279 36 1 4.1888 7.3101 1.5597 37 1 5.2328 6.0681 2.3008 38 1 6.5226 7.7835 0.9799 39 1 6.7415 6.1246 0.3766 40 1 3.5114 9.8468 -1.8292 41 1 5.0470 9.3399 -2.5731 42 1 3.2527 8.2853 -3.8127 43 1 2.4971 7.6954 -2.3095 44 1 2.0844 6.6367 -3.9722 45 1 2.8842 6.4957 -0.6795 46 1 3.2237 4.8170 -1.1666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074372163.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:33 Heat of formation + Delta-G solvation = 42.728882 kcal Electronic energy + Delta-G solvation = -30783.998525 eV Core-core repulsion = 26711.690405 eV Total energy + Delta-G solvation = -4072.308120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.32680 -41.43214 -40.01139 -37.18616 -36.78082 -36.38424 -33.46150 -33.31689 -32.36276 -31.57003 -30.73979 -29.10249 -26.68649 -25.78867 -25.47720 -24.54444 -24.16869 -22.75279 -22.58595 -21.08658 -20.01751 -19.53221 -18.58681 -17.63813 -17.34209 -17.21482 -17.01531 -16.68161 -16.55961 -16.02144 -15.75927 -15.62769 -15.44106 -15.40291 -15.08841 -14.96261 -14.31964 -14.10021 -13.84742 -13.77452 -13.57588 -13.35652 -13.24832 -12.98398 -12.87693 -12.55855 -12.47289 -12.36355 -12.26206 -11.93605 -11.86234 -11.72203 -11.55569 -11.34950 -11.20947 -11.02588 -10.80989 -10.42114 -10.39976 -9.75169 -8.89426 -8.19810 -5.43388 0.14019 0.54967 1.14103 1.56384 1.63899 1.82623 1.88585 2.14854 2.61653 2.79545 3.04536 3.22430 3.32414 3.44132 3.71007 3.78051 3.91990 3.96032 3.96790 4.08497 4.12754 4.23523 4.25883 4.26799 4.31487 4.39518 4.40594 4.52962 4.57963 4.71623 4.73790 4.80758 4.86396 4.89666 4.92820 4.99769 5.11844 5.19590 5.21314 5.30822 5.48624 5.57287 5.75017 6.23174 6.25615 6.37540 6.80335 6.96664 7.07004 7.71234 8.14697 9.01683 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009345 B = 0.005022 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.601867 B = 5573.631950 C = 7908.427881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.347 5.347 4 C 0.115 3.885 5 C -0.134 4.134 6 C 0.604 3.396 7 O -0.563 6.563 8 N -0.592 5.592 9 C 0.116 3.884 10 C -0.111 4.111 11 C 0.084 3.916 12 H 0.048 0.952 13 O -0.381 6.381 14 C 0.056 3.944 15 C 0.122 3.878 16 N -0.607 5.607 17 C -0.350 4.350 18 H 0.051 0.949 19 C -0.071 4.071 20 N -0.944 5.944 21 Si 1.116 2.884 22 H -0.291 1.291 23 H -0.276 1.276 24 H -0.281 1.281 25 C 0.134 3.866 26 H 0.059 0.941 27 C 0.095 3.905 28 N -0.231 5.231 29 N -0.100 5.100 30 H 0.113 0.887 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.109 0.891 34 H 0.151 0.849 35 H 0.248 0.752 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.008 0.992 44 H 0.257 0.743 45 H 0.042 0.958 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.029 -10.538 14.365 17.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.132 5.132 4 C -0.044 4.044 5 C -0.274 4.274 6 C 0.391 3.609 7 O -0.442 6.442 8 N -0.323 5.323 9 C -0.005 4.005 10 C -0.149 4.149 11 C 0.025 3.975 12 H 0.066 0.934 13 O -0.300 6.300 14 C -0.022 4.022 15 C -0.003 4.003 16 N -0.331 5.331 17 C -0.479 4.479 18 H 0.069 0.931 19 C -0.267 4.267 20 N -0.586 5.586 21 Si 0.940 3.060 22 H -0.217 1.217 23 H -0.202 1.202 24 H -0.207 1.207 25 C 0.026 3.974 26 H 0.077 0.923 27 C -0.031 4.031 28 N -0.103 5.103 29 N -0.079 5.079 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.128 0.872 34 H 0.168 0.832 35 H 0.264 0.736 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.130 0.870 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.026 0.974 44 H 0.067 0.933 45 H 0.061 0.939 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.931 -10.313 12.199 16.001 hybrid contribution 0.534 -0.269 1.577 1.687 sum 1.465 -10.582 13.776 17.433 Atomic orbital electron populations 1.22078 0.92734 1.05019 1.02426 1.22618 0.96990 0.73885 1.07813 1.51061 1.30356 1.13220 1.18569 1.23905 0.91892 0.92465 0.96094 1.21697 1.09044 0.96809 0.99808 1.16970 0.79322 0.80848 0.83753 1.90715 1.52653 1.78486 1.22381 1.48041 1.54986 1.12828 1.16459 1.21704 0.93630 0.89524 0.95641 1.21783 0.97558 1.02620 0.92952 1.22264 0.90888 0.87064 0.97298 0.93430 1.87753 1.64303 1.48698 1.29289 1.22991 0.98535 0.95753 0.84924 1.21449 0.92320 0.87417 0.99131 1.44467 1.59915 1.26734 1.01988 1.20185 1.03898 1.32261 0.91571 0.93130 1.27152 0.92976 0.99252 1.07367 1.70872 1.14654 1.49661 1.23408 0.82849 0.74876 0.76701 0.71547 1.21684 1.20231 1.20696 1.21704 0.94479 0.95119 0.86049 0.92292 1.22737 0.97033 1.02894 0.80424 1.74613 1.06056 1.18820 1.10836 1.82017 1.21029 0.91384 1.13469 0.86830 0.92338 0.93452 0.87245 0.83174 0.73608 0.90764 0.87778 0.87227 0.89501 0.86999 0.93495 0.91970 0.97419 0.93262 0.93919 0.87145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 10.12 71.98 0.73 -1.20 16 2 C 0.11 1.16 7.26 86.38 0.63 1.79 16 3 N -0.35 -7.97 3.69 -347.09 -1.28 -9.25 16 4 C 0.11 2.63 11.28 83.85 0.95 3.57 16 5 C -0.13 -4.47 6.69 40.82 0.27 -4.20 16 6 C 0.60 21.17 7.68 86.69 0.67 21.84 16 7 O -0.56 -19.66 16.31 -4.03 -0.07 -19.73 16 8 N -0.59 -21.29 2.96 -822.67 -2.44 -23.73 16 9 C 0.12 3.47 6.27 86.34 0.54 4.01 16 10 C -0.11 -3.10 5.82 30.48 0.18 -2.92 16 11 C 0.08 3.07 2.73 30.49 0.08 3.15 16 12 H 0.05 1.78 8.11 -2.39 -0.02 1.76 16 13 O -0.38 -14.32 9.59 -148.98 -1.43 -15.75 16 14 C 0.06 2.16 6.96 71.92 0.50 2.66 16 15 C 0.12 5.95 4.23 86.19 0.36 6.31 16 16 N -0.61 -31.22 2.60 -673.18 -1.75 -32.97 16 17 C -0.35 -19.93 9.64 84.03 0.81 -19.12 16 18 H 0.05 2.89 7.91 -2.91 -0.02 2.87 16 19 C -0.07 -4.10 4.86 84.86 0.41 -3.69 16 20 N -0.94 -58.43 12.34 21.65 0.27 -58.16 16 21 Si 1.12 51.80 29.96 68.60 2.06 53.86 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 C 0.13 5.89 3.03 44.95 0.14 6.03 16 26 H 0.06 2.72 7.99 -2.39 -0.02 2.70 16 27 C 0.09 4.05 5.30 86.43 0.46 4.51 16 28 N -0.23 -9.19 8.80 -49.99 -0.44 -9.63 16 29 N -0.10 -3.52 13.65 37.02 0.51 -3.01 16 30 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.84 8.14 -2.38 -0.02 0.83 16 33 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.15 0.32 8.08 -2.39 -0.02 0.30 16 35 H 0.25 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.07 2.23 7.95 -2.39 -0.02 2.21 16 37 H 0.10 2.83 7.01 -2.39 -0.02 2.82 16 38 H 0.11 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 41 H 0.05 1.80 8.13 -2.39 -0.02 1.78 16 42 H 0.06 3.36 6.26 -2.39 -0.01 3.34 16 43 H 0.01 0.41 6.75 -2.38 -0.02 0.39 16 44 H 0.26 16.32 6.20 -92.70 -0.57 15.75 16 45 H 0.04 2.00 6.58 -2.39 -0.02 1.98 16 46 H 0.11 5.26 4.09 -38.37 -0.16 5.10 16 Total: -1.00 -79.08 363.20 3.19 -75.88 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 1.05 Total: 19.76 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 6.72 Total: 22.73 kcal Atomic # 7 Polarization: -131.62 SS G_CDS: -5.14 Total: -136.76 kcal Atomic # 8 Polarization: -33.99 SS G_CDS: -1.49 Total: -35.48 kcal Atomic # 14 Polarization: 51.80 SS G_CDS: 2.06 Total: 53.86 kcal Total: -79.08 3.19 -75.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074372163.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.613 kcal (2) G-P(sol) polarization free energy of solvation -79.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds