Wall clock time and date at job start Tue Mar 31 2020 19:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46753 * 2 1 4 4 C 1.34819 * 126.59377 * 125.24396 * 3 2 1 5 5 C 1.36597 * 106.83942 * 180.13050 * 4 3 2 6 6 C 1.47518 * 125.77149 * 179.89988 * 5 4 3 7 7 O 1.21592 * 119.99849 * 352.97339 * 6 5 4 8 8 N 1.34774 * 120.00003 * 172.97545 * 6 5 4 9 9 C 1.46828 * 120.40847 * 353.18762 * 8 6 5 10 10 C 1.53364 * 109.25480 * 232.26218 * 9 8 6 11 11 C 1.52786 * 108.81443 * 306.17197 * 10 9 8 12 12 H 1.09007 * 109.34011 * 303.34374 * 11 10 9 13 13 O 1.42593 * 111.12462 * 182.55320 * 11 10 9 14 14 C 1.43141 * 113.64094 * 176.39681 * 13 11 10 15 15 C 1.53199 * 109.73831 * 61.68967 * 14 13 11 16 16 N 1.47352 * 108.79341 * 308.78021 * 15 14 13 17 17 C 1.36940 * 121.29787 * 230.21741 * 16 15 14 18 18 H 1.07998 * 119.99616 * 142.97628 * 17 16 15 19 19 C 1.38808 * 120.00255 * 322.97324 * 17 16 15 20 20 N 1.31613 * 120.00057 * 343.71118 * 19 17 16 21 21 Si 1.86807 * 119.99782 * 163.71117 * 19 17 16 22 22 H 1.48496 * 109.47117 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47006 * 119.99964 * 21 19 17 24 24 H 1.48502 * 109.47022 * 240.00178 * 21 19 17 25 25 C 1.46869 * 117.39590 * 50.25007 * 16 15 14 26 26 H 1.08992 * 110.21568 * 67.98126 * 25 16 15 27 27 C 1.47134 * 120.40419 * 173.21282 * 8 6 5 28 28 N 1.34399 * 108.45698 * 359.63811 * 5 4 3 29 29 N 1.28763 * 109.52549 * 0.22293 * 28 5 4 30 30 H 1.09003 * 109.46427 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47275 * 299.99679 * 1 2 3 32 32 H 1.08996 * 109.47420 * 60.00054 * 1 2 3 33 33 H 1.09002 * 109.47275 * 240.00321 * 2 1 3 34 34 H 1.08996 * 109.47420 * 119.99946 * 2 1 3 35 35 H 1.08001 * 126.57906 * 359.97438 * 4 3 2 36 36 H 1.08998 * 109.50768 * 112.32734 * 9 8 6 37 37 H 1.09010 * 109.50855 * 352.19643 * 9 8 6 38 38 H 1.09005 * 109.58433 * 186.37544 * 10 9 8 39 39 H 1.08999 * 109.58630 * 65.97300 * 10 9 8 40 40 H 1.09001 * 109.42669 * 181.76882 * 14 13 11 41 41 H 1.09002 * 109.42603 * 301.60816 * 14 13 11 42 42 H 1.08996 * 109.58063 * 188.99063 * 15 14 13 43 43 H 1.09002 * 109.58207 * 68.57456 * 15 14 13 44 44 H 0.97004 * 120.00124 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.72570 * 246.41363 * 27 8 6 46 46 H 1.08999 * 109.72934 * 7.09316 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8750 1.9309 0.8840 5 6 3.0500 3.2326 0.5087 6 6 3.9071 4.2194 1.1925 7 8 4.4336 3.9371 2.2516 8 7 4.1067 5.4339 0.6433 9 6 3.6003 5.7336 -0.7019 10 6 4.7431 6.2899 -1.5602 11 6 5.3745 7.4752 -0.8316 12 1 4.6071 8.2205 -0.6220 13 8 6.4078 8.0687 -1.6148 14 6 6.9819 9.2361 -1.0178 15 6 7.6299 8.8675 0.3205 16 7 6.6518 8.1217 1.1320 17 6 6.3892 8.4724 2.4295 18 1 5.3836 8.3970 2.8162 19 6 7.4153 8.9246 3.2475 20 7 8.6693 8.7211 2.9037 21 14 7.0164 9.8222 4.8365 22 1 5.5430 9.9211 4.9926 23 1 7.5861 9.0726 5.9849 24 1 7.6030 11.1858 4.7955 25 6 5.9702 6.9873 0.4952 26 1 6.6785 6.1811 0.3046 27 6 4.8351 6.4756 1.3843 28 7 2.3137 3.4606 -0.5923 29 7 1.6885 2.3844 -0.9224 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.3330 1.4374 1.7285 36 1 2.8026 6.4733 -0.6341 37 1 3.2141 4.8215 -1.1570 38 1 4.3505 6.6196 -2.5221 39 1 5.4937 5.5151 -1.7160 40 1 7.7382 9.6498 -1.6850 41 1 6.2017 9.9787 -0.8506 42 1 7.9241 9.7757 0.8464 43 1 8.5071 8.2453 0.1427 44 1 9.3865 9.0374 3.4752 45 1 4.1592 7.2957 1.6264 46 1 5.2473 6.0548 2.3014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074372165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:42 Heat of formation + Delta-G solvation = 63.317661 kcal Electronic energy + Delta-G solvation = -30028.057456 eV Core-core repulsion = 25956.642133 eV Total energy + Delta-G solvation = -4071.415323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.41075 -39.82298 -38.36940 -36.03772 -35.68114 -34.57707 -31.86000 -31.59048 -31.33003 -30.55672 -29.61473 -27.05573 -25.40049 -25.02143 -23.79806 -23.22872 -22.00263 -21.83152 -21.10925 -19.73341 -19.27133 -17.59494 -16.76221 -16.58284 -16.32994 -15.75435 -15.34885 -15.20954 -15.03555 -14.89000 -14.58258 -14.38668 -13.92425 -13.68315 -13.45405 -13.32290 -12.96907 -12.92858 -12.83073 -12.73208 -12.36558 -12.34252 -11.97148 -11.77816 -11.27218 -11.23853 -10.90609 -10.82720 -10.69752 -10.62482 -10.37282 -10.17894 -10.14850 -10.03929 -9.71578 -9.48500 -9.40122 -8.88747 -8.48982 -8.23731 -6.56367 -5.81441 -3.35764 0.97223 1.64663 1.78076 3.17318 3.36317 3.40774 3.44778 3.47091 3.94094 4.05245 4.31759 4.36832 4.46907 4.54980 4.60354 4.80495 4.96306 5.00560 5.14165 5.22569 5.32445 5.35304 5.43708 5.54346 5.57834 5.62931 5.81433 5.87483 5.99016 6.06089 6.12666 6.16536 6.24948 6.28812 6.35502 6.41738 6.55726 6.76544 6.83973 6.94714 7.12130 7.44385 7.62868 7.79750 7.82435 7.95456 8.36721 8.42921 9.12878 9.74852 10.40000 11.25016 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003203 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.492768 B = 8740.279475 C =10000.410984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.118 3.882 3 N -0.361 5.361 4 C 0.091 3.909 5 C -0.090 4.090 6 C 0.598 3.402 7 O -0.536 6.536 8 N -0.594 5.594 9 C 0.090 3.910 10 C -0.122 4.122 11 C 0.076 3.924 12 H 0.052 0.948 13 O -0.388 6.388 14 C 0.040 3.960 15 C 0.146 3.854 16 N -0.584 5.584 17 C -0.266 4.266 18 H 0.066 0.934 19 C 0.017 3.983 20 N -0.891 5.891 21 Si 0.900 3.100 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.288 1.288 25 C 0.138 3.862 26 H 0.036 0.964 27 C 0.125 3.875 28 N -0.205 5.205 29 N -0.069 5.069 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.205 0.795 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.041 0.959 42 H 0.077 0.923 43 H 0.031 0.969 44 H 0.255 0.745 45 H 0.073 0.927 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.343 -15.418 -8.052 22.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.147 5.147 4 C -0.065 4.065 5 C -0.229 4.229 6 C 0.384 3.616 7 O -0.413 6.413 8 N -0.325 5.325 9 C -0.033 4.033 10 C -0.161 4.161 11 C 0.016 3.984 12 H 0.070 0.930 13 O -0.307 6.307 14 C -0.038 4.038 15 C 0.020 3.980 16 N -0.309 5.309 17 C -0.395 4.395 18 H 0.084 0.916 19 C -0.184 4.184 20 N -0.533 5.533 21 Si 0.729 3.271 22 H -0.200 1.200 23 H -0.215 1.215 24 H -0.215 1.215 25 C 0.030 3.970 26 H 0.054 0.946 27 C 0.004 3.996 28 N -0.078 5.078 29 N -0.048 5.048 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.222 0.778 36 H 0.085 0.915 37 H 0.145 0.855 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -14.677 -15.298 -8.791 22.951 hybrid contribution 0.543 0.315 1.930 2.029 sum -14.134 -14.983 -6.861 21.711 Atomic orbital electron populations 1.22087 0.92760 1.03636 1.04086 1.22034 0.96849 0.76269 1.05134 1.50566 1.31660 1.12258 1.20245 1.23392 0.93063 0.94055 0.96005 1.21588 1.07295 0.95151 0.98878 1.16804 0.79846 0.80824 0.84168 1.90824 1.50108 1.77777 1.22566 1.48054 1.54846 1.12196 1.17442 1.22457 0.95404 1.03818 0.81653 1.21857 0.97897 0.97524 0.98803 1.22484 0.89558 0.94180 0.92174 0.93030 1.87742 1.53245 1.43744 1.46019 1.23278 0.96932 0.86631 0.96935 1.21314 0.91140 0.97048 0.88484 1.43906 1.47633 1.29283 1.10054 1.19024 0.92620 1.41161 0.86709 0.91597 1.25301 0.95274 1.00443 0.97395 1.70056 0.98179 1.46500 1.38547 0.86283 0.78127 0.79303 0.83414 1.19963 1.21486 1.21467 1.21313 0.93157 0.91230 0.91284 0.94601 1.21811 0.93197 0.88668 0.95911 1.74414 1.05420 1.17569 1.10365 1.81954 1.20187 0.90595 1.12112 0.89936 0.91669 0.90689 0.88345 0.87668 0.77839 0.91494 0.85492 0.90347 0.91193 0.90165 0.94097 0.90465 0.95109 0.93547 0.90835 0.87781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.12 37.16 0.38 -0.29 16 2 C 0.12 0.49 7.26 -4.04 -0.03 0.47 16 3 N -0.36 -3.22 3.69 -61.06 -0.23 -3.45 16 4 C 0.09 0.94 11.28 -16.83 -0.19 0.75 16 5 C -0.09 -1.26 6.69 -83.55 -0.56 -1.82 16 6 C 0.60 10.41 7.67 -12.48 -0.10 10.31 16 7 O -0.54 -10.84 16.28 5.28 0.09 -10.75 16 8 N -0.59 -10.45 2.98 -173.93 -0.52 -10.96 16 9 C 0.09 1.35 6.05 -3.67 -0.02 1.33 16 10 C -0.12 -1.93 5.82 -26.65 -0.16 -2.08 16 11 C 0.08 1.46 2.48 -26.63 -0.07 1.39 16 12 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 13 O -0.39 -7.96 10.49 -35.23 -0.37 -8.33 16 14 C 0.04 0.80 6.95 37.26 0.26 1.06 16 15 C 0.15 3.51 5.42 -3.47 -0.02 3.50 16 16 N -0.58 -14.81 2.97 -164.35 -0.49 -15.30 16 17 C -0.27 -7.20 8.58 -15.06 -0.13 -7.33 16 18 H 0.07 1.75 6.55 -52.49 -0.34 1.41 16 19 C 0.02 0.47 4.92 -17.43 -0.09 0.39 16 20 N -0.89 -25.98 11.97 55.49 0.66 -25.32 16 21 Si 0.90 21.62 29.58 -169.99 -5.03 16.59 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.14 3.07 3.03 -67.52 -0.20 2.86 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 C 0.13 2.59 4.61 -3.70 -0.02 2.57 16 28 N -0.20 -2.79 8.77 32.84 0.29 -2.51 16 29 N -0.07 -0.83 13.65 60.35 0.82 0.00 16 30 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.11 0.17 8.08 -51.93 -0.42 -0.25 16 35 H 0.20 1.51 8.06 -52.49 -0.42 1.08 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.13 1.81 4.10 -82.36 -0.34 1.47 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.08 1.98 7.00 -51.93 -0.36 1.62 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 45 H 0.07 1.51 7.33 -51.93 -0.38 1.12 16 46 H 0.10 2.43 6.81 -51.93 -0.35 2.08 16 LS Contribution 366.51 15.07 5.52 5.52 Total: -1.00 -34.05 366.51 -7.01 -41.06 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -6.83 Total: 0.33 kcal Atomic # 6 Polarization: 14.05 SS G_CDS: -0.94 Total: 13.12 kcal Atomic # 7 Polarization: -58.08 SS G_CDS: 0.54 Total: -57.54 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.28 Total: -19.08 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.59 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.05 -7.01 -41.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074372165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.376 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds