Wall clock time and date at job start Tue Mar 31 2020 19:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46753 * 2 1 4 4 C 1.34819 * 126.59377 * 125.24396 * 3 2 1 5 5 C 1.36597 * 106.83942 * 180.13050 * 4 3 2 6 6 C 1.47518 * 125.77149 * 179.89988 * 5 4 3 7 7 O 1.21592 * 119.99849 * 352.97339 * 6 5 4 8 8 N 1.34774 * 120.00003 * 172.97545 * 6 5 4 9 9 C 1.46828 * 120.40847 * 353.18762 * 8 6 5 10 10 C 1.53364 * 109.25480 * 232.26218 * 9 8 6 11 11 C 1.52786 * 108.81443 * 306.17197 * 10 9 8 12 12 H 1.09007 * 109.34011 * 303.34374 * 11 10 9 13 13 O 1.42593 * 111.12462 * 182.55320 * 11 10 9 14 14 C 1.43141 * 113.64094 * 176.39681 * 13 11 10 15 15 C 1.53199 * 109.73831 * 61.68967 * 14 13 11 16 16 N 1.47352 * 108.79341 * 308.78021 * 15 14 13 17 17 C 1.36940 * 121.29787 * 230.21741 * 16 15 14 18 18 H 1.07998 * 119.99616 * 142.97628 * 17 16 15 19 19 C 1.38808 * 120.00255 * 322.97324 * 17 16 15 20 20 N 1.31613 * 120.00057 * 343.71118 * 19 17 16 21 21 Si 1.86807 * 119.99782 * 163.71117 * 19 17 16 22 22 H 1.48496 * 109.47117 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47006 * 119.99964 * 21 19 17 24 24 H 1.48502 * 109.47022 * 240.00178 * 21 19 17 25 25 C 1.46869 * 117.39590 * 50.25007 * 16 15 14 26 26 H 1.08992 * 110.21568 * 67.98126 * 25 16 15 27 27 C 1.47134 * 120.40419 * 173.21282 * 8 6 5 28 28 N 1.34399 * 108.45698 * 359.63811 * 5 4 3 29 29 N 1.28763 * 109.52549 * 0.22293 * 28 5 4 30 30 H 1.09003 * 109.46427 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47275 * 299.99679 * 1 2 3 32 32 H 1.08996 * 109.47420 * 60.00054 * 1 2 3 33 33 H 1.09002 * 109.47275 * 240.00321 * 2 1 3 34 34 H 1.08996 * 109.47420 * 119.99946 * 2 1 3 35 35 H 1.08001 * 126.57906 * 359.97438 * 4 3 2 36 36 H 1.08998 * 109.50768 * 112.32734 * 9 8 6 37 37 H 1.09010 * 109.50855 * 352.19643 * 9 8 6 38 38 H 1.09005 * 109.58433 * 186.37544 * 10 9 8 39 39 H 1.08999 * 109.58630 * 65.97300 * 10 9 8 40 40 H 1.09001 * 109.42669 * 181.76882 * 14 13 11 41 41 H 1.09002 * 109.42603 * 301.60816 * 14 13 11 42 42 H 1.08996 * 109.58063 * 188.99063 * 15 14 13 43 43 H 1.09002 * 109.58207 * 68.57456 * 15 14 13 44 44 H 0.97004 * 120.00124 * 179.97438 * 20 19 17 45 45 H 1.08996 * 109.72570 * 246.41363 * 27 8 6 46 46 H 1.08999 * 109.72934 * 7.09316 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8750 1.9309 0.8840 5 6 3.0500 3.2326 0.5087 6 6 3.9071 4.2194 1.1925 7 8 4.4336 3.9371 2.2516 8 7 4.1067 5.4339 0.6433 9 6 3.6003 5.7336 -0.7019 10 6 4.7431 6.2899 -1.5602 11 6 5.3745 7.4752 -0.8316 12 1 4.6071 8.2205 -0.6220 13 8 6.4078 8.0687 -1.6148 14 6 6.9819 9.2361 -1.0178 15 6 7.6299 8.8675 0.3205 16 7 6.6518 8.1217 1.1320 17 6 6.3892 8.4724 2.4295 18 1 5.3836 8.3970 2.8162 19 6 7.4153 8.9246 3.2475 20 7 8.6693 8.7211 2.9037 21 14 7.0164 9.8222 4.8365 22 1 5.5430 9.9211 4.9926 23 1 7.5861 9.0726 5.9849 24 1 7.6030 11.1858 4.7955 25 6 5.9702 6.9873 0.4952 26 1 6.6785 6.1811 0.3046 27 6 4.8351 6.4756 1.3843 28 7 2.3137 3.4606 -0.5923 29 7 1.6885 2.3844 -0.9224 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.3330 1.4374 1.7285 36 1 2.8026 6.4733 -0.6341 37 1 3.2141 4.8215 -1.1570 38 1 4.3505 6.6196 -2.5221 39 1 5.4937 5.5151 -1.7160 40 1 7.7382 9.6498 -1.6850 41 1 6.2017 9.9787 -0.8506 42 1 7.9241 9.7757 0.8464 43 1 8.5071 8.2453 0.1427 44 1 9.3865 9.0374 3.4752 45 1 4.1592 7.2957 1.6264 46 1 5.2473 6.0548 2.3014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074372165.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:41 Heat of formation + Delta-G solvation = 38.868479 kcal Electronic energy + Delta-G solvation = -30029.117652 eV Core-core repulsion = 25956.642133 eV Total energy + Delta-G solvation = -4072.475519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.31675 -41.31370 -39.92497 -37.48257 -36.53640 -36.30642 -33.53446 -33.06833 -32.35006 -31.76348 -30.95332 -28.88980 -26.96939 -25.77782 -25.34310 -24.54119 -23.42375 -22.83342 -22.46194 -21.45583 -20.51827 -18.74998 -18.53782 -17.74106 -17.31358 -17.03989 -16.99468 -16.81019 -16.32786 -16.21042 -15.85741 -15.57323 -15.33095 -15.30625 -14.85411 -14.71728 -14.58848 -14.15176 -14.00819 -13.71496 -13.40829 -13.33609 -13.09199 -13.02346 -12.85148 -12.79768 -12.47887 -12.38165 -12.29613 -12.11233 -12.01587 -11.89352 -11.55588 -11.31229 -11.23829 -10.97037 -10.72901 -10.51638 -10.37380 -9.69735 -8.63299 -7.91860 -5.50827 0.14550 0.55842 1.11252 1.44005 1.46031 1.56939 1.83648 2.15665 2.46143 2.78872 3.11713 3.22366 3.35957 3.45891 3.70156 3.85159 3.95159 3.99939 4.02717 4.11638 4.19186 4.24809 4.30154 4.32277 4.40057 4.45427 4.49828 4.56465 4.63123 4.76532 4.77506 4.83331 4.91405 4.99978 5.07035 5.09198 5.15142 5.26860 5.27074 5.45717 5.47292 5.52994 5.64586 6.28971 6.30276 6.35450 6.81712 7.04649 7.06110 7.68956 8.32146 9.12654 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003203 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.492768 B = 8740.279475 C =10000.410984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.106 3.894 3 N -0.345 5.345 4 C 0.112 3.888 5 C -0.120 4.120 6 C 0.597 3.403 7 O -0.575 6.575 8 N -0.598 5.598 9 C 0.094 3.906 10 C -0.113 4.113 11 C 0.082 3.918 12 H 0.058 0.942 13 O -0.392 6.392 14 C 0.052 3.948 15 C 0.150 3.850 16 N -0.601 5.601 17 C -0.269 4.269 18 H 0.069 0.931 19 C -0.037 4.037 20 N -0.929 5.929 21 Si 0.965 3.035 22 H -0.263 1.263 23 H -0.293 1.293 24 H -0.285 1.285 25 C 0.136 3.864 26 H 0.002 0.998 27 C 0.142 3.858 28 N -0.219 5.219 29 N -0.080 5.080 30 H 0.109 0.891 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.234 0.766 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.060 0.940 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.056 0.944 43 H -0.001 1.001 44 H 0.252 0.748 45 H 0.075 0.925 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.754 -16.821 -9.117 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.013 4.013 3 N -0.130 5.130 4 C -0.046 4.046 5 C -0.259 4.259 6 C 0.384 3.616 7 O -0.454 6.454 8 N -0.329 5.329 9 C -0.028 4.028 10 C -0.152 4.152 11 C 0.023 3.977 12 H 0.076 0.924 13 O -0.311 6.311 14 C -0.026 4.026 15 C 0.024 3.976 16 N -0.326 5.326 17 C -0.399 4.399 18 H 0.087 0.913 19 C -0.234 4.234 20 N -0.572 5.572 21 Si 0.793 3.207 22 H -0.187 1.187 23 H -0.220 1.220 24 H -0.211 1.211 25 C 0.029 3.971 26 H 0.020 0.980 27 C 0.019 3.981 28 N -0.092 5.092 29 N -0.060 5.060 30 H 0.127 0.873 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.135 0.865 34 H 0.157 0.843 35 H 0.250 0.750 36 H 0.101 0.899 37 H 0.159 0.841 38 H 0.128 0.872 39 H 0.079 0.921 40 H 0.129 0.871 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.017 0.983 44 H 0.061 0.939 45 H 0.093 0.907 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.145 -16.729 -9.911 25.924 hybrid contribution 1.249 0.557 2.245 2.629 sum -15.896 -16.172 -7.666 23.937 Atomic orbital electron populations 1.22083 0.92497 1.04974 1.02718 1.22605 0.97058 0.73838 1.07754 1.50916 1.30267 1.13214 1.18650 1.23775 0.91962 0.92813 0.96055 1.21195 1.08680 0.95799 1.00200 1.17254 0.79552 0.80989 0.83784 1.90791 1.51781 1.78518 1.24292 1.48095 1.54627 1.11855 1.18317 1.22640 0.95211 1.04968 0.79981 1.21865 0.97728 0.95670 0.99909 1.22505 0.89115 0.95437 0.90683 0.92429 1.87750 1.53542 1.43908 1.45905 1.23174 0.97730 0.86713 0.94960 1.21205 0.90491 0.95365 0.90508 1.44206 1.47866 1.30433 1.10109 1.19324 0.92752 1.40182 0.87614 0.91339 1.26080 0.95114 1.01583 1.00641 1.70199 0.99050 1.48078 1.39915 0.85256 0.78376 0.77860 0.79253 1.18707 1.22007 1.21091 1.21409 0.92788 0.89574 0.93364 0.98033 1.21351 0.92838 0.89277 0.94667 1.74289 1.05796 1.18634 1.10458 1.81868 1.20237 0.90934 1.12925 0.87261 0.92687 0.92360 0.86549 0.84272 0.74983 0.89945 0.84079 0.87216 0.92091 0.87127 0.92904 0.92538 0.98270 0.93891 0.90693 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 10.12 71.98 0.73 -0.09 16 2 C 0.11 0.49 7.26 86.38 0.63 1.12 16 3 N -0.34 -5.19 3.69 -347.09 -1.28 -6.47 16 4 C 0.11 2.05 11.28 83.85 0.95 3.00 16 5 C -0.12 -3.22 6.69 40.82 0.27 -2.94 16 6 C 0.60 21.00 7.67 86.69 0.66 21.67 16 7 O -0.57 -23.95 16.28 -4.01 -0.07 -24.01 16 8 N -0.60 -21.24 2.98 -822.44 -2.45 -23.69 16 9 C 0.09 2.69 6.05 86.44 0.52 3.22 16 10 C -0.11 -3.39 5.82 30.65 0.18 -3.22 16 11 C 0.08 3.10 2.48 30.66 0.08 3.18 16 12 H 0.06 2.15 8.13 -2.38 -0.02 2.13 16 13 O -0.39 -15.62 10.49 -148.98 -1.56 -17.18 16 14 C 0.05 2.03 6.95 72.05 0.50 2.53 16 15 C 0.15 7.47 5.42 86.28 0.47 7.94 16 16 N -0.60 -31.53 2.97 -673.89 -2.00 -33.53 16 17 C -0.27 -14.99 8.58 84.03 0.72 -14.27 16 18 H 0.07 3.72 6.55 -2.91 -0.02 3.70 16 19 C -0.04 -2.09 4.92 84.86 0.42 -1.68 16 20 N -0.93 -56.30 11.97 21.65 0.26 -56.04 16 21 Si 0.97 45.44 29.58 68.60 2.03 47.47 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 C 0.14 6.25 3.03 45.06 0.14 6.38 16 26 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 27 C 0.14 6.05 4.61 86.26 0.40 6.44 16 28 N -0.22 -5.65 8.77 -50.00 -0.44 -6.08 16 29 N -0.08 -1.76 13.65 37.02 0.51 -1.25 16 30 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.14 -0.21 8.08 -2.39 -0.02 -0.23 16 35 H 0.23 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.14 3.79 4.10 -41.76 -0.17 3.61 16 38 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 41 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 3.01 7.00 -2.39 -0.02 2.99 16 43 H 0.00 -0.05 8.14 -2.39 -0.02 -0.06 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.07 3.14 7.33 -2.39 -0.02 3.12 16 46 H 0.07 3.39 6.81 -2.39 -0.02 3.37 16 Total: -1.00 -77.98 366.51 2.48 -75.50 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.83 Total: 12.02 kcal Atomic # 6 Polarization: 26.62 SS G_CDS: 6.66 Total: 33.27 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -5.41 Total: -127.07 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -1.63 Total: -41.19 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -77.98 2.48 -75.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074372165.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.369 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds