Wall clock time and date at job start Tue Mar 31 2020 19:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46936 * 2 1 4 4 C 1.35318 * 125.86838 * 124.99485 * 3 2 1 5 5 C 1.35347 * 106.17551 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.75110 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47013 * 125.00456 * 6 5 4 8 8 O 1.21280 * 119.99896 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99975 * 179.97438 * 7 6 5 10 10 C 1.44960 * 117.32611 * 356.37251 * 9 7 6 11 11 C 1.51968 * 111.88425 * 203.97415 * 10 9 7 12 12 O 1.41324 * 111.53808 * 319.32011 * 11 10 9 13 13 C 1.40788 * 118.39863 * 56.94201 * 12 11 10 14 14 H 1.08996 * 109.34972 * 188.31080 * 13 12 11 15 15 C 1.54198 * 110.22907 * 67.70397 * 13 12 11 16 16 N 1.46870 * 106.39508 * 210.33920 * 15 13 12 17 17 C 1.36945 * 125.36747 * 197.86461 * 16 15 13 18 18 H 1.07999 * 119.99919 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99576 * 359.97426 * 17 16 15 20 20 N 1.31624 * 120.00211 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99953 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47325 * 89.99680 * 21 19 17 23 23 H 1.48503 * 109.47040 * 209.99528 * 21 19 17 24 24 H 1.48498 * 109.47150 * 329.99534 * 21 19 17 25 25 C 1.46788 * 109.27334 * 17.83684 * 16 15 13 26 26 C 1.44542 * 117.31973 * 176.63680 * 9 7 6 27 27 H 1.09000 * 109.48500 * 285.58476 * 26 9 7 28 28 N 1.33779 * 106.49692 * 0.26646 * 5 4 3 29 29 N 1.28634 * 108.88081 * 359.56368 * 28 5 4 30 30 H 1.08995 * 109.46820 * 60.00642 * 1 2 3 31 31 H 1.09006 * 109.46665 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47459 * 299.99558 * 1 2 3 33 33 H 1.08993 * 109.47495 * 239.99679 * 2 1 3 34 34 H 1.09003 * 109.47018 * 119.99618 * 2 1 3 35 35 H 1.08001 * 126.91254 * 359.97438 * 4 3 2 36 36 H 1.08997 * 109.47493 * 5.00475 * 6 5 4 37 37 H 1.09004 * 109.47375 * 245.00294 * 6 5 4 38 38 H 1.09010 * 108.99559 * 324.59342 * 10 9 7 39 39 H 1.08998 * 109.00052 * 83.35048 * 10 9 7 40 40 H 1.09000 * 109.06955 * 198.79237 * 11 10 9 41 41 H 1.09005 * 109.01367 * 79.81390 * 11 10 9 42 42 H 1.08998 * 110.07274 * 91.10221 * 15 13 12 43 43 H 1.09005 * 110.06815 * 329.57139 * 15 13 12 44 44 H 0.97003 * 119.99585 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.83163 * 239.35934 * 25 16 15 46 46 H 1.09000 * 109.89670 * 118.43422 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8755 1.9191 0.8983 5 6 3.0531 3.2079 0.5250 6 6 3.9215 4.2329 1.2078 7 6 4.8929 4.8120 0.2118 8 8 4.8809 4.4302 -0.9393 9 7 5.7744 5.7548 0.6000 10 6 5.6843 6.2273 1.9674 11 6 6.2739 7.6189 2.1259 12 8 7.4637 7.7666 1.3776 13 6 7.4169 7.5265 -0.0088 14 1 8.4297 7.5366 -0.4115 15 6 6.5699 8.6083 -0.7089 16 7 5.9625 7.9650 -1.8812 17 6 5.4264 8.6216 -2.9568 18 1 5.0009 8.0598 -3.7752 19 6 5.4300 10.0091 -2.9952 20 7 5.9481 10.6938 -1.9975 21 14 4.6982 10.9048 -4.4620 22 1 3.2567 11.1629 -4.2157 23 1 5.4059 12.1957 -4.6572 24 1 4.8503 10.0680 -5.6793 25 6 6.0211 6.5073 -1.7187 26 6 6.7283 6.2161 -0.3832 27 1 7.4916 5.4530 -0.5352 28 7 2.3012 3.3946 -0.5656 29 7 1.7051 2.2918 -0.8540 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.3264 1.4206 1.7436 36 1 4.4730 3.7591 2.0199 37 1 3.2955 5.0295 1.6101 38 1 4.6364 6.2496 2.2668 39 1 6.2228 5.5376 2.6174 40 1 6.4916 7.7956 3.1792 41 1 5.5452 8.3543 1.7849 42 1 7.2059 9.4357 -1.0238 43 1 5.7925 8.9688 -0.0352 44 1 5.9503 11.6634 -2.0243 45 1 6.5857 6.0660 -2.5400 46 1 5.0121 6.0953 -1.7003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083150901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:53 Heat of formation + Delta-G solvation = 80.863630 kcal Electronic energy + Delta-G solvation = -30018.363276 eV Core-core repulsion = 25947.708803 eV Total energy + Delta-G solvation = -4070.654473 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.29048 -40.68228 -38.33650 -35.92284 -35.65846 -34.72959 -32.91133 -32.10047 -31.03077 -29.94869 -28.75028 -27.78822 -26.75559 -24.90433 -24.50853 -23.25944 -22.15014 -21.62616 -20.55091 -19.72517 -18.43449 -17.57882 -17.30550 -16.87741 -16.59363 -16.29424 -15.68407 -15.16362 -15.12368 -14.88380 -14.67868 -14.53823 -14.10805 -13.88035 -13.51136 -13.43397 -13.02468 -12.93330 -12.70570 -12.59518 -12.21540 -12.04376 -11.99634 -11.76217 -11.52642 -11.30521 -11.01672 -10.79782 -10.70093 -10.64896 -10.35513 -10.27972 -10.08192 -10.00181 -9.66728 -9.39259 -9.16491 -8.82826 -8.50318 -8.14933 -6.69326 -5.58532 -2.95881 1.52483 2.19148 2.53505 2.88523 3.20593 3.48509 3.53063 3.55739 4.03077 4.14366 4.26725 4.38707 4.56488 4.61301 4.64994 4.65336 4.89216 4.92934 5.07420 5.12124 5.16226 5.20709 5.25080 5.38262 5.46121 5.49876 5.59150 5.64702 5.72403 5.79536 5.83208 5.91843 5.99806 6.05906 6.19132 6.32625 6.49279 6.66420 6.94962 7.28762 7.45417 7.56577 7.70547 7.81759 7.95661 8.38852 8.50829 8.55935 9.32334 9.92679 10.55347 11.48519 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.003347 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.661197 B = 8362.684887 C = 9998.921429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.113 3.887 3 N -0.296 5.296 4 C -0.050 4.050 5 C -0.003 4.003 6 C -0.053 4.053 7 C 0.507 3.493 8 O -0.504 6.504 9 N -0.591 5.591 10 C 0.077 3.923 11 C 0.057 3.943 12 O -0.371 6.371 13 C 0.067 3.933 14 H 0.112 0.888 15 C 0.141 3.859 16 N -0.603 5.603 17 C -0.215 4.215 18 H 0.079 0.921 19 C -0.013 4.013 20 N -0.926 5.926 21 Si 0.914 3.086 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.122 3.878 26 C 0.114 3.886 27 H 0.067 0.933 28 N -0.233 5.233 29 N -0.085 5.085 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.188 0.812 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.098 0.902 43 H 0.021 0.979 44 H 0.251 0.749 45 H 0.030 0.970 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 -20.856 15.176 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.008 4.008 3 N -0.090 5.090 4 C -0.201 4.201 5 C -0.142 4.142 6 C -0.095 4.095 7 C 0.294 3.706 8 O -0.378 6.378 9 N -0.326 5.326 10 C -0.046 4.046 11 C -0.020 4.020 12 O -0.288 6.288 13 C 0.008 3.992 14 H 0.130 0.870 15 C 0.016 3.984 16 N -0.331 5.331 17 C -0.344 4.344 18 H 0.097 0.903 19 C -0.208 4.208 20 N -0.575 5.575 21 Si 0.745 3.255 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.003 4.003 26 C 0.010 3.990 27 H 0.085 0.915 28 N -0.099 5.099 29 N -0.065 5.065 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.205 0.795 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.039 0.961 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.251 -20.488 13.295 24.982 hybrid contribution -0.067 -0.008 0.272 0.281 sum -5.318 -20.496 13.567 25.149 Atomic orbital electron populations 1.22080 0.92733 1.03572 1.04161 1.22048 0.96896 0.76750 1.05088 1.47440 1.30871 1.11983 1.18736 1.23235 1.01160 0.95414 1.00313 1.21244 1.02251 0.93861 0.96797 1.19969 0.95515 0.96887 0.97114 1.20313 0.81210 0.79996 0.89104 1.90727 1.69293 1.59268 1.18537 1.46682 1.34458 1.39973 1.11510 1.21666 1.01948 0.97908 0.83123 1.22225 0.88827 0.94410 0.96574 1.86844 1.32772 1.89475 1.19672 1.23072 1.01236 0.94130 0.80730 0.87026 1.22036 0.95111 0.93468 0.87828 1.44272 1.69757 0.99346 1.19722 1.19100 1.30499 0.89051 0.95720 0.90345 1.24776 1.01572 0.96123 0.98348 1.69871 1.50857 1.05685 1.31123 0.86068 0.78503 0.79085 0.81882 1.21697 1.21744 1.20662 1.21833 1.00458 0.86293 0.91745 1.21544 0.90843 0.96947 0.89651 0.91460 1.75211 1.07372 1.15397 1.11940 1.78334 1.20884 0.92756 1.14480 0.90537 0.89998 0.91753 0.88377 0.87836 0.79478 0.87388 0.87260 0.90053 0.91704 0.87957 0.92236 0.88446 0.96137 0.93857 0.95205 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 10.04 37.16 0.37 -0.49 16 2 C 0.11 0.63 7.18 -4.04 -0.03 0.60 16 3 N -0.30 -3.20 3.44 -61.26 -0.21 -3.41 16 4 C -0.05 -0.50 11.49 -17.05 -0.20 -0.70 16 5 C 0.00 -0.04 6.00 -82.78 -0.50 -0.53 16 6 C -0.05 -0.62 4.85 -29.04 -0.14 -0.77 16 7 C 0.51 8.55 7.05 -10.98 -0.08 8.47 16 8 O -0.50 -10.73 12.61 5.56 0.07 -10.66 16 9 N -0.59 -9.75 3.09 -169.00 -0.52 -10.28 16 10 C 0.08 0.94 5.87 -5.39 -0.03 0.91 16 11 C 0.06 0.80 6.74 36.63 0.25 1.05 16 12 O -0.37 -6.57 10.25 -34.36 -0.35 -6.92 16 13 C 0.07 1.35 3.91 -26.26 -0.10 1.24 16 14 H 0.11 2.13 8.14 -51.93 -0.42 1.70 16 15 C 0.14 3.55 5.26 -3.21 -0.02 3.53 16 16 N -0.60 -16.51 3.39 -171.42 -0.58 -17.09 16 17 C -0.22 -6.41 10.25 -15.06 -0.15 -6.56 16 18 H 0.08 2.31 7.83 -52.49 -0.41 1.90 16 19 C -0.01 -0.39 5.48 -17.43 -0.10 -0.48 16 20 N -0.93 -27.93 10.18 55.49 0.56 -27.37 16 21 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 22 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.12 2.94 6.06 -3.42 -0.02 2.91 16 26 C 0.11 2.23 3.35 -68.67 -0.23 2.00 16 27 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 28 N -0.23 -4.16 11.84 33.29 0.39 -3.76 16 29 N -0.09 -1.32 12.91 60.35 0.78 -0.54 16 30 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 31 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.24 8.07 -51.93 -0.42 -0.18 16 35 H 0.19 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.11 0.80 8.07 -51.93 -0.42 0.38 16 37 H 0.11 1.15 7.11 -51.93 -0.37 0.78 16 38 H 0.08 0.80 6.32 -51.92 -0.33 0.47 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.06 0.97 6.73 -51.93 -0.35 0.63 16 42 H 0.10 2.75 6.25 -51.93 -0.32 2.42 16 43 H 0.02 0.56 6.47 -51.93 -0.34 0.22 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.74 5.16 -51.93 -0.27 1.48 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -39.52 363.72 -6.96 -46.48 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.58 Total: -1.35 kcal Atomic # 6 Polarization: 12.17 SS G_CDS: -0.97 Total: 11.19 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: 0.42 Total: -62.45 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.28 Total: -17.59 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.52 -6.96 -46.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083150901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.341 kcal (2) G-P(sol) polarization free energy of solvation -39.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds