Wall clock time and date at job start Tue Mar 31 2020 19:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.46936 * 2 1 4 4 C 1.35318 * 125.86838 * 124.99485 * 3 2 1 5 5 C 1.35347 * 106.17551 * 180.02562 * 4 3 2 6 6 C 1.50697 * 126.75110 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47013 * 125.00456 * 6 5 4 8 8 O 1.21280 * 119.99896 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99975 * 179.97438 * 7 6 5 10 10 C 1.44960 * 117.32611 * 356.37251 * 9 7 6 11 11 C 1.51968 * 111.88425 * 203.97415 * 10 9 7 12 12 O 1.41324 * 111.53808 * 319.32011 * 11 10 9 13 13 C 1.40788 * 118.39863 * 56.94201 * 12 11 10 14 14 H 1.08996 * 109.34972 * 188.31080 * 13 12 11 15 15 C 1.54198 * 110.22907 * 67.70397 * 13 12 11 16 16 N 1.46870 * 106.39508 * 210.33920 * 15 13 12 17 17 C 1.36945 * 125.36747 * 197.86461 * 16 15 13 18 18 H 1.07999 * 119.99919 * 179.97438 * 17 16 15 19 19 C 1.38810 * 119.99576 * 359.97426 * 17 16 15 20 20 N 1.31624 * 120.00211 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99953 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47325 * 89.99680 * 21 19 17 23 23 H 1.48503 * 109.47040 * 209.99528 * 21 19 17 24 24 H 1.48498 * 109.47150 * 329.99534 * 21 19 17 25 25 C 1.46788 * 109.27334 * 17.83684 * 16 15 13 26 26 C 1.44542 * 117.31973 * 176.63680 * 9 7 6 27 27 H 1.09000 * 109.48500 * 285.58476 * 26 9 7 28 28 N 1.33779 * 106.49692 * 0.26646 * 5 4 3 29 29 N 1.28634 * 108.88081 * 359.56368 * 28 5 4 30 30 H 1.08995 * 109.46820 * 60.00642 * 1 2 3 31 31 H 1.09006 * 109.46665 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47459 * 299.99558 * 1 2 3 33 33 H 1.08993 * 109.47495 * 239.99679 * 2 1 3 34 34 H 1.09003 * 109.47018 * 119.99618 * 2 1 3 35 35 H 1.08001 * 126.91254 * 359.97438 * 4 3 2 36 36 H 1.08997 * 109.47493 * 5.00475 * 6 5 4 37 37 H 1.09004 * 109.47375 * 245.00294 * 6 5 4 38 38 H 1.09010 * 108.99559 * 324.59342 * 10 9 7 39 39 H 1.08998 * 109.00052 * 83.35048 * 10 9 7 40 40 H 1.09000 * 109.06955 * 198.79237 * 11 10 9 41 41 H 1.09005 * 109.01367 * 79.81390 * 11 10 9 42 42 H 1.08998 * 110.07274 * 91.10221 * 15 13 12 43 43 H 1.09005 * 110.06815 * 329.57139 * 15 13 12 44 44 H 0.97003 * 119.99585 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.83163 * 239.35934 * 25 16 15 46 46 H 1.09000 * 109.89670 * 118.43422 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8755 1.9191 0.8983 5 6 3.0531 3.2079 0.5250 6 6 3.9215 4.2329 1.2078 7 6 4.8929 4.8120 0.2118 8 8 4.8809 4.4302 -0.9393 9 7 5.7744 5.7548 0.6000 10 6 5.6843 6.2273 1.9674 11 6 6.2739 7.6189 2.1259 12 8 7.4637 7.7666 1.3776 13 6 7.4169 7.5265 -0.0088 14 1 8.4297 7.5366 -0.4115 15 6 6.5699 8.6083 -0.7089 16 7 5.9625 7.9650 -1.8812 17 6 5.4264 8.6216 -2.9568 18 1 5.0009 8.0598 -3.7752 19 6 5.4300 10.0091 -2.9952 20 7 5.9481 10.6938 -1.9975 21 14 4.6982 10.9048 -4.4620 22 1 3.2567 11.1629 -4.2157 23 1 5.4059 12.1957 -4.6572 24 1 4.8503 10.0680 -5.6793 25 6 6.0211 6.5073 -1.7187 26 6 6.7283 6.2161 -0.3832 27 1 7.4916 5.4530 -0.5352 28 7 2.3012 3.3946 -0.5656 29 7 1.7051 2.2918 -0.8540 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.3264 1.4206 1.7436 36 1 4.4730 3.7591 2.0199 37 1 3.2955 5.0295 1.6101 38 1 4.6364 6.2496 2.2668 39 1 6.2228 5.5376 2.6174 40 1 6.4916 7.7956 3.1792 41 1 5.5452 8.3543 1.7849 42 1 7.2059 9.4357 -1.0238 43 1 5.7925 8.9688 -0.0352 44 1 5.9503 11.6634 -2.0243 45 1 6.5857 6.0660 -2.5400 46 1 5.0121 6.0953 -1.7003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083150901.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:52 Heat of formation + Delta-G solvation = 49.403402 kcal Electronic energy + Delta-G solvation = -30019.727494 eV Core-core repulsion = 25947.708803 eV Total energy + Delta-G solvation = -4072.018691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.16580 -42.07391 -39.73092 -37.66188 -36.42810 -36.05014 -34.48399 -33.48105 -31.72899 -31.63625 -29.88501 -29.49592 -28.26580 -26.46274 -25.53558 -24.63193 -23.28786 -22.61627 -22.05150 -21.11421 -19.81528 -19.12914 -18.33363 -18.21603 -18.01548 -17.32003 -16.87639 -16.82456 -16.44606 -16.16043 -15.75853 -15.61184 -15.34834 -15.24512 -14.97072 -14.62082 -14.29964 -14.24444 -13.92999 -13.62822 -13.49660 -13.27751 -13.07203 -12.95558 -12.88179 -12.75487 -12.59546 -12.30438 -12.25250 -12.12972 -12.09626 -11.85716 -11.66709 -11.55891 -10.94572 -10.79463 -10.78407 -10.41121 -10.02932 -9.49128 -8.90180 -7.85838 -5.27350 0.73450 1.40661 1.43451 1.47231 1.52798 1.62864 1.67451 2.01672 2.44728 2.80518 3.25589 3.33801 3.41285 3.64713 3.74861 3.77085 3.88868 3.93345 3.99349 4.02322 4.12341 4.24459 4.29852 4.31417 4.40208 4.42685 4.49546 4.50193 4.60567 4.74820 4.75589 4.81901 4.92798 5.03103 5.04425 5.12943 5.14975 5.27900 5.36845 5.47932 5.66515 5.69377 5.80294 6.19597 6.32407 6.48187 7.05872 7.26833 7.63508 7.71806 8.32832 9.18368 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012932 B = 0.003347 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.661197 B = 8362.684887 C = 9998.921429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.102 3.898 3 N -0.289 5.289 4 C -0.021 4.021 5 C -0.036 4.036 6 C -0.041 4.041 7 C 0.498 3.502 8 O -0.560 6.560 9 N -0.596 5.596 10 C 0.071 3.929 11 C 0.046 3.954 12 O -0.372 6.372 13 C 0.088 3.912 14 H 0.121 0.879 15 C 0.151 3.849 16 N -0.622 5.622 17 C -0.245 4.245 18 H 0.068 0.932 19 C -0.061 4.061 20 N -0.946 5.946 21 Si 0.981 3.019 22 H -0.287 1.287 23 H -0.284 1.284 24 H -0.273 1.273 25 C 0.124 3.876 26 C 0.128 3.872 27 H 0.084 0.916 28 N -0.301 5.301 29 N -0.132 5.132 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.150 0.850 35 H 0.247 0.753 36 H 0.166 0.834 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.151 0.849 41 H 0.026 0.974 42 H 0.062 0.938 43 H -0.006 1.006 44 H 0.250 0.750 45 H 0.014 0.986 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 -23.365 18.753 30.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.083 5.083 4 C -0.173 4.173 5 C -0.176 4.176 6 C -0.081 4.081 7 C 0.287 3.713 8 O -0.438 6.438 9 N -0.331 5.331 10 C -0.050 4.050 11 C -0.030 4.030 12 O -0.289 6.289 13 C 0.028 3.972 14 H 0.139 0.861 15 C 0.025 3.975 16 N -0.350 5.350 17 C -0.374 4.374 18 H 0.086 0.914 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.809 3.191 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.199 1.199 25 C -0.001 4.001 26 C 0.023 3.977 27 H 0.102 0.898 28 N -0.167 5.167 29 N -0.111 5.111 30 H 0.065 0.935 31 H 0.129 0.871 32 H 0.078 0.922 33 H 0.121 0.879 34 H 0.168 0.832 35 H 0.263 0.737 36 H 0.184 0.816 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.168 0.832 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.012 0.988 44 H 0.059 0.941 45 H 0.032 0.968 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.935 -23.018 16.902 28.980 hybrid contribution -0.227 0.708 -0.773 1.073 sum -5.162 -22.309 16.129 28.009 Atomic orbital electron populations 1.22057 0.92737 1.04906 1.02446 1.22576 0.97004 0.74507 1.07616 1.47926 1.29953 1.12848 1.17572 1.24057 0.98953 0.93972 1.00315 1.21791 1.02953 0.96176 0.96685 1.20104 0.94381 0.97144 0.96509 1.21323 0.81228 0.79310 0.89424 1.90707 1.70674 1.61155 1.21260 1.46859 1.33779 1.39846 1.12581 1.22066 1.04478 0.97288 0.81207 1.22630 0.87061 0.95145 0.98214 1.86851 1.34577 1.89536 1.17912 1.22673 1.00411 0.92169 0.81934 0.86145 1.21790 0.94223 0.94397 0.87043 1.44537 1.69699 1.00953 1.19766 1.19344 1.31511 0.89862 0.96669 0.91383 1.25616 1.01920 0.96602 1.01198 1.70108 1.51184 1.05643 1.32546 0.85049 0.77547 0.77819 0.78732 1.21365 1.20939 1.19850 1.21816 0.99598 0.84246 0.94438 1.21183 0.91299 0.97013 0.88236 0.89842 1.75125 1.09585 1.17301 1.14662 1.78225 1.22654 0.93552 1.16674 0.93544 0.87071 0.92160 0.87907 0.83191 0.73688 0.81644 0.86053 0.87197 0.86869 0.83172 0.95570 0.91984 0.98830 0.94074 0.96758 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 10.04 71.98 0.72 -0.71 16 2 C 0.10 0.85 7.18 86.38 0.62 1.47 16 3 N -0.29 -5.72 3.44 -347.74 -1.20 -6.91 16 4 C -0.02 -0.34 11.49 83.49 0.96 0.62 16 5 C -0.04 -0.93 6.00 41.59 0.25 -0.68 16 6 C -0.04 -0.82 4.85 29.10 0.14 -0.68 16 7 C 0.50 16.24 7.05 87.66 0.62 16.85 16 8 O -0.56 -24.61 12.61 -3.03 -0.04 -24.65 16 9 N -0.60 -18.61 3.09 -806.99 -2.50 -21.11 16 10 C 0.07 1.44 5.87 86.33 0.51 1.95 16 11 C 0.05 1.17 6.74 71.64 0.48 1.66 16 12 O -0.37 -12.56 10.25 -145.87 -1.50 -14.05 16 13 C 0.09 3.52 3.91 30.90 0.12 3.64 16 14 H 0.12 4.58 8.14 -2.39 -0.02 4.56 16 15 C 0.15 7.96 5.26 86.71 0.46 8.41 16 16 N -0.62 -35.94 3.39 -696.24 -2.36 -38.30 16 17 C -0.24 -15.35 10.25 84.03 0.86 -14.49 16 18 H 0.07 4.27 7.83 -2.91 -0.02 4.24 16 19 C -0.06 -3.69 5.48 84.86 0.47 -3.22 16 20 N -0.95 -59.15 10.18 21.65 0.22 -58.93 16 21 Si 0.98 49.21 29.55 68.60 2.03 51.24 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 23 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 25 C 0.12 6.29 6.06 86.63 0.52 6.82 16 26 C 0.13 4.99 3.35 45.56 0.15 5.14 16 27 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 28 N -0.30 -11.12 11.84 -48.60 -0.58 -11.69 16 29 N -0.13 -4.23 12.91 37.02 0.48 -3.75 16 30 H 0.05 0.69 8.12 -2.39 -0.02 0.67 16 31 H 0.11 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.15 -0.12 8.07 -2.39 -0.02 -0.14 16 35 H 0.25 0.72 8.06 -2.91 -0.02 0.70 16 36 H 0.17 1.33 8.07 -2.39 -0.02 1.31 16 37 H 0.12 2.14 7.11 -2.38 -0.02 2.13 16 38 H 0.11 1.64 6.32 -2.38 -0.02 1.62 16 39 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.15 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.03 0.84 6.73 -2.38 -0.02 0.83 16 42 H 0.06 3.69 6.25 -2.39 -0.01 3.67 16 43 H -0.01 -0.35 6.47 -2.38 -0.02 -0.37 16 44 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.04 2.40 5.16 -2.39 -0.01 2.39 16 Total: -1.00 -98.07 363.72 2.45 -95.62 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: 1.00 Total: 5.75 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 6.88 Total: 26.78 kcal Atomic # 7 Polarization: -134.76 SS G_CDS: -5.93 Total: -140.69 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -1.53 Total: -38.70 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.24 kcal Total: -98.07 2.45 -95.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083150901.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.025 kcal (2) G-P(sol) polarization free energy of solvation -98.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds