Wall clock time and date at job start Tue Mar 31 2020 19:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.46851 * 2 1 4 4 N 1.28526 * 124.44477 * 269.97258 * 3 2 1 5 5 C 1.31135 * 109.05862 * 179.73522 * 4 3 2 6 6 C 1.50693 * 127.11283 * 180.28834 * 5 4 3 7 7 C 1.40926 * 105.77555 * 0.43373 * 5 4 3 8 8 C 1.47796 * 127.23683 * 179.83512 * 7 5 4 9 9 O 1.21556 * 120.00174 * 6.01022 * 8 7 5 10 10 N 1.34780 * 120.00047 * 186.01037 * 8 7 5 11 11 C 1.47049 * 120.11892 * 356.20840 * 10 8 7 12 12 C 1.53542 * 107.35218 * 130.19280 * 11 10 8 13 13 O 1.42649 * 108.38148 * 55.60517 * 12 11 10 14 14 C 1.42771 * 115.69592 * 295.53951 * 13 12 11 15 15 H 1.09000 * 112.22323 * 290.72642 * 14 13 12 16 16 C 1.55399 * 107.09879 * 166.04329 * 14 13 12 17 17 N 1.47474 * 104.78688 * 281.68394 * 16 14 13 18 18 C 1.36938 * 125.69027 * 155.64201 * 17 16 14 19 19 H 1.08000 * 120.00486 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99832 * 359.94950 * 18 17 16 21 21 N 1.31621 * 120.00002 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00038 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46945 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46989 * 120.00264 * 22 20 18 25 25 H 1.48497 * 109.46929 * 240.00062 * 22 20 18 26 26 C 1.47213 * 108.62289 * 335.59924 * 17 16 14 27 27 C 1.45665 * 120.11771 * 176.18792 * 10 8 7 28 28 H 1.09008 * 109.95527 * 346.33227 * 27 10 8 29 29 N 1.28589 * 124.44547 * 90.00104 * 3 2 1 30 30 H 1.09006 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47183 * 299.99598 * 1 2 3 32 32 H 1.08997 * 109.47085 * 60.00682 * 1 2 3 33 33 H 1.08995 * 109.47001 * 239.99881 * 2 1 3 34 34 H 1.08994 * 109.46623 * 119.99920 * 2 1 3 35 35 H 1.09005 * 109.47560 * 270.17382 * 6 5 4 36 36 H 1.09006 * 109.47118 * 30.17330 * 6 5 4 37 37 H 1.09000 * 109.47086 * 150.17397 * 6 5 4 38 38 H 1.08996 * 109.88222 * 249.65813 * 11 10 8 39 39 H 1.09000 * 109.87781 * 10.73703 * 11 10 8 40 40 H 1.09002 * 109.68095 * 175.32523 * 12 11 10 41 41 H 1.09000 * 109.68879 * 295.84225 * 12 11 10 42 42 H 1.09006 * 110.37106 * 40.50833 * 16 14 13 43 43 H 1.08993 * 110.37490 * 162.74205 * 16 14 13 44 44 H 0.96996 * 120.00210 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.96115 * 241.89460 * 26 17 16 46 46 H 1.09004 * 109.95889 * 120.66148 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0664 -1.0599 5 6 2.6769 3.2604 -0.7120 6 6 3.0680 4.3901 -1.6294 7 6 2.6856 3.2675 0.6972 8 6 3.0800 4.3826 1.5835 9 8 3.3424 5.4712 1.1107 10 7 3.1488 4.1923 2.9160 11 6 2.7521 2.9017 3.4986 12 6 3.8831 2.4557 4.4365 13 8 4.1139 3.4931 5.3880 14 6 4.5937 4.7272 4.8542 15 1 5.6146 4.6458 4.4809 16 6 4.4356 5.7991 5.9682 17 7 3.0047 6.1553 5.9475 18 6 2.2957 6.6757 6.9970 19 1 1.2466 6.9041 6.8798 20 6 2.9252 6.9093 8.2120 21 7 4.2037 6.6310 8.3550 22 14 1.9580 7.6186 9.6440 23 1 0.5498 7.8409 9.2284 24 1 1.9929 6.6678 10.7842 25 1 2.5622 8.9104 10.0580 26 6 2.4658 5.8589 4.6099 27 6 3.6168 5.2643 3.7842 28 1 4.0904 6.0451 3.1890 29 7 2.2607 2.0669 1.0604 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.1324 4.3233 -1.8549 36 1 2.4956 4.3217 -2.5545 37 1 2.8590 5.3426 -1.1424 38 1 1.8270 3.0185 4.0629 39 1 2.6143 2.1647 2.7075 40 1 3.5920 1.5413 4.9536 41 1 4.7903 2.2779 3.8591 42 1 4.7089 5.3821 6.9375 43 1 5.0490 6.6719 5.7447 44 1 4.6437 6.7945 9.2038 45 1 2.1068 6.7755 4.1419 46 1 1.6523 5.1375 4.6880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083292664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:50 Heat of formation + Delta-G solvation = 89.741501 kcal Electronic energy + Delta-G solvation = -30348.374688 eV Core-core repulsion = 26278.105189 eV Total energy + Delta-G solvation = -4070.269499 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.90662 -40.29070 -38.25058 -35.69037 -35.39514 -34.77962 -33.15829 -32.20895 -31.55561 -29.72945 -28.46660 -27.68987 -27.33222 -25.36949 -24.19641 -23.20486 -22.82698 -21.35650 -20.79275 -20.28616 -18.78251 -17.56147 -17.23140 -16.96794 -16.83704 -16.41802 -15.43438 -15.06119 -15.01495 -14.88690 -14.53393 -14.23361 -14.13943 -13.79867 -13.60191 -13.17713 -13.12749 -12.90466 -12.81339 -12.61260 -12.47385 -12.05238 -11.91431 -11.75954 -11.66945 -11.28440 -11.08535 -11.03800 -10.77329 -10.59220 -10.53781 -10.40084 -10.08367 -10.01159 -9.79724 -9.48628 -9.45060 -9.38552 -8.64967 -8.20225 -6.80582 -5.61767 -3.02660 1.12059 1.73656 1.83172 2.94763 3.21019 3.43966 3.49159 3.51806 3.63407 4.27979 4.30176 4.33148 4.51170 4.54172 4.59570 4.66111 4.99985 5.05207 5.16002 5.22529 5.27227 5.34350 5.45375 5.46529 5.50162 5.52466 5.54732 5.57824 5.74673 5.76392 5.82215 5.85099 6.00470 6.11288 6.17847 6.32213 6.44419 6.61348 6.68193 6.88701 7.28247 7.43716 7.62332 7.78032 7.91240 7.96141 8.18064 8.40085 9.24036 9.85041 10.48383 11.43055 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.003063 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.743433 B = 9138.101310 C = 9563.534054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 N -0.145 5.145 4 N -0.290 5.290 5 C 0.061 3.939 6 C -0.070 4.070 7 C -0.035 4.035 8 C 0.603 3.397 9 O -0.527 6.527 10 N -0.580 5.580 11 C 0.043 3.957 12 C 0.050 3.950 13 O -0.355 6.355 14 C 0.055 3.945 15 H 0.070 0.930 16 C 0.161 3.839 17 N -0.595 5.595 18 C -0.217 4.217 19 H 0.078 0.922 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.916 3.084 23 H -0.281 1.281 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.136 3.864 27 C 0.100 3.900 28 H 0.108 0.892 29 N -0.250 5.250 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.123 0.877 43 H 0.032 0.968 44 H 0.252 0.748 45 H 0.029 0.971 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.735 -15.230 -18.790 24.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.013 3.987 3 N -0.046 5.046 4 N -0.132 5.132 5 C -0.102 4.102 6 C -0.129 4.129 7 C -0.197 4.197 8 C 0.388 3.612 9 O -0.402 6.402 10 N -0.312 5.312 11 C -0.080 4.080 12 C -0.029 4.029 13 O -0.273 6.273 14 C -0.004 4.004 15 H 0.088 0.912 16 C 0.036 3.964 17 N -0.321 5.321 18 C -0.346 4.346 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.747 3.253 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.009 3.991 27 C -0.004 4.004 28 H 0.126 0.874 29 N -0.097 5.097 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.095 0.905 39 H 0.151 0.849 40 H 0.116 0.884 41 H 0.062 0.938 42 H 0.141 0.859 43 H 0.049 0.951 44 H 0.063 0.937 45 H 0.047 0.953 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -3.071 -15.886 -18.617 24.666 hybrid contribution -0.290 0.954 0.489 1.110 sum -3.362 -14.933 -18.128 23.726 Atomic orbital electron populations 1.22197 0.92808 1.04082 1.03942 1.22108 0.96311 0.74145 1.06111 1.48338 1.43478 1.13412 0.99402 1.73929 1.18741 1.05169 1.15338 1.23244 1.00699 0.93742 0.92537 1.20258 1.01908 0.93879 0.96820 1.22991 1.08993 0.93367 0.94375 1.16793 0.77795 0.85422 0.81223 1.90769 1.50411 1.24179 1.74803 1.47538 1.63627 1.14926 1.05073 1.23418 0.98921 0.85754 0.99921 1.22832 0.96225 0.92015 0.91782 1.88000 1.86059 1.20945 1.32300 1.24187 0.94063 0.86070 0.96100 0.91198 1.22130 0.85402 0.91083 0.97822 1.44334 1.06389 1.74597 1.06808 1.19095 0.93051 1.33541 0.88866 0.90397 1.24766 0.96140 1.01835 0.97839 1.69739 1.08912 1.54078 1.24358 0.85974 0.78768 0.78218 0.82379 1.20598 1.21769 1.21785 1.21357 0.94013 0.96801 0.86914 1.22432 0.97100 0.89366 0.91463 0.87395 1.74071 1.16211 1.04728 1.14670 0.89383 0.91136 0.91343 0.87132 0.87017 0.90122 0.90682 0.88322 0.90465 0.84850 0.88411 0.93788 0.85926 0.95076 0.93713 0.95316 0.95448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.85 10.24 37.16 0.38 -0.47 16 2 C 0.13 0.75 7.24 -4.04 -0.03 0.72 16 3 N -0.14 -1.53 3.94 -10.62 -0.04 -1.57 16 4 N -0.29 -3.46 12.01 33.92 0.41 -3.05 16 5 C 0.06 0.79 7.39 -81.88 -0.61 0.18 16 6 C -0.07 -0.74 10.05 36.00 0.36 -0.37 16 7 C -0.04 -0.50 6.93 -82.68 -0.57 -1.08 16 8 C 0.60 10.12 7.68 -12.35 -0.09 10.02 16 9 O -0.53 -9.77 14.59 5.32 0.08 -9.69 16 10 N -0.58 -9.94 2.72 -165.79 -0.45 -10.39 16 11 C 0.04 0.65 6.23 -3.46 -0.02 0.63 16 12 C 0.05 0.75 7.02 37.44 0.26 1.02 16 13 O -0.36 -7.21 10.09 -35.23 -0.36 -7.57 16 14 C 0.06 1.12 4.12 -24.66 -0.10 1.02 16 15 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 16 C 0.16 3.99 5.47 -2.24 -0.01 3.97 16 17 N -0.60 -15.70 3.40 -169.99 -0.58 -16.28 16 18 C -0.22 -6.18 10.28 -15.06 -0.15 -6.34 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -27.02 10.09 55.49 0.56 -26.46 16 22 Si 0.92 22.39 29.55 -169.99 -5.02 17.36 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 C 0.14 3.08 6.87 -3.32 -0.02 3.06 16 27 C 0.10 1.97 3.08 -67.25 -0.21 1.76 16 28 H 0.11 2.15 7.08 -51.92 -0.37 1.78 16 29 N -0.25 -3.13 8.48 33.42 0.28 -2.85 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.17 6.68 -51.93 -0.35 0.82 16 38 H 0.08 1.24 7.57 -51.93 -0.39 0.85 16 39 H 0.13 1.76 3.82 -106.77 -0.41 1.35 16 40 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.12 3.44 5.86 -51.93 -0.30 3.13 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.03 0.63 7.25 -51.93 -0.38 0.26 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -34.06 366.40 -7.33 -41.39 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: -6.81 Total: -0.13 kcal Atomic # 6 Polarization: 14.64 SS G_CDS: -0.91 Total: 13.73 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.18 Total: -60.61 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -0.28 Total: -17.26 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.06 -7.33 -41.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083292664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.130 kcal (2) G-P(sol) polarization free energy of solvation -34.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds