Wall clock time and date at job start Tue Mar 31 2020 19:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.46851 * 2 1 4 4 N 1.28526 * 124.44477 * 269.97258 * 3 2 1 5 5 C 1.31135 * 109.05862 * 179.73522 * 4 3 2 6 6 C 1.50693 * 127.11283 * 180.28834 * 5 4 3 7 7 C 1.40926 * 105.77555 * 0.43373 * 5 4 3 8 8 C 1.47796 * 127.23683 * 179.83512 * 7 5 4 9 9 O 1.21556 * 120.00174 * 6.01022 * 8 7 5 10 10 N 1.34780 * 120.00047 * 186.01037 * 8 7 5 11 11 C 1.47049 * 120.11892 * 356.20840 * 10 8 7 12 12 C 1.53542 * 107.35218 * 130.19280 * 11 10 8 13 13 O 1.42649 * 108.38148 * 55.60517 * 12 11 10 14 14 C 1.42771 * 115.69592 * 295.53951 * 13 12 11 15 15 H 1.09000 * 112.22323 * 290.72642 * 14 13 12 16 16 C 1.55399 * 107.09879 * 166.04329 * 14 13 12 17 17 N 1.47474 * 104.78688 * 281.68394 * 16 14 13 18 18 C 1.36938 * 125.69027 * 155.64201 * 17 16 14 19 19 H 1.08000 * 120.00486 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99832 * 359.94950 * 18 17 16 21 21 N 1.31621 * 120.00002 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00038 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46945 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.46989 * 120.00264 * 22 20 18 25 25 H 1.48497 * 109.46929 * 240.00062 * 22 20 18 26 26 C 1.47213 * 108.62289 * 335.59924 * 17 16 14 27 27 C 1.45665 * 120.11771 * 176.18792 * 10 8 7 28 28 H 1.09008 * 109.95527 * 346.33227 * 27 10 8 29 29 N 1.28589 * 124.44547 * 90.00104 * 3 2 1 30 30 H 1.09006 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47183 * 299.99598 * 1 2 3 32 32 H 1.08997 * 109.47085 * 60.00682 * 1 2 3 33 33 H 1.08995 * 109.47001 * 239.99881 * 2 1 3 34 34 H 1.08994 * 109.46623 * 119.99920 * 2 1 3 35 35 H 1.09005 * 109.47560 * 270.17382 * 6 5 4 36 36 H 1.09006 * 109.47118 * 30.17330 * 6 5 4 37 37 H 1.09000 * 109.47086 * 150.17397 * 6 5 4 38 38 H 1.08996 * 109.88222 * 249.65813 * 11 10 8 39 39 H 1.09000 * 109.87781 * 10.73703 * 11 10 8 40 40 H 1.09002 * 109.68095 * 175.32523 * 12 11 10 41 41 H 1.09000 * 109.68879 * 295.84225 * 12 11 10 42 42 H 1.09006 * 110.37106 * 40.50833 * 16 14 13 43 43 H 1.08993 * 110.37490 * 162.74205 * 16 14 13 44 44 H 0.96996 * 120.00210 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.96115 * 241.89460 * 26 17 16 46 46 H 1.09004 * 109.95889 * 120.66148 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2611 2.0664 -1.0599 5 6 2.6769 3.2604 -0.7120 6 6 3.0680 4.3901 -1.6294 7 6 2.6856 3.2675 0.6972 8 6 3.0800 4.3826 1.5835 9 8 3.3424 5.4712 1.1107 10 7 3.1488 4.1923 2.9160 11 6 2.7521 2.9017 3.4986 12 6 3.8831 2.4557 4.4365 13 8 4.1139 3.4931 5.3880 14 6 4.5937 4.7272 4.8542 15 1 5.6146 4.6458 4.4809 16 6 4.4356 5.7991 5.9682 17 7 3.0047 6.1553 5.9475 18 6 2.2957 6.6757 6.9970 19 1 1.2466 6.9041 6.8798 20 6 2.9252 6.9093 8.2120 21 7 4.2037 6.6310 8.3550 22 14 1.9580 7.6186 9.6440 23 1 0.5498 7.8409 9.2284 24 1 1.9929 6.6678 10.7842 25 1 2.5622 8.9104 10.0580 26 6 2.4658 5.8589 4.6099 27 6 3.6168 5.2643 3.7842 28 1 4.0904 6.0451 3.1890 29 7 2.2607 2.0669 1.0604 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.1324 4.3233 -1.8549 36 1 2.4956 4.3217 -2.5545 37 1 2.8590 5.3426 -1.1424 38 1 1.8270 3.0185 4.0629 39 1 2.6143 2.1647 2.7075 40 1 3.5920 1.5413 4.9536 41 1 4.7903 2.2779 3.8591 42 1 4.7089 5.3821 6.9375 43 1 5.0490 6.6719 5.7447 44 1 4.6437 6.7945 9.2038 45 1 2.1068 6.7755 4.1419 46 1 1.6523 5.1375 4.6880 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083292664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:49 Heat of formation + Delta-G solvation = 65.821550 kcal Electronic energy + Delta-G solvation = -30349.411935 eV Core-core repulsion = 26278.105189 eV Total energy + Delta-G solvation = -4071.306746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.83851 -41.73728 -39.70858 -37.44052 -36.18163 -36.09368 -34.44068 -33.82683 -32.39267 -31.43687 -29.64215 -29.20725 -28.74162 -26.78557 -25.68819 -24.53350 -23.67367 -22.39792 -22.18315 -21.98924 -20.18647 -19.05010 -18.47126 -18.26848 -18.01642 -17.77619 -16.92642 -16.74497 -16.33934 -16.16902 -15.75114 -15.54851 -15.29069 -14.99230 -14.83441 -14.58717 -14.29225 -14.08635 -13.90218 -13.61162 -13.56201 -13.43350 -13.10158 -13.03338 -12.84177 -12.71208 -12.65082 -12.61844 -12.30960 -12.15344 -12.02749 -11.84402 -11.71551 -11.46136 -11.40596 -11.10411 -10.87559 -10.78929 -10.31581 -9.63542 -8.91713 -7.77273 -5.22084 0.06758 0.77196 1.07596 1.47976 1.49486 1.59509 1.67485 1.98016 2.50303 2.66405 2.85188 3.33624 3.36141 3.53609 3.60168 3.66836 3.86527 3.91682 3.95488 4.00781 4.09561 4.19736 4.22333 4.28068 4.37099 4.38918 4.55104 4.62951 4.70385 4.74505 4.76982 4.78806 4.80648 4.87456 4.92268 4.96213 5.16788 5.27272 5.30600 5.37313 5.45305 5.69394 5.73938 6.13161 6.23853 6.45719 6.79583 7.03815 7.08566 7.73482 8.37183 9.25357 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.003063 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.743433 B = 9138.101310 C = 9563.534054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.117 3.883 3 N -0.127 5.127 4 N -0.291 5.291 5 C 0.054 3.946 6 C -0.068 4.068 7 C -0.063 4.063 8 C 0.604 3.396 9 O -0.550 6.550 10 N -0.584 5.584 11 C 0.049 3.951 12 C 0.047 3.953 13 O -0.385 6.385 14 C 0.072 3.928 15 H 0.095 0.905 16 C 0.163 3.837 17 N -0.614 5.614 18 C -0.240 4.240 19 H 0.077 0.923 20 C -0.061 4.061 21 N -0.945 5.945 22 Si 0.984 3.016 23 H -0.270 1.270 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.138 3.862 27 C 0.116 3.884 28 H 0.104 0.896 29 N -0.248 5.248 30 H 0.118 0.882 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.158 0.842 40 H 0.126 0.874 41 H 0.061 0.939 42 H 0.090 0.910 43 H 0.014 0.986 44 H 0.249 0.751 45 H 0.021 0.979 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.399 -17.683 -20.226 27.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.000 4.000 3 N -0.031 5.031 4 N -0.133 5.133 5 C -0.108 4.108 6 C -0.127 4.127 7 C -0.223 4.223 8 C 0.391 3.609 9 O -0.427 6.427 10 N -0.315 5.315 11 C -0.074 4.074 12 C -0.030 4.030 13 O -0.303 6.303 14 C 0.013 3.987 15 H 0.113 0.887 16 C 0.038 3.962 17 N -0.340 5.340 18 C -0.368 4.368 19 H 0.095 0.905 20 C -0.254 4.254 21 N -0.595 5.595 22 Si 0.812 3.188 23 H -0.194 1.194 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.012 3.988 27 C 0.011 3.989 28 H 0.122 0.878 29 N -0.097 5.097 30 H 0.136 0.864 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.174 0.826 40 H 0.144 0.856 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.032 0.968 44 H 0.059 0.941 45 H 0.039 0.961 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.745 -18.359 -20.089 27.471 hybrid contribution -0.163 1.567 0.848 1.789 sum -3.909 -16.792 -19.241 25.835 Atomic orbital electron populations 1.22186 0.92144 1.05638 1.02543 1.22729 0.96818 0.71925 1.08533 1.48936 1.41280 1.14339 0.98566 1.73961 1.18846 1.04897 1.15588 1.23552 1.00450 0.94558 0.92223 1.20294 1.02949 0.92380 0.97063 1.22592 1.11554 0.93560 0.94589 1.17062 0.76970 0.85825 0.81076 1.90750 1.51326 1.25403 1.75200 1.47536 1.63943 1.14916 1.05108 1.23525 0.98249 0.85225 1.00387 1.23145 0.97015 0.91366 0.91496 1.87931 1.86316 1.21578 1.34514 1.23875 0.95446 0.85314 0.94070 0.88720 1.21867 0.84525 0.91835 0.97966 1.44568 1.07076 1.74597 1.07752 1.19412 0.93424 1.34040 0.89959 0.90472 1.25614 0.97197 1.02384 1.00227 1.69987 1.10180 1.54643 1.24642 0.84939 0.77899 0.77164 0.78838 1.19434 1.21609 1.21666 1.21384 0.95056 0.96448 0.85942 1.22029 0.95602 0.90047 0.91266 0.87814 1.73863 1.16000 1.04276 1.15544 0.86366 0.92728 0.92470 0.84684 0.84738 0.89003 0.88688 0.89968 0.91784 0.82621 0.85597 0.92060 0.89204 0.96808 0.94085 0.96110 0.95921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 10.24 71.98 0.74 -0.42 16 2 C 0.12 0.89 7.24 86.38 0.63 1.52 16 3 N -0.13 -2.33 3.94 -187.51 -0.74 -3.07 16 4 N -0.29 -6.22 12.01 -46.59 -0.56 -6.78 16 5 C 0.05 1.32 7.39 43.32 0.32 1.64 16 6 C -0.07 -1.36 10.05 71.23 0.72 -0.64 16 7 C -0.06 -1.74 6.93 42.24 0.29 -1.44 16 8 C 0.60 20.01 7.68 86.77 0.67 20.68 16 9 O -0.55 -20.55 14.59 -3.89 -0.06 -20.61 16 10 N -0.58 -19.70 2.72 -796.71 -2.17 -21.87 16 11 C 0.05 1.40 6.23 86.46 0.54 1.93 16 12 C 0.05 1.33 7.02 72.16 0.51 1.83 16 13 O -0.38 -15.44 10.09 -148.98 -1.50 -16.94 16 14 C 0.07 2.95 4.12 31.93 0.13 3.08 16 15 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 16 C 0.16 8.40 5.47 87.02 0.48 8.87 16 17 N -0.61 -33.45 3.40 -691.73 -2.35 -35.80 16 18 C -0.24 -14.00 10.28 84.03 0.86 -13.14 16 19 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 20 C -0.06 -3.56 5.49 84.86 0.47 -3.09 16 21 N -0.95 -56.98 10.09 21.65 0.22 -56.76 16 22 Si 0.98 46.67 29.55 68.60 2.03 48.70 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 C 0.14 6.43 6.87 86.46 0.59 7.03 16 27 C 0.12 4.58 3.08 45.88 0.14 4.72 16 28 H 0.10 4.20 7.08 -2.38 -0.02 4.18 16 29 N -0.25 -5.66 8.48 -48.17 -0.41 -6.07 16 30 H 0.12 0.13 8.14 -2.38 -0.02 0.11 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 33 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 1.59 8.14 -2.38 -0.02 1.58 16 36 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 37 H 0.08 1.93 6.68 -2.39 -0.02 1.91 16 38 H 0.06 2.01 7.57 -2.39 -0.02 1.99 16 39 H 0.16 3.76 3.82 -73.34 -0.28 3.48 16 40 H 0.13 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.09 5.25 5.86 -2.38 -0.01 5.24 16 43 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 45 H 0.02 0.99 8.14 -2.39 -0.02 0.98 16 46 H 0.02 1.07 7.25 -2.38 -0.02 1.06 16 Total: -1.00 -75.72 366.40 2.26 -73.46 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.73 Total: 13.17 kcal Atomic # 6 Polarization: 25.50 SS G_CDS: 7.08 Total: 32.57 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -6.01 Total: -130.35 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -1.56 Total: -37.55 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -75.72 2.26 -73.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083292664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.281 kcal (2) G-P(sol) polarization free energy of solvation -75.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds