Wall clock time and date at job start Tue Mar 31 2020 18:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00169 * 2 1 4 4 O 1.42902 * 109.46918 * 135.00225 * 3 2 1 5 5 C 1.42904 * 113.99949 * 180.02562 * 4 3 2 6 6 H 1.09010 * 109.46807 * 329.99719 * 5 4 3 7 7 C 1.52999 * 109.47519 * 89.99824 * 5 4 3 8 8 C 1.50699 * 109.46897 * 210.00089 * 5 4 3 9 9 O 1.21284 * 120.00417 * 359.97438 * 8 5 4 10 10 N 1.34780 * 119.99668 * 179.97438 * 8 5 4 11 11 C 1.47583 * 134.48847 * 179.97438 * 10 8 5 12 12 C 1.53947 * 86.11463 * 155.36171 * 11 10 8 13 13 N 1.46504 * 113.74344 * 269.26153 * 12 11 10 14 14 C 1.35316 * 125.86535 * 84.71560 * 13 12 11 15 15 C 1.35353 * 106.16970 * 179.90698 * 14 13 12 16 16 C 1.50699 * 126.74795 * 180.12983 * 15 14 13 17 17 N 1.46494 * 109.47378 * 95.24310 * 16 15 14 18 18 C 1.36944 * 119.99880 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00017 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99729 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99797 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00149 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46786 * 90.00394 * 22 20 18 24 24 H 1.48502 * 109.47123 * 209.99959 * 22 20 18 25 25 H 1.48495 * 109.47058 * 330.00298 * 22 20 18 26 26 N 1.33773 * 106.50030 * 0.34761 * 15 14 13 27 27 N 1.28635 * 108.88511 * 359.77662 * 26 15 14 28 28 C 1.47573 * 134.49478 * 0.02562 * 10 8 5 29 29 H 1.07997 * 119.99932 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99807 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.99807 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46969 * 15.00787 * 3 2 1 33 33 H 1.08997 * 109.47236 * 255.00171 * 3 2 1 34 34 H 1.08999 * 109.46629 * 299.99923 * 7 5 4 35 35 H 1.09005 * 109.46814 * 59.99832 * 7 5 4 36 36 H 1.09002 * 109.47188 * 180.02562 * 7 5 4 37 37 H 1.08996 * 113.77114 * 41.06515 * 11 10 8 38 38 H 1.08993 * 113.87279 * 269.67669 * 11 10 8 39 39 H 1.09004 * 113.74083 * 137.95224 * 12 11 10 40 40 H 1.07998 * 126.91313 * 0.02562 * 14 13 12 41 41 H 1.09000 * 109.46698 * 215.24088 * 16 15 14 42 42 H 1.08996 * 109.46887 * 335.23705 * 16 15 14 43 43 H 0.96998 * 120.00051 * 359.97438 * 17 16 15 44 44 H 0.96996 * 119.99773 * 179.97438 * 21 20 18 45 45 H 1.09003 * 113.77162 * 90.33892 * 28 10 8 46 46 H 1.09004 * 113.77283 * 318.93865 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9078 2.4351 1.0329 6 1 3.9129 2.9319 0.0625 7 6 3.3032 3.3708 2.0816 8 6 5.3202 2.0860 1.4258 9 8 5.6276 0.9287 1.6186 10 7 6.2418 3.0598 1.5629 11 6 7.6726 3.0863 1.9237 12 6 7.7370 4.4123 1.1442 13 7 8.0737 4.2483 -0.2721 14 6 7.2006 3.9689 -1.2674 15 6 7.9322 3.9076 -2.4045 16 6 7.4186 3.6257 -3.7930 17 7 7.1714 4.8911 -4.4885 18 6 6.6984 4.8850 -5.7736 19 1 6.5073 3.9473 -6.2742 20 6 6.4637 6.0841 -6.4324 21 7 6.0086 6.0782 -7.6675 22 14 6.7922 7.7059 -5.5658 23 1 8.1934 8.1275 -5.8192 24 1 5.8623 8.7413 -6.0839 25 1 6.5823 7.5381 -4.1053 26 7 9.2015 4.1416 -2.0527 27 7 9.2518 4.3397 -0.7827 28 6 6.2253 4.5279 1.4135 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3856 2.1161 0.2661 33 1 2.4755 1.4868 -0.9926 34 1 2.2817 3.6233 1.7974 35 1 3.2981 2.8740 3.0519 36 1 3.8988 4.2817 2.1425 37 1 8.2545 2.2828 1.4723 38 1 7.8561 3.1956 2.9925 39 1 8.3303 5.1826 1.6370 40 1 6.1342 3.8258 -1.1736 41 1 8.1600 3.0471 -4.3440 42 1 6.4899 3.0589 -3.7286 43 1 7.3427 5.7333 -4.0387 44 1 5.8442 6.9161 -8.1277 45 1 5.9823 5.0604 2.3330 46 1 5.6513 4.8757 0.5546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105380821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:07 Heat of formation + Delta-G solvation = 112.063734 kcal Electronic energy + Delta-G solvation = -28931.090727 eV Core-core repulsion = 24861.789192 eV Total energy + Delta-G solvation = -4069.301535 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.32561 -40.92920 -39.10822 -37.69428 -35.22711 -34.42649 -33.52034 -32.07320 -31.84723 -30.40411 -29.39999 -27.16348 -26.62600 -26.20706 -24.87927 -23.46607 -22.47123 -21.22328 -20.92306 -20.41289 -19.55480 -18.07860 -17.81977 -17.44734 -17.21450 -16.68729 -16.23688 -15.84247 -15.73974 -15.00725 -14.90816 -14.54146 -14.48635 -14.16913 -13.77978 -13.55965 -13.41209 -13.24848 -13.19400 -12.93422 -12.77876 -12.73381 -12.48249 -12.14376 -12.03265 -11.89653 -11.57017 -11.29152 -11.17308 -10.91089 -10.67800 -10.58169 -10.21071 -10.08727 -9.91657 -9.66920 -9.61642 -9.42014 -9.06963 -8.92650 -7.26458 -5.78090 -3.14163 1.55783 1.70649 2.00003 2.03830 2.21065 2.69088 3.20434 3.33766 3.35570 3.41418 3.44844 3.74984 4.06105 4.28439 4.34842 4.46824 4.51452 4.58515 4.59333 4.62310 4.63609 4.76277 4.89614 4.93744 4.98988 5.01485 5.07802 5.11284 5.13008 5.25970 5.28580 5.51180 5.52498 5.54852 5.63201 5.69256 6.18912 6.22917 6.27176 6.51255 6.54249 6.63288 6.65766 6.99218 7.67807 7.96281 8.40410 8.61913 9.18220 9.90580 10.10646 11.40017 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.003447 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.332124 B = 8120.304840 C =10242.326078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.149 4.149 3 C 0.084 3.916 4 O -0.354 6.354 5 C 0.075 3.925 6 H 0.090 0.910 7 C -0.171 4.171 8 C 0.543 3.457 9 O -0.507 6.507 10 N -0.649 5.649 11 C 0.109 3.891 12 C 0.108 3.892 13 N -0.286 5.286 14 C -0.036 4.036 15 C -0.008 4.008 16 C 0.237 3.763 17 N -0.749 5.749 18 C -0.244 4.244 19 H 0.093 0.907 20 C 0.008 3.992 21 N -0.932 5.932 22 Si 0.885 3.115 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.280 1.280 26 N -0.249 5.249 27 N -0.088 5.088 28 C 0.096 3.904 29 H 0.105 0.895 30 H 0.098 0.902 31 H 0.119 0.881 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.142 0.858 40 H 0.181 0.819 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.362 0.638 44 H 0.260 0.740 45 H 0.120 0.880 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.519 -4.276 26.376 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.167 4.167 3 C 0.008 3.992 4 O -0.272 6.272 5 C 0.014 3.986 6 H 0.108 0.892 7 C -0.228 4.228 8 C 0.331 3.669 9 O -0.380 6.380 10 N -0.389 5.389 11 C -0.015 4.015 12 C 0.003 3.997 13 N -0.080 5.080 14 C -0.187 4.187 15 C -0.145 4.145 16 C 0.109 3.891 17 N -0.395 5.395 18 C -0.374 4.374 19 H 0.111 0.889 20 C -0.188 4.188 21 N -0.580 5.580 22 Si 0.715 3.285 23 H -0.209 1.209 24 H -0.217 1.217 25 H -0.207 1.207 26 N -0.117 5.117 27 N -0.066 5.066 28 C -0.028 4.028 29 H 0.123 0.877 30 H 0.116 0.884 31 H 0.136 0.864 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.160 0.840 40 H 0.198 0.802 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.195 0.805 44 H 0.070 0.930 45 H 0.137 0.863 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.083 -5.106 26.619 27.779 hybrid contribution -1.081 1.348 0.306 1.755 sum -7.164 -3.758 26.925 28.114 Atomic orbital electron populations 1.23843 0.95464 1.02362 0.99948 1.22698 0.95582 0.98120 1.00299 1.21733 0.88677 0.96331 0.92445 1.88056 1.44055 1.34717 1.60350 1.21791 0.88719 0.87667 1.00470 0.89187 1.22264 1.02134 0.98747 0.99678 1.20114 0.85464 0.84342 0.76943 1.90766 1.79934 1.18633 1.48677 1.50011 1.11272 1.06855 1.70805 1.23579 0.81114 0.96179 1.00585 1.22984 0.98229 1.00534 0.77919 1.46821 1.06515 1.46931 1.07689 1.23195 0.98562 1.09226 0.87683 1.22515 0.89610 1.04623 0.97801 1.18918 0.97330 0.89935 0.82952 1.42639 1.80770 1.01723 1.14373 1.19045 1.35659 0.94950 0.87736 0.88887 1.24630 1.01126 0.97116 0.95958 1.69699 1.51248 1.25987 1.11075 0.86548 0.78025 0.85074 0.78846 1.20925 1.21716 1.20659 1.75130 1.19576 1.14731 1.02266 1.78312 1.03613 1.20127 1.04565 1.23751 0.93400 0.81695 1.03962 0.87673 0.88370 0.86354 0.92372 0.91531 0.90813 0.91019 0.90952 0.88700 0.86897 0.84037 0.80171 0.93317 0.93727 0.80514 0.93006 0.86260 0.88159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.27 14.31 29.01 0.42 -0.86 16 2 C -0.15 -1.30 9.89 -36.03 -0.36 -1.66 16 3 C 0.08 0.74 6.16 36.01 0.22 0.96 16 4 O -0.35 -3.97 9.50 -55.14 -0.52 -4.50 16 5 C 0.07 0.66 2.97 -27.88 -0.08 0.57 16 6 H 0.09 0.65 7.79 -51.92 -0.40 0.25 16 7 C -0.17 -0.98 9.40 37.16 0.35 -0.63 16 8 C 0.54 5.99 7.46 -10.98 -0.08 5.90 16 9 O -0.51 -8.09 17.23 -14.36 -0.25 -8.33 16 10 N -0.65 -4.99 3.34 -178.53 -0.60 -5.59 16 11 C 0.11 0.72 8.63 -2.97 -0.03 0.69 16 12 C 0.11 0.69 5.19 -70.12 -0.36 0.33 16 13 N -0.29 -3.45 3.54 -56.28 -0.20 -3.65 16 14 C -0.04 -0.50 10.37 -17.04 -0.18 -0.68 16 15 C -0.01 -0.14 6.62 -82.78 -0.55 -0.69 16 16 C 0.24 4.76 6.82 -5.20 -0.04 4.72 16 17 N -0.75 -18.12 5.40 -61.09 -0.33 -18.45 16 18 C -0.24 -6.90 10.47 -15.06 -0.16 -7.06 16 19 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 20 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 21 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16 22 Si 0.88 22.26 27.73 -169.99 -4.71 17.55 16 23 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 26 N -0.25 -4.72 12.41 33.29 0.41 -4.31 16 27 N -0.09 -1.39 13.17 60.35 0.79 -0.60 16 28 C 0.10 0.41 6.06 -2.96 -0.02 0.39 16 29 H 0.11 0.62 8.06 -52.49 -0.42 0.20 16 30 H 0.10 0.59 7.90 -52.49 -0.41 0.17 16 31 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.06 0.40 7.59 -51.93 -0.39 0.01 16 33 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 34 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.26 6.14 -51.93 -0.32 -0.06 16 37 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.14 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.18 1.96 7.20 -52.49 -0.38 1.59 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.36 8.78 5.52 -40.82 -0.23 8.55 16 44 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 45 H 0.12 0.09 7.97 -51.93 -0.41 -0.32 16 46 H 0.10 0.43 6.90 -51.93 -0.36 0.07 16 LS Contribution 391.17 15.07 5.89 5.89 Total: -1.00 -39.26 391.17 -6.40 -45.66 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.71 Total: 2.57 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -0.96 Total: 2.12 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.86 Total: -60.96 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.77 Total: -12.83 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.55 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.26 -6.40 -45.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105380821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.724 kcal (2) G-P(sol) polarization free energy of solvation -39.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds