Wall clock time and date at job start Tue Mar 31 2020 18:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 120.00169 * 2 1 4 4 O 1.42902 * 109.46918 * 135.00225 * 3 2 1 5 5 C 1.42904 * 113.99949 * 180.02562 * 4 3 2 6 6 H 1.09010 * 109.46807 * 329.99719 * 5 4 3 7 7 C 1.52999 * 109.47519 * 89.99824 * 5 4 3 8 8 C 1.50699 * 109.46897 * 210.00089 * 5 4 3 9 9 O 1.21284 * 120.00417 * 359.97438 * 8 5 4 10 10 N 1.34780 * 119.99668 * 179.97438 * 8 5 4 11 11 C 1.47583 * 134.48847 * 179.97438 * 10 8 5 12 12 C 1.53947 * 86.11463 * 155.36171 * 11 10 8 13 13 N 1.46504 * 113.74344 * 269.26153 * 12 11 10 14 14 C 1.35316 * 125.86535 * 84.71560 * 13 12 11 15 15 C 1.35353 * 106.16970 * 179.90698 * 14 13 12 16 16 C 1.50699 * 126.74795 * 180.12983 * 15 14 13 17 17 N 1.46494 * 109.47378 * 95.24310 * 16 15 14 18 18 C 1.36944 * 119.99880 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00017 * 0.02562 * 18 17 16 20 20 C 1.38811 * 119.99729 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99797 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00149 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46786 * 90.00394 * 22 20 18 24 24 H 1.48502 * 109.47123 * 209.99959 * 22 20 18 25 25 H 1.48495 * 109.47058 * 330.00298 * 22 20 18 26 26 N 1.33773 * 106.50030 * 0.34761 * 15 14 13 27 27 N 1.28635 * 108.88511 * 359.77662 * 26 15 14 28 28 C 1.47573 * 134.49478 * 0.02562 * 10 8 5 29 29 H 1.07997 * 119.99932 * 179.97438 * 1 2 3 30 30 H 1.08002 * 119.99807 * 359.97438 * 1 2 3 31 31 H 1.08002 * 119.99807 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.46969 * 15.00787 * 3 2 1 33 33 H 1.08997 * 109.47236 * 255.00171 * 3 2 1 34 34 H 1.08999 * 109.46629 * 299.99923 * 7 5 4 35 35 H 1.09005 * 109.46814 * 59.99832 * 7 5 4 36 36 H 1.09002 * 109.47188 * 180.02562 * 7 5 4 37 37 H 1.08996 * 113.77114 * 41.06515 * 11 10 8 38 38 H 1.08993 * 113.87279 * 269.67669 * 11 10 8 39 39 H 1.09004 * 113.74083 * 137.95224 * 12 11 10 40 40 H 1.07998 * 126.91313 * 0.02562 * 14 13 12 41 41 H 1.09000 * 109.46698 * 215.24088 * 16 15 14 42 42 H 1.08996 * 109.46887 * 335.23705 * 16 15 14 43 43 H 0.96998 * 120.00051 * 359.97438 * 17 16 15 44 44 H 0.96996 * 119.99773 * 179.97438 * 21 20 18 45 45 H 1.09003 * 113.77162 * 90.33892 * 28 10 8 46 46 H 1.09004 * 113.77283 * 318.93865 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9078 2.4351 1.0329 6 1 3.9129 2.9319 0.0625 7 6 3.3032 3.3708 2.0816 8 6 5.3202 2.0860 1.4258 9 8 5.6276 0.9287 1.6186 10 7 6.2418 3.0598 1.5629 11 6 7.6726 3.0863 1.9237 12 6 7.7370 4.4123 1.1442 13 7 8.0737 4.2483 -0.2721 14 6 7.2006 3.9689 -1.2674 15 6 7.9322 3.9076 -2.4045 16 6 7.4186 3.6257 -3.7930 17 7 7.1714 4.8911 -4.4885 18 6 6.6984 4.8850 -5.7736 19 1 6.5073 3.9473 -6.2742 20 6 6.4637 6.0841 -6.4324 21 7 6.0086 6.0782 -7.6675 22 14 6.7922 7.7059 -5.5658 23 1 8.1934 8.1275 -5.8192 24 1 5.8623 8.7413 -6.0839 25 1 6.5823 7.5381 -4.1053 26 7 9.2015 4.1416 -2.0527 27 7 9.2518 4.3397 -0.7827 28 6 6.2253 4.5279 1.4135 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3856 2.1161 0.2661 33 1 2.4755 1.4868 -0.9926 34 1 2.2817 3.6233 1.7974 35 1 3.2981 2.8740 3.0519 36 1 3.8988 4.2817 2.1425 37 1 8.2545 2.2828 1.4723 38 1 7.8561 3.1956 2.9925 39 1 8.3303 5.1826 1.6370 40 1 6.1342 3.8258 -1.1736 41 1 8.1600 3.0471 -4.3440 42 1 6.4899 3.0589 -3.7286 43 1 7.3427 5.7333 -4.0387 44 1 5.8442 6.9161 -8.1277 45 1 5.9823 5.0604 2.3330 46 1 5.6513 4.8757 0.5546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105380821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:06 Heat of formation + Delta-G solvation = 82.265877 kcal Electronic energy + Delta-G solvation = -28932.382859 eV Core-core repulsion = 24861.789192 eV Total energy + Delta-G solvation = -4070.593667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.42996 -41.61069 -39.78042 -38.48942 -37.01283 -35.05862 -34.69199 -33.72784 -32.64277 -32.02574 -30.07498 -28.10398 -27.38748 -27.21115 -25.64992 -24.37697 -24.23845 -22.45998 -21.86626 -21.06889 -20.28939 -19.79690 -18.62616 -18.22507 -18.00372 -17.39499 -17.28612 -16.63573 -16.46222 -16.45087 -16.09263 -15.84072 -15.50823 -15.14444 -14.96863 -14.50139 -14.42183 -14.17753 -14.05664 -13.92880 -13.73237 -13.54937 -13.39817 -13.17209 -13.00005 -12.90618 -12.69321 -12.52269 -12.43557 -12.11955 -11.94024 -11.87590 -11.81133 -11.28896 -11.13364 -11.02617 -10.65552 -10.34413 -10.28437 -10.00367 -9.34209 -8.02320 -5.37075 0.48159 1.11497 1.22736 1.33924 1.37962 1.39729 1.42487 1.48427 1.50415 2.48436 2.64640 2.79658 3.12965 3.27183 3.34581 3.57181 3.71607 3.80575 3.86301 3.91215 3.97723 4.04907 4.09516 4.17563 4.21494 4.36457 4.38997 4.45009 4.49962 4.52302 4.54835 4.61744 4.69376 4.76961 4.80404 4.97270 5.02874 5.07791 5.16149 5.60487 5.63568 5.67489 5.74212 6.05304 6.20471 6.36858 6.95273 7.04813 7.41963 7.78369 7.99777 9.18806 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.008720 B = 0.003447 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3210.332124 B = 8120.304840 C =10242.326078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C 0.083 3.917 4 O -0.387 6.387 5 C 0.070 3.930 6 H 0.106 0.894 7 C -0.163 4.163 8 C 0.536 3.464 9 O -0.575 6.575 10 N -0.651 5.651 11 C 0.107 3.893 12 C 0.094 3.906 13 N -0.268 5.268 14 C -0.015 4.015 15 C -0.040 4.040 16 C 0.240 3.760 17 N -0.749 5.749 18 C -0.236 4.236 19 H 0.063 0.937 20 C -0.057 4.057 21 N -0.980 5.980 22 Si 0.954 3.046 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.252 1.252 26 N -0.295 5.295 27 N -0.097 5.097 28 C 0.105 3.895 29 H 0.115 0.885 30 H 0.114 0.886 31 H 0.102 0.898 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.153 0.847 39 H 0.181 0.819 40 H 0.212 0.788 41 H 0.031 0.969 42 H 0.061 0.939 43 H 0.364 0.636 44 H 0.259 0.741 45 H 0.172 0.828 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.704 -1.502 29.858 31.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.197 4.197 3 C 0.008 3.992 4 O -0.306 6.306 5 C 0.009 3.991 6 H 0.124 0.876 7 C -0.220 4.220 8 C 0.326 3.674 9 O -0.453 6.453 10 N -0.389 5.389 11 C -0.016 4.016 12 C -0.007 4.007 13 N -0.062 5.062 14 C -0.166 4.166 15 C -0.178 4.178 16 C 0.112 3.888 17 N -0.395 5.395 18 C -0.366 4.366 19 H 0.081 0.919 20 C -0.249 4.249 21 N -0.630 5.630 22 Si 0.781 3.219 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.177 1.177 26 N -0.162 5.162 27 N -0.075 5.075 28 C -0.016 4.016 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.120 0.880 37 H 0.080 0.920 38 H 0.171 0.829 39 H 0.198 0.802 40 H 0.228 0.772 41 H 0.049 0.951 42 H 0.079 0.921 43 H 0.197 0.803 44 H 0.068 0.932 45 H 0.189 0.811 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.236 -2.301 30.169 31.110 hybrid contribution -0.699 0.369 -0.694 1.052 sum -7.935 -1.932 29.475 30.585 Atomic orbital electron populations 1.24065 0.94841 1.03624 0.97404 1.22751 0.96389 0.97871 1.02730 1.21826 0.88578 0.96911 0.91921 1.88025 1.44943 1.36593 1.61002 1.22046 0.87406 0.87448 1.02211 0.87602 1.22254 1.03097 0.98782 0.97858 1.20632 0.86672 0.83943 0.76153 1.90730 1.81177 1.21413 1.51964 1.50143 1.11152 1.08266 1.69322 1.23794 0.80156 0.95004 1.02632 1.23648 1.00917 1.01439 0.74697 1.47261 1.05121 1.44251 1.09603 1.23457 0.99646 1.06762 0.86771 1.22184 0.90259 1.07656 0.97690 1.18855 0.97543 0.88148 0.84262 1.42599 1.80402 1.03349 1.13140 1.19027 1.34483 0.93872 0.89257 0.91905 1.25427 1.01664 1.01044 0.96742 1.69871 1.53227 1.26919 1.13019 0.85430 0.77280 0.79973 0.79182 1.21403 1.21498 1.17700 1.75065 1.20644 1.16554 1.03919 1.78185 1.05185 1.20533 1.03619 1.24199 0.91254 0.79394 1.06792 0.86696 0.86757 0.87971 0.90137 0.91967 0.89687 0.92227 0.88027 0.92048 0.82920 0.80155 0.77173 0.95065 0.92147 0.80271 0.93179 0.81052 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 14.31 67.78 0.97 -1.13 16 2 C -0.18 -3.15 9.89 25.65 0.25 -2.90 16 3 C 0.08 1.41 6.16 71.24 0.44 1.84 16 4 O -0.39 -8.61 9.50 -129.94 -1.24 -9.84 16 5 C 0.07 1.08 2.97 29.85 0.09 1.17 16 6 H 0.11 1.23 7.79 -2.38 -0.02 1.21 16 7 C -0.16 -1.29 9.40 71.98 0.68 -0.61 16 8 C 0.54 11.12 7.46 87.66 0.65 11.77 16 9 O -0.57 -18.85 17.23 15.99 0.28 -18.58 16 10 N -0.65 -7.86 3.34 -837.12 -2.80 -10.66 16 11 C 0.11 1.07 8.63 86.48 0.75 1.82 16 12 C 0.09 0.77 5.19 46.76 0.24 1.01 16 13 N -0.27 -5.68 3.54 -331.96 -1.18 -6.86 16 14 C -0.01 -0.36 10.37 83.49 0.87 0.50 16 15 C -0.04 -1.37 6.62 41.60 0.28 -1.10 16 16 C 0.24 9.64 6.82 85.63 0.58 10.22 16 17 N -0.75 -35.89 5.40 -347.19 -1.87 -37.77 16 18 C -0.24 -13.51 10.47 84.03 0.88 -12.63 16 19 H 0.06 3.90 8.06 -2.91 -0.02 3.88 16 20 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 21 N -0.98 -62.47 13.97 21.65 0.30 -62.17 16 22 Si 0.95 45.54 27.73 68.60 1.90 47.44 16 23 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 25 H -0.25 -10.76 6.52 99.48 0.65 -10.12 16 26 N -0.29 -11.04 12.41 -48.60 -0.60 -11.64 16 27 N -0.10 -2.91 13.17 37.02 0.49 -2.42 16 28 C 0.11 0.27 6.06 86.49 0.52 0.80 16 29 H 0.11 1.21 8.06 -2.91 -0.02 1.19 16 30 H 0.11 1.09 7.90 -2.91 -0.02 1.07 16 31 H 0.10 2.04 8.06 -2.91 -0.02 2.02 16 32 H 0.08 0.94 7.59 -2.39 -0.02 0.92 16 33 H 0.06 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.08 0.51 7.87 -2.39 -0.02 0.49 16 35 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.10 0.15 6.14 -2.39 -0.01 0.14 16 37 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.18 0.22 8.14 -2.38 -0.02 0.20 16 40 H 0.21 3.77 7.20 -2.91 -0.02 3.75 16 41 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.36 17.04 5.52 -92.71 -0.51 16.52 16 44 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 45 H 0.17 -1.14 7.97 -2.39 -0.02 -1.16 16 46 H 0.11 0.22 6.90 -2.39 -0.02 0.21 16 Total: -1.00 -92.18 391.17 3.37 -88.80 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.42 Total: 15.80 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 7.67 Total: 7.88 kcal Atomic # 7 Polarization: -125.85 SS G_CDS: -5.66 Total: -131.51 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.96 Total: -28.42 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Total: -92.18 3.37 -88.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105380821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.070 kcal (2) G-P(sol) polarization free energy of solvation -92.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds