Wall clock time and date at job start Tue Mar 31 2020 18:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00385 * 2 1 4 4 O 1.42898 * 109.47134 * 134.99934 * 3 2 1 5 5 C 1.42901 * 113.99935 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47526 * 330.00498 * 5 4 3 7 7 C 1.53005 * 109.46852 * 90.00719 * 5 4 3 8 8 C 1.50701 * 109.47247 * 210.00347 * 5 4 3 9 9 O 1.21287 * 119.99673 * 0.02562 * 8 5 4 10 10 N 1.34775 * 120.00298 * 180.02562 * 8 5 4 11 11 C 1.46500 * 120.00137 * 179.97438 * 10 8 5 12 12 C 1.50702 * 109.46892 * 179.97438 * 11 10 8 13 13 C 1.35346 * 126.75165 * 94.71146 * 12 11 10 14 14 N 1.35317 * 106.17422 * 179.85105 * 13 12 11 15 15 C 1.46496 * 125.86747 * 180.18867 * 14 13 12 16 16 C 1.53946 * 113.74606 * 14.03777 * 15 14 13 17 17 N 1.47812 * 86.03732 * 222.08369 * 16 15 14 18 18 C 1.36933 * 134.45161 * 204.63555 * 17 16 15 19 19 H 1.08008 * 119.99830 * 173.34918 * 18 17 16 20 20 C 1.38807 * 120.00740 * 353.35430 * 18 17 16 21 21 N 1.31619 * 119.99574 * 5.06232 * 20 18 17 22 22 Si 1.86794 * 120.00510 * 185.05986 * 20 18 17 23 23 H 1.48496 * 109.47095 * 94.98666 * 22 20 18 24 24 H 1.48500 * 109.47505 * 214.98867 * 22 20 18 25 25 H 1.48506 * 109.46873 * 334.98784 * 22 20 18 26 26 C 1.47577 * 91.05178 * 24.54902 * 17 16 15 27 27 N 1.28716 * 108.26239 * 0.42089 * 14 13 12 28 28 N 1.28631 * 110.17974 * 359.73016 * 27 14 13 29 29 H 1.08006 * 119.99515 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00424 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99288 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46894 * 255.00340 * 3 2 1 33 33 H 1.09005 * 109.46985 * 15.00159 * 3 2 1 34 34 H 1.08998 * 109.46889 * 180.02562 * 7 5 4 35 35 H 1.09007 * 109.46683 * 299.99625 * 7 5 4 36 36 H 1.08992 * 109.47014 * 59.99742 * 7 5 4 37 37 H 0.96998 * 119.99445 * 359.97438 * 10 8 5 38 38 H 1.08996 * 109.46903 * 299.99857 * 11 10 8 39 39 H 1.08998 * 109.46596 * 60.00222 * 11 10 8 40 40 H 1.07997 * 126.91216 * 0.02562 * 13 12 11 41 41 H 1.09007 * 112.94563 * 145.62677 * 15 14 13 42 42 H 1.09004 * 113.76178 * 336.34967 * 16 15 14 43 43 H 1.09003 * 113.77191 * 107.74023 * 16 15 14 44 44 H 0.96997 * 120.00043 * 180.02562 * 21 20 18 45 45 H 1.09000 * 113.76846 * 221.15401 * 26 17 16 46 46 H 1.09002 * 113.87568 * 89.76390 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2411 0.9527 5 6 3.9086 2.4347 1.0320 6 1 3.9139 2.9309 0.0615 7 6 3.3045 3.3712 2.0804 8 6 5.3208 2.0850 1.4251 9 8 5.6276 0.9275 1.6178 10 7 6.2427 3.0584 1.5625 11 6 7.6154 2.7185 1.9452 12 6 8.4399 3.9772 2.0287 13 6 8.6894 4.7097 3.1392 14 7 9.4701 5.7414 2.7427 15 6 9.9977 6.8001 3.6070 16 6 9.8827 6.4881 5.1101 17 7 9.4660 7.8977 5.2661 18 6 9.5008 8.7996 6.2959 19 1 9.2227 9.8286 6.1221 20 6 9.8935 8.3914 7.5632 21 7 10.3274 7.1636 7.7540 22 14 9.8063 9.5847 8.9977 23 1 8.5233 9.3961 9.7211 24 1 10.9388 9.3294 9.9236 25 1 9.8875 10.9774 8.4886 26 6 8.9997 7.9431 3.8667 27 7 9.6654 5.6354 1.4749 28 7 9.0643 4.5936 1.0189 29 1 -0.5399 0.9354 0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 2.4756 1.4867 -0.9927 33 1 1.3856 2.1161 0.2660 34 1 3.9005 4.2818 2.1406 35 1 2.2830 3.6242 1.7960 36 1 3.2992 2.8751 3.0508 37 1 5.9973 3.9841 1.4080 38 1 7.6097 2.2224 2.9157 39 1 8.0461 2.0514 1.1985 40 1 8.3385 4.5093 4.1407 41 1 10.9875 7.1419 3.3043 42 1 9.0995 5.7692 5.3508 43 1 10.8360 6.2554 5.5848 44 1 10.6015 6.8782 8.6396 45 1 9.2494 8.8701 3.3504 46 1 7.9568 7.6531 3.7395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107240860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:17 Heat of formation + Delta-G solvation = 100.062653 kcal Electronic energy + Delta-G solvation = -27792.470705 eV Core-core repulsion = 23722.648764 eV Total energy + Delta-G solvation = -4069.821941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.11602 -40.12964 -38.42730 -38.10663 -35.26497 -34.41268 -33.47270 -32.22845 -31.81178 -30.79094 -28.00793 -26.95222 -26.55468 -25.32770 -24.45786 -23.99306 -21.97416 -21.16763 -20.75495 -20.24745 -19.67123 -17.86507 -17.53387 -17.23174 -16.69857 -16.38861 -15.99863 -15.45839 -15.44369 -15.16123 -14.96390 -14.76208 -14.20528 -14.05871 -13.72216 -13.43233 -13.17902 -13.13605 -12.95301 -12.67783 -12.42496 -12.25099 -12.15698 -11.88140 -11.82012 -11.42825 -11.28848 -11.21060 -11.01120 -10.98415 -10.57562 -10.51691 -10.25408 -9.96827 -9.88152 -9.68618 -9.58425 -9.22643 -9.12714 -9.07691 -7.28672 -6.09764 -3.44461 1.70907 1.79120 2.32826 2.46003 2.59870 2.98956 3.23624 3.29548 3.31448 3.69952 4.18893 4.30785 4.39201 4.54795 4.60231 4.65674 4.67990 4.69818 4.77979 4.89220 4.95668 5.07979 5.11356 5.17096 5.23030 5.33402 5.35471 5.47479 5.49598 5.57861 5.71670 5.76871 6.01062 6.07688 6.11746 6.17925 6.19097 6.24017 6.25992 6.50188 6.72834 6.73665 6.98405 7.13280 7.32109 7.63697 8.05108 8.69242 8.71530 9.37777 10.15804 11.07953 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.002026 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.139708 B =13820.281740 C =14939.977287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.148 4.148 3 C 0.085 3.915 4 O -0.353 6.353 5 C 0.072 3.928 6 H 0.088 0.912 7 C -0.172 4.172 8 C 0.516 3.484 9 O -0.520 6.520 10 N -0.721 5.721 11 C 0.217 3.783 12 C -0.063 4.063 13 C -0.014 4.014 14 N -0.265 5.265 15 C 0.076 3.924 16 C 0.166 3.834 17 N -0.598 5.598 18 C -0.235 4.235 19 H 0.088 0.912 20 C 0.001 3.999 21 N -0.917 5.917 22 Si 0.918 3.082 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.267 5.267 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.402 0.598 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.191 0.809 41 H 0.132 0.868 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.260 0.740 45 H 0.062 0.938 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.201 -8.350 -13.523 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.166 4.166 3 C 0.009 3.991 4 O -0.271 6.271 5 C 0.010 3.990 6 H 0.106 0.894 7 C -0.230 4.230 8 C 0.301 3.699 9 O -0.394 6.394 10 N -0.375 5.375 11 C 0.092 3.908 12 C -0.202 4.202 13 C -0.167 4.167 14 N -0.057 5.057 15 C -0.026 4.026 16 C 0.039 3.961 17 N -0.325 5.325 18 C -0.361 4.361 19 H 0.105 0.895 20 C -0.197 4.197 21 N -0.562 5.562 22 Si 0.747 3.253 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.203 1.203 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.237 0.763 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.208 0.792 41 H 0.150 0.850 42 H 0.061 0.939 43 H 0.106 0.894 44 H 0.069 0.931 45 H 0.080 0.920 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.146 -8.595 -14.149 21.140 hybrid contribution -0.687 0.942 1.666 2.033 sum -13.833 -7.653 -12.484 20.144 Atomic orbital electron populations 1.23840 0.95501 1.02306 1.00162 1.22730 0.95578 0.98240 1.00096 1.21674 0.88954 0.96183 0.92302 1.88077 1.43852 1.35074 1.60071 1.21885 0.89475 0.87337 1.00280 0.89403 1.22260 1.01857 0.98956 0.99910 1.20302 0.86327 0.85640 0.77676 1.90737 1.80713 1.19247 1.48726 1.45974 1.10028 1.10315 1.71194 1.19283 0.78608 0.90828 1.02094 1.21708 1.06680 1.01361 0.90482 1.23518 0.99931 0.90998 1.02299 1.47920 1.31398 1.19174 1.07218 1.25325 1.00091 0.86449 0.90720 1.22695 1.00900 0.88154 0.84310 1.45648 1.69866 1.08979 1.07966 1.19001 1.41067 0.89920 0.86155 0.89456 1.24883 1.00577 0.96813 0.97443 1.69777 1.47165 1.16822 1.22416 0.86021 0.77513 0.79843 0.81913 1.21272 1.21403 1.20271 1.22930 0.95130 0.95177 0.87513 1.78275 1.20315 1.15348 0.92835 1.75022 1.09549 1.02345 1.26464 0.88434 0.87722 0.86358 0.92089 0.92516 0.90724 0.91216 0.90786 0.76314 0.89473 0.89658 0.79171 0.85044 0.93889 0.89415 0.93051 0.92018 0.93999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.11 14.31 29.01 0.42 -0.69 16 2 C -0.15 -1.15 9.89 -36.03 -0.36 -1.51 16 3 C 0.09 0.67 6.16 36.00 0.22 0.89 16 4 O -0.35 -3.93 9.50 -55.14 -0.52 -4.46 16 5 C 0.07 0.66 3.14 -27.88 -0.09 0.57 16 6 H 0.09 0.59 7.79 -51.93 -0.40 0.19 16 7 C -0.17 -1.27 9.42 37.16 0.35 -0.92 16 8 C 0.52 6.20 7.23 -10.99 -0.08 6.12 16 9 O -0.52 -8.45 16.50 -14.36 -0.24 -8.69 16 10 N -0.72 -7.55 5.44 -61.47 -0.33 -7.89 16 11 C 0.22 2.54 6.23 -5.19 -0.03 2.50 16 12 C -0.06 -0.86 6.62 -82.78 -0.55 -1.41 16 13 C -0.01 -0.19 10.72 -17.05 -0.18 -0.37 16 14 N -0.26 -4.17 3.54 -56.30 -0.20 -4.37 16 15 C 0.08 1.27 5.14 -70.14 -0.36 0.91 16 16 C 0.17 3.33 6.81 -2.84 -0.02 3.31 16 17 N -0.60 -13.50 3.70 -177.87 -0.66 -14.16 16 18 C -0.23 -5.95 10.69 -15.06 -0.16 -6.11 16 19 H 0.09 2.14 7.83 -52.48 -0.41 1.73 16 20 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 21 N -0.92 -24.74 11.51 55.49 0.64 -24.10 16 22 Si 0.92 20.44 29.56 -169.99 -5.02 15.42 16 23 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 C 0.12 2.15 8.74 -2.97 -0.03 2.12 16 27 N -0.09 -1.50 13.16 60.35 0.79 -0.70 16 28 N -0.27 -4.30 12.41 33.29 0.41 -3.88 16 29 H 0.10 0.49 7.90 -52.48 -0.41 0.08 16 30 H 0.10 0.52 8.06 -52.49 -0.42 0.10 16 31 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 32 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 33 H 0.06 0.35 7.59 -51.93 -0.39 -0.04 16 34 H 0.07 0.46 7.56 -51.93 -0.39 0.06 16 35 H 0.07 0.42 7.87 -51.93 -0.41 0.01 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.40 3.53 7.88 -40.82 -0.32 3.21 16 38 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.19 2.36 6.74 -52.49 -0.35 2.00 16 41 H 0.13 2.13 8.14 -51.93 -0.42 1.70 16 42 H 0.04 0.84 6.31 -51.93 -0.33 0.52 16 43 H 0.09 1.96 7.37 -51.93 -0.38 1.57 16 44 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -31.89 393.45 -6.91 -38.80 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.75 Total: 2.77 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -0.96 Total: 5.33 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.65 Total: -55.10 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: -0.76 Total: -13.15 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.89 -6.91 -38.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107240860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.860 kcal (2) G-P(sol) polarization free energy of solvation -31.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds