Wall clock time and date at job start Tue Mar 31 2020 18:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 120.00385 * 2 1 4 4 O 1.42898 * 109.47134 * 134.99934 * 3 2 1 5 5 C 1.42901 * 113.99935 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47526 * 330.00498 * 5 4 3 7 7 C 1.53005 * 109.46852 * 90.00719 * 5 4 3 8 8 C 1.50701 * 109.47247 * 210.00347 * 5 4 3 9 9 O 1.21287 * 119.99673 * 0.02562 * 8 5 4 10 10 N 1.34775 * 120.00298 * 180.02562 * 8 5 4 11 11 C 1.46500 * 120.00137 * 179.97438 * 10 8 5 12 12 C 1.50702 * 109.46892 * 179.97438 * 11 10 8 13 13 C 1.35346 * 126.75165 * 94.71146 * 12 11 10 14 14 N 1.35317 * 106.17422 * 179.85105 * 13 12 11 15 15 C 1.46496 * 125.86747 * 180.18867 * 14 13 12 16 16 C 1.53946 * 113.74606 * 14.03777 * 15 14 13 17 17 N 1.47812 * 86.03732 * 222.08369 * 16 15 14 18 18 C 1.36933 * 134.45161 * 204.63555 * 17 16 15 19 19 H 1.08008 * 119.99830 * 173.34918 * 18 17 16 20 20 C 1.38807 * 120.00740 * 353.35430 * 18 17 16 21 21 N 1.31619 * 119.99574 * 5.06232 * 20 18 17 22 22 Si 1.86794 * 120.00510 * 185.05986 * 20 18 17 23 23 H 1.48496 * 109.47095 * 94.98666 * 22 20 18 24 24 H 1.48500 * 109.47505 * 214.98867 * 22 20 18 25 25 H 1.48506 * 109.46873 * 334.98784 * 22 20 18 26 26 C 1.47577 * 91.05178 * 24.54902 * 17 16 15 27 27 N 1.28716 * 108.26239 * 0.42089 * 14 13 12 28 28 N 1.28631 * 110.17974 * 359.73016 * 27 14 13 29 29 H 1.08006 * 119.99515 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00424 * 180.02562 * 1 2 3 31 31 H 1.08005 * 119.99288 * 180.02562 * 2 1 3 32 32 H 1.09001 * 109.46894 * 255.00340 * 3 2 1 33 33 H 1.09005 * 109.46985 * 15.00159 * 3 2 1 34 34 H 1.08998 * 109.46889 * 180.02562 * 7 5 4 35 35 H 1.09007 * 109.46683 * 299.99625 * 7 5 4 36 36 H 1.08992 * 109.47014 * 59.99742 * 7 5 4 37 37 H 0.96998 * 119.99445 * 359.97438 * 10 8 5 38 38 H 1.08996 * 109.46903 * 299.99857 * 11 10 8 39 39 H 1.08998 * 109.46596 * 60.00222 * 11 10 8 40 40 H 1.07997 * 126.91216 * 0.02562 * 13 12 11 41 41 H 1.09007 * 112.94563 * 145.62677 * 15 14 13 42 42 H 1.09004 * 113.76178 * 336.34967 * 16 15 14 43 43 H 1.09003 * 113.77191 * 107.74023 * 16 15 14 44 44 H 0.96997 * 120.00043 * 180.02562 * 21 20 18 45 45 H 1.09000 * 113.76846 * 221.15401 * 26 17 16 46 46 H 1.09002 * 113.87568 * 89.76390 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2411 0.9527 5 6 3.9086 2.4347 1.0320 6 1 3.9139 2.9309 0.0615 7 6 3.3045 3.3712 2.0804 8 6 5.3208 2.0850 1.4251 9 8 5.6276 0.9275 1.6178 10 7 6.2427 3.0584 1.5625 11 6 7.6154 2.7185 1.9452 12 6 8.4399 3.9772 2.0287 13 6 8.6894 4.7097 3.1392 14 7 9.4701 5.7414 2.7427 15 6 9.9977 6.8001 3.6070 16 6 9.8827 6.4881 5.1101 17 7 9.4660 7.8977 5.2661 18 6 9.5008 8.7996 6.2959 19 1 9.2227 9.8286 6.1221 20 6 9.8935 8.3914 7.5632 21 7 10.3274 7.1636 7.7540 22 14 9.8063 9.5847 8.9977 23 1 8.5233 9.3961 9.7211 24 1 10.9388 9.3294 9.9236 25 1 9.8875 10.9774 8.4886 26 6 8.9997 7.9431 3.8667 27 7 9.6654 5.6354 1.4749 28 7 9.0643 4.5936 1.0189 29 1 -0.5399 0.9354 0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 2.4756 1.4867 -0.9927 33 1 1.3856 2.1161 0.2660 34 1 3.9005 4.2818 2.1406 35 1 2.2830 3.6242 1.7960 36 1 3.2992 2.8751 3.0508 37 1 5.9973 3.9841 1.4080 38 1 7.6097 2.2224 2.9157 39 1 8.0461 2.0514 1.1985 40 1 8.3385 4.5093 4.1407 41 1 10.9875 7.1419 3.3043 42 1 9.0995 5.7692 5.3508 43 1 10.8360 6.2554 5.5848 44 1 10.6015 6.8782 8.6396 45 1 9.2494 8.8701 3.3504 46 1 7.9568 7.6531 3.7395 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107240860.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:16 Heat of formation + Delta-G solvation = 78.790456 kcal Electronic energy + Delta-G solvation = -27793.393136 eV Core-core repulsion = 23722.648764 eV Total energy + Delta-G solvation = -4070.744372 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.35275 -41.02671 -39.93541 -38.87984 -36.32322 -35.03621 -34.91664 -33.70210 -32.90017 -31.70149 -29.70010 -27.97749 -27.13829 -26.82382 -26.01277 -24.77710 -23.41306 -22.35780 -21.55913 -21.13574 -20.87506 -19.06393 -18.67506 -18.25559 -17.95522 -17.41825 -16.95932 -16.95036 -16.33684 -16.25712 -16.01420 -15.73143 -15.70622 -14.97357 -14.83074 -14.55450 -14.31086 -14.11328 -13.73166 -13.72303 -13.57468 -13.39525 -13.37838 -12.98509 -12.95201 -12.78809 -12.62890 -12.47995 -12.40968 -12.09334 -11.83770 -11.78847 -11.73923 -11.25796 -11.01635 -10.90327 -10.73826 -10.28744 -10.21357 -10.17610 -9.08948 -8.02118 -5.36304 0.56602 1.13263 1.28546 1.29998 1.48168 1.50558 1.54201 1.57819 2.11612 2.43221 3.00526 3.06972 3.12253 3.32964 3.33027 3.64802 3.74569 3.90764 3.92162 3.99298 4.02076 4.11600 4.16747 4.23376 4.42661 4.48102 4.57488 4.58675 4.60471 4.69507 4.71290 4.80669 4.92321 5.00747 5.02225 5.04986 5.08889 5.20533 5.27826 5.38114 5.66703 5.67493 5.71379 5.77261 6.10106 6.48542 6.80557 7.15694 7.46099 7.49062 8.34729 9.15302 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.002026 C = 0.001874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.139708 B =13820.281740 C =14939.977287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.082 3.918 4 O -0.385 6.385 5 C 0.073 3.927 6 H 0.117 0.883 7 C -0.167 4.167 8 C 0.514 3.486 9 O -0.569 6.569 10 N -0.709 5.709 11 C 0.220 3.780 12 C -0.049 4.049 13 C -0.012 4.012 14 N -0.268 5.268 15 C 0.104 3.896 16 C 0.168 3.832 17 N -0.627 5.627 18 C -0.239 4.239 19 H 0.092 0.908 20 C -0.054 4.054 21 N -0.947 5.947 22 Si 0.977 3.023 23 H -0.288 1.288 24 H -0.296 1.296 25 H -0.266 1.266 26 C 0.126 3.874 27 N -0.107 5.107 28 N -0.280 5.280 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.413 0.587 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.207 0.793 41 H 0.139 0.861 42 H 0.048 0.952 43 H 0.060 0.940 44 H 0.253 0.747 45 H 0.076 0.924 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.900 -7.240 -14.469 22.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.195 4.195 3 C 0.006 3.994 4 O -0.304 6.304 5 C 0.012 3.988 6 H 0.134 0.866 7 C -0.225 4.225 8 C 0.300 3.700 9 O -0.447 6.447 10 N -0.363 5.363 11 C 0.094 3.906 12 C -0.188 4.188 13 C -0.165 4.165 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.041 3.959 17 N -0.354 5.354 18 C -0.367 4.367 19 H 0.109 0.891 20 C -0.249 4.249 21 N -0.594 5.594 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.190 1.190 26 C 0.000 4.000 27 N -0.086 5.086 28 N -0.146 5.146 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.075 0.925 37 H 0.250 0.750 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.224 0.776 41 H 0.156 0.844 42 H 0.066 0.934 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.863 -7.443 -15.150 22.490 hybrid contribution -0.223 0.531 1.854 1.942 sum -15.086 -6.913 -13.295 21.263 Atomic orbital electron populations 1.24056 0.94934 1.03520 0.97712 1.22769 0.96312 0.97970 1.02434 1.21850 0.88592 0.96768 0.92178 1.88042 1.44886 1.36333 1.61175 1.22000 0.87408 0.87233 1.02150 0.86577 1.22250 1.03125 0.98726 0.98362 1.20918 0.87546 0.84943 0.76551 1.90713 1.81675 1.21257 1.51095 1.45851 1.09311 1.10760 1.70385 1.19247 0.79029 0.89822 1.02453 1.21855 1.05942 1.01278 0.89714 1.23829 0.99209 0.90384 1.03097 1.47716 1.31879 1.19407 1.07053 1.24727 1.00170 0.85988 0.88944 1.22569 0.99571 0.87416 0.86345 1.45879 1.70785 1.09593 1.09191 1.19336 1.39527 0.90766 0.87023 0.89076 1.25606 1.01246 0.98295 0.99710 1.69924 1.48860 1.18359 1.22256 0.85086 0.76775 0.78646 0.78980 1.21449 1.22234 1.19048 1.23021 0.95799 0.96251 0.84962 1.78284 1.21202 1.16020 0.93053 1.75012 1.09941 1.02480 1.27214 0.86910 0.86780 0.87790 0.91212 0.90534 0.89240 0.89376 0.92531 0.75022 0.88714 0.90215 0.77620 0.84370 0.93429 0.92216 0.93785 0.90579 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 14.31 67.78 0.97 -0.78 16 2 C -0.18 -2.63 9.89 25.64 0.25 -2.38 16 3 C 0.08 1.17 6.16 71.24 0.44 1.61 16 4 O -0.39 -8.32 9.50 -129.94 -1.23 -9.55 16 5 C 0.07 1.22 3.14 29.85 0.09 1.31 16 6 H 0.12 1.25 7.79 -2.39 -0.02 1.23 16 7 C -0.17 -2.09 9.42 71.98 0.68 -1.41 16 8 C 0.51 11.91 7.23 87.66 0.63 12.54 16 9 O -0.57 -18.70 16.50 15.99 0.26 -18.43 16 10 N -0.71 -13.74 5.44 -466.79 -2.54 -16.28 16 11 C 0.22 4.87 6.23 85.63 0.53 5.41 16 12 C -0.05 -1.24 6.62 41.60 0.28 -0.97 16 13 C -0.01 -0.31 10.72 83.49 0.89 0.58 16 14 N -0.27 -7.99 3.54 -332.03 -1.18 -9.16 16 15 C 0.10 3.33 5.14 46.75 0.24 3.57 16 16 C 0.17 6.64 6.81 86.44 0.59 7.23 16 17 N -0.63 -27.79 3.70 -716.67 -2.65 -30.44 16 18 C -0.24 -11.95 10.69 84.03 0.90 -11.05 16 19 H 0.09 4.36 7.83 -2.91 -0.02 4.33 16 20 C -0.05 -2.80 5.50 84.86 0.47 -2.33 16 21 N -0.95 -51.76 11.51 21.65 0.25 -51.51 16 22 Si 0.98 41.97 29.56 68.60 2.03 44.00 16 23 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 24 H -0.30 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 26 C 0.13 4.26 8.74 86.49 0.76 5.01 16 27 N -0.11 -3.43 13.16 37.02 0.49 -2.95 16 28 N -0.28 -8.56 12.41 -48.60 -0.60 -9.17 16 29 H 0.11 0.84 7.90 -2.91 -0.02 0.81 16 30 H 0.11 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.10 1.78 8.06 -2.91 -0.02 1.75 16 32 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.08 0.75 7.59 -2.38 -0.02 0.73 16 34 H 0.09 0.83 7.56 -2.39 -0.02 0.82 16 35 H 0.09 0.79 7.87 -2.38 -0.02 0.77 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.41 6.28 7.88 -92.71 -0.73 5.55 16 38 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.21 4.69 6.74 -2.91 -0.02 4.67 16 41 H 0.14 4.28 8.14 -2.38 -0.02 4.26 16 42 H 0.05 1.84 6.31 -2.38 -0.02 1.82 16 43 H 0.06 2.71 7.37 -2.39 -0.02 2.69 16 44 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 45 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -69.05 393.45 2.81 -66.24 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.27 Total: 18.93 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 7.72 Total: 18.33 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -6.23 Total: -119.51 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.97 Total: -27.98 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -69.05 2.81 -66.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107240860.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.026 kcal (2) G-P(sol) polarization free energy of solvation -69.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds