Wall clock time and date at job start Tue Mar 31 2020 18:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46745 * 2 1 4 4 C 1.34257 * 125.75046 * 125.34579 * 3 2 1 5 5 C 1.38048 * 107.41598 * 180.15940 * 4 3 2 6 6 C 1.47429 * 126.41366 * 179.83866 * 5 4 3 7 7 O 1.21599 * 120.00505 * 26.89321 * 6 5 4 8 8 N 1.34782 * 119.99527 * 207.17155 * 6 5 4 9 9 C 1.47077 * 120.88276 * 5.68414 * 8 6 5 10 10 C 1.53692 * 108.27953 * 128.75525 * 9 8 6 11 11 N 1.46898 * 109.25433 * 54.08317 * 10 9 8 12 12 C 1.46904 * 111.00087 * 172.60959 * 11 10 9 13 13 C 1.50697 * 109.46934 * 294.30161 * 12 11 10 14 14 O 1.21291 * 119.99871 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99950 * 180.02562 * 13 12 11 16 16 C 1.37095 * 119.99923 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99880 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99945 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99748 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00217 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46923 * 60.00064 * 20 18 16 22 22 H 1.48500 * 109.47129 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47063 * 300.00116 * 20 18 16 24 24 C 1.46906 * 111.26884 * 296.75715 * 11 10 9 25 25 C 1.47073 * 120.87885 * 185.96465 * 8 6 5 26 26 C 1.41284 * 107.16661 * 359.56672 * 5 4 3 27 27 N 1.30446 * 108.02946 * 0.26830 * 26 5 4 28 28 H 1.09001 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47133 * 299.99962 * 1 2 3 30 30 H 1.09000 * 109.47271 * 59.99614 * 1 2 3 31 31 H 1.08994 * 109.46966 * 239.99782 * 2 1 3 32 32 H 1.08995 * 109.46723 * 119.99677 * 2 1 3 33 33 H 1.08002 * 126.29538 * 0.02562 * 4 3 2 34 34 H 1.09002 * 109.63144 * 248.52783 * 9 8 6 35 35 H 1.09008 * 109.62845 * 9.09988 * 9 8 6 36 36 H 1.09004 * 109.64794 * 294.08274 * 10 9 8 37 37 H 1.08993 * 109.42340 * 173.94757 * 10 9 8 38 38 H 1.08996 * 109.47021 * 54.30063 * 12 11 10 39 39 H 1.09003 * 109.46960 * 174.29862 * 12 11 10 40 40 H 0.96997 * 119.99571 * 359.97438 * 15 13 12 41 41 H 0.97005 * 119.99528 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.48987 * 303.14628 * 24 11 10 43 43 H 1.09004 * 109.49294 * 183.06645 * 24 11 10 44 44 H 1.08999 * 109.63099 * 350.89568 * 25 8 6 45 45 H 1.09006 * 109.63142 * 111.47630 * 25 8 6 46 46 H 1.08000 * 125.98729 * 180.30196 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8740 1.9108 0.8887 5 6 3.0710 3.2310 0.5367 6 6 3.9328 4.2033 1.2334 7 8 4.8937 3.8170 1.8707 8 7 3.6523 5.5200 1.1687 9 6 2.4253 5.9992 0.5144 10 6 1.7019 6.9485 1.4826 11 7 2.6299 8.0039 1.9101 12 6 1.9333 9.0307 2.6966 13 6 0.9416 9.7492 1.8183 14 8 0.8269 9.4370 0.6519 15 7 0.1830 10.7395 2.3287 16 6 -0.7196 11.3927 1.5298 17 1 -0.8223 11.1142 0.4914 18 6 -1.5020 12.4132 2.0561 19 7 -1.3765 12.7525 3.3195 20 14 -2.7313 13.3039 0.9675 21 1 -3.7199 12.3304 0.4381 22 1 -3.4350 14.3422 1.7624 23 1 -2.0157 13.9474 -0.1634 24 6 3.7632 7.4455 2.6597 25 6 4.5680 6.5161 1.7450 26 6 2.2971 3.4740 -0.6201 27 7 1.6763 2.3694 -0.9300 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.3237 1.3987 1.7266 34 1 2.6826 6.5315 -0.4014 35 1 1.7806 5.1521 0.2798 36 1 1.3584 6.3912 2.3542 37 1 0.8470 7.3985 0.9780 38 1 1.4080 8.5584 3.5266 39 1 2.6590 9.7452 3.0852 40 1 0.2751 10.9893 3.2614 41 1 -1.9231 13.4647 3.6870 42 1 3.3910 6.8813 3.5148 43 1 4.4031 8.2559 3.0088 44 1 5.3407 6.0110 2.3247 45 1 5.0274 7.0972 0.9454 46 1 2.2315 4.4102 -1.1546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112721802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:04 Heat of formation + Delta-G solvation = 33.740482 kcal Electronic energy + Delta-G solvation = -28736.099874 eV Core-core repulsion = 24663.401988 eV Total energy + Delta-G solvation = -4072.697886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.70349 -39.81971 -38.51358 -37.13094 -35.02025 -34.37194 -33.74086 -31.35094 -31.25184 -30.84233 -29.79359 -28.61826 -25.81328 -24.69439 -24.03141 -23.45705 -22.60959 -20.98776 -20.73088 -19.31113 -19.08797 -17.89037 -17.52799 -16.54443 -16.16839 -15.97896 -15.76972 -15.23555 -15.09713 -14.79286 -14.62578 -14.46946 -14.34132 -13.87952 -13.75619 -13.64525 -13.61576 -13.13189 -12.95213 -12.68803 -12.58938 -12.24649 -11.92353 -11.89631 -11.57780 -11.51895 -11.23174 -11.21233 -11.10571 -10.98595 -10.77934 -10.44577 -10.21951 -9.87243 -9.76836 -9.47175 -8.95626 -8.73041 -8.33296 -7.98431 -7.87106 -6.42249 -3.83122 1.34901 1.99806 2.03584 2.97783 3.19571 3.25577 3.28137 3.30090 3.88824 3.97080 4.03975 4.23677 4.43950 4.47196 4.56048 4.68983 4.78656 4.91870 5.05627 5.09784 5.13694 5.17583 5.23488 5.28980 5.35174 5.38102 5.44944 5.49081 5.59749 5.67009 5.77450 5.83435 5.89483 5.93234 6.13987 6.18022 6.25180 6.27644 6.53660 6.56969 7.17982 7.29408 7.34170 7.48047 7.54454 8.05402 8.21358 8.60829 9.17215 9.53684 10.05057 10.75358 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.002421 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.910231 B =11562.133310 C =12941.591559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 N -0.362 5.362 4 C 0.122 3.878 5 C -0.290 4.290 6 C 0.597 3.403 7 O -0.557 6.557 8 N -0.607 5.607 9 C 0.104 3.896 10 C 0.040 3.960 11 N -0.515 5.515 12 C 0.046 3.954 13 C 0.444 3.556 14 O -0.578 6.578 15 N -0.563 5.563 16 C -0.299 4.299 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.930 3.070 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.041 3.959 25 C 0.121 3.879 26 C 0.077 3.923 27 N -0.293 5.293 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.185 0.815 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.026 0.974 37 H 0.115 0.885 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.034 0.966 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.356 -22.310 -1.525 23.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.006 3.994 3 N -0.142 5.142 4 C -0.029 4.029 5 C -0.305 4.305 6 C 0.386 3.614 7 O -0.437 6.437 8 N -0.339 5.339 9 C -0.019 4.019 10 C -0.089 4.089 11 N -0.239 5.239 12 C -0.085 4.085 13 C 0.229 3.771 14 O -0.462 6.462 15 N -0.200 5.200 16 C -0.428 4.428 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.088 4.088 25 C -0.002 4.002 26 C -0.110 4.110 27 N -0.113 5.113 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.202 0.798 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.045 0.955 37 H 0.133 0.867 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.053 0.947 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.095 0.905 46 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 6.987 -23.066 -3.106 24.300 hybrid contribution -0.401 0.816 1.503 1.756 sum 6.586 -22.250 -1.604 23.260 Atomic orbital electron populations 1.22065 0.93294 1.03115 1.03976 1.21820 0.96523 0.76888 1.04171 1.48652 1.34109 1.10664 1.20733 1.22909 0.92013 0.93291 0.94727 1.20223 1.11512 0.95040 1.03677 1.17271 0.83462 0.81322 0.79329 1.90736 1.30272 1.79025 1.43634 1.47995 1.23228 1.05198 1.57504 1.22420 0.85227 0.97754 0.96496 1.22726 0.96698 0.91655 0.97787 1.61524 1.09541 1.12419 1.40445 1.21851 0.97164 0.94829 0.94647 1.19719 0.84694 0.83918 0.88766 1.90472 1.70761 1.67626 1.17383 1.41871 1.34303 1.30930 1.12897 1.19642 1.13958 1.13713 0.95530 0.87925 1.25264 0.98830 0.97549 0.96302 1.69608 1.41183 1.30869 1.12660 0.85923 0.80082 0.78853 0.79390 1.19922 1.21014 1.19870 1.22508 0.93873 0.97685 0.94766 1.21689 0.92068 0.88972 0.97440 1.24392 0.93779 0.97430 0.95392 1.77186 1.23987 0.97024 1.13107 0.90478 0.91861 0.90794 0.89316 0.88323 0.79799 0.89944 0.88716 0.95538 0.86703 0.93510 0.89197 0.77491 0.91823 0.94731 0.89539 0.88805 0.90544 0.78599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.09 37.16 0.37 -0.51 16 2 C 0.13 0.67 7.21 -4.04 -0.03 0.64 16 3 N -0.36 -3.34 3.65 -60.81 -0.22 -3.56 16 4 C 0.12 1.19 11.35 -16.56 -0.19 1.00 16 5 C -0.29 -3.46 5.59 -105.07 -0.59 -4.05 16 6 C 0.60 8.33 7.64 -12.52 -0.10 8.24 16 7 O -0.56 -9.19 16.46 5.28 0.09 -9.10 16 8 N -0.61 -8.05 3.00 -173.45 -0.52 -8.57 16 9 C 0.10 1.34 5.31 -3.37 -0.02 1.32 16 10 C 0.04 0.62 5.27 -3.47 -0.02 0.60 16 11 N -0.51 -8.29 4.37 -235.46 -1.03 -9.32 16 12 C 0.05 0.80 5.45 -4.97 -0.03 0.78 16 13 C 0.44 10.11 7.44 -10.98 -0.08 10.03 16 14 O -0.58 -14.82 13.91 5.55 0.08 -14.74 16 15 N -0.56 -13.97 5.29 -10.96 -0.06 -14.03 16 16 C -0.30 -8.17 9.68 -14.94 -0.14 -8.31 16 17 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 19 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 20 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C 0.04 0.53 5.62 -3.70 -0.02 0.51 16 25 C 0.12 1.53 6.61 -3.61 -0.02 1.51 16 26 C 0.08 0.86 9.60 -16.98 -0.16 0.70 16 27 N -0.29 -3.36 12.33 30.86 0.38 -2.98 16 28 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.26 8.06 -51.93 -0.42 -0.15 16 33 H 0.19 1.34 8.06 -52.49 -0.42 0.91 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.09 4.24 -51.92 -0.22 0.87 16 36 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.12 2.13 5.77 -51.93 -0.30 1.83 16 38 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 39 H 0.09 1.41 7.97 -51.93 -0.41 0.99 16 40 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 41 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 42 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.99 7.99 -51.93 -0.41 0.58 16 44 H 0.09 1.18 7.04 -51.93 -0.37 0.81 16 45 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.20 1.87 6.30 -52.49 -0.33 1.54 16 LS Contribution 377.33 15.07 5.69 5.69 Total: -1.00 -34.14 377.33 -7.54 -41.68 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -6.52 Total: 9.77 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -1.12 Total: 12.95 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.72 Total: -62.04 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: 0.16 Total: -23.84 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.14 -7.54 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112721802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.419 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds