Wall clock time and date at job start Tue Mar 31 2020 18:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46503 * 109.46745 * 2 1 4 4 C 1.34257 * 125.75046 * 125.34579 * 3 2 1 5 5 C 1.38048 * 107.41598 * 180.15940 * 4 3 2 6 6 C 1.47429 * 126.41366 * 179.83866 * 5 4 3 7 7 O 1.21599 * 120.00505 * 26.89321 * 6 5 4 8 8 N 1.34782 * 119.99527 * 207.17155 * 6 5 4 9 9 C 1.47077 * 120.88276 * 5.68414 * 8 6 5 10 10 C 1.53692 * 108.27953 * 128.75525 * 9 8 6 11 11 N 1.46898 * 109.25433 * 54.08317 * 10 9 8 12 12 C 1.46904 * 111.00087 * 172.60959 * 11 10 9 13 13 C 1.50697 * 109.46934 * 294.30161 * 12 11 10 14 14 O 1.21291 * 119.99871 * 359.97438 * 13 12 11 15 15 N 1.34781 * 119.99950 * 180.02562 * 13 12 11 16 16 C 1.37095 * 119.99923 * 180.02562 * 15 13 12 17 17 H 1.08004 * 119.99880 * 359.97438 * 16 15 13 18 18 C 1.38947 * 119.99945 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99748 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00217 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46923 * 60.00064 * 20 18 16 22 22 H 1.48500 * 109.47129 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47063 * 300.00116 * 20 18 16 24 24 C 1.46906 * 111.26884 * 296.75715 * 11 10 9 25 25 C 1.47073 * 120.87885 * 185.96465 * 8 6 5 26 26 C 1.41284 * 107.16661 * 359.56672 * 5 4 3 27 27 N 1.30446 * 108.02946 * 0.26830 * 26 5 4 28 28 H 1.09001 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47133 * 299.99962 * 1 2 3 30 30 H 1.09000 * 109.47271 * 59.99614 * 1 2 3 31 31 H 1.08994 * 109.46966 * 239.99782 * 2 1 3 32 32 H 1.08995 * 109.46723 * 119.99677 * 2 1 3 33 33 H 1.08002 * 126.29538 * 0.02562 * 4 3 2 34 34 H 1.09002 * 109.63144 * 248.52783 * 9 8 6 35 35 H 1.09008 * 109.62845 * 9.09988 * 9 8 6 36 36 H 1.09004 * 109.64794 * 294.08274 * 10 9 8 37 37 H 1.08993 * 109.42340 * 173.94757 * 10 9 8 38 38 H 1.08996 * 109.47021 * 54.30063 * 12 11 10 39 39 H 1.09003 * 109.46960 * 174.29862 * 12 11 10 40 40 H 0.96997 * 119.99571 * 359.97438 * 15 13 12 41 41 H 0.97005 * 119.99528 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.48987 * 303.14628 * 24 11 10 43 43 H 1.09004 * 109.49294 * 183.06645 * 24 11 10 44 44 H 1.08999 * 109.63099 * 350.89568 * 25 8 6 45 45 H 1.09006 * 109.63142 * 111.47630 * 25 8 6 46 46 H 1.08000 * 125.98729 * 180.30196 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.8740 1.9108 0.8887 5 6 3.0710 3.2310 0.5367 6 6 3.9328 4.2033 1.2334 7 8 4.8937 3.8170 1.8707 8 7 3.6523 5.5200 1.1687 9 6 2.4253 5.9992 0.5144 10 6 1.7019 6.9485 1.4826 11 7 2.6299 8.0039 1.9101 12 6 1.9333 9.0307 2.6966 13 6 0.9416 9.7492 1.8183 14 8 0.8269 9.4370 0.6519 15 7 0.1830 10.7395 2.3287 16 6 -0.7196 11.3927 1.5298 17 1 -0.8223 11.1142 0.4914 18 6 -1.5020 12.4132 2.0561 19 7 -1.3765 12.7525 3.3195 20 14 -2.7313 13.3039 0.9675 21 1 -3.7199 12.3304 0.4381 22 1 -3.4350 14.3422 1.7624 23 1 -2.0157 13.9474 -0.1634 24 6 3.7632 7.4455 2.6597 25 6 4.5680 6.5161 1.7450 26 6 2.2971 3.4740 -0.6201 27 7 1.6763 2.3694 -0.9300 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 3.3237 1.3987 1.7266 34 1 2.6826 6.5315 -0.4014 35 1 1.7806 5.1521 0.2798 36 1 1.3584 6.3912 2.3542 37 1 0.8470 7.3985 0.9780 38 1 1.4080 8.5584 3.5266 39 1 2.6590 9.7452 3.0852 40 1 0.2751 10.9893 3.2614 41 1 -1.9231 13.4647 3.6870 42 1 3.3910 6.8813 3.5148 43 1 4.4031 8.2559 3.0088 44 1 5.3407 6.0110 2.3247 45 1 5.0274 7.0972 0.9454 46 1 2.2315 4.4102 -1.1546 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112721802.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:02 Heat of formation + Delta-G solvation = 8.539893 kcal Electronic energy + Delta-G solvation = -28737.192653 eV Core-core repulsion = 24663.401988 eV Total energy + Delta-G solvation = -4073.790665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.51714 -40.96403 -40.08562 -38.50613 -36.06549 -35.68020 -35.15923 -33.23959 -32.38655 -31.59921 -30.71547 -29.85310 -27.38245 -25.69913 -25.38037 -24.37337 -23.64326 -21.76907 -21.69621 -21.02889 -20.15295 -19.82996 -18.41964 -17.79117 -17.45451 -16.89400 -16.71370 -16.57167 -16.36628 -16.17115 -16.03216 -15.56377 -15.33151 -15.28350 -15.12912 -14.93732 -14.61229 -14.10910 -13.98526 -13.74389 -13.48830 -13.35324 -13.17568 -13.00730 -12.89312 -12.76121 -12.51002 -12.40626 -12.28647 -12.16691 -12.14273 -12.07555 -11.88052 -11.41130 -10.90473 -10.56767 -10.31129 -9.97681 -9.85426 -9.58732 -9.19352 -8.43546 -5.91670 0.55250 1.10918 1.39982 1.41546 1.43439 1.53966 1.96664 2.08986 2.26968 2.32332 2.76618 3.23590 3.36407 3.41149 3.72881 3.82051 3.94472 4.01478 4.04295 4.07639 4.17778 4.25426 4.30538 4.34909 4.40474 4.47784 4.50013 4.52008 4.58838 4.68146 4.77525 4.79136 4.86790 4.88197 4.95187 5.06773 5.20909 5.35476 5.43878 5.50786 5.84301 5.89023 6.06150 6.15600 6.40540 6.51110 6.63818 7.15881 7.16268 7.60299 8.15503 8.73671 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014812 B = 0.002421 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.910231 B =11562.133310 C =12941.591559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.116 3.884 3 N -0.356 5.356 4 C 0.133 3.867 5 C -0.318 4.318 6 C 0.598 3.402 7 O -0.586 6.586 8 N -0.607 5.607 9 C 0.116 3.884 10 C 0.043 3.957 11 N -0.529 5.529 12 C 0.058 3.942 13 C 0.443 3.557 14 O -0.609 6.609 15 N -0.576 5.576 16 C -0.329 4.329 17 H 0.081 0.919 18 C -0.015 4.015 19 N -0.922 5.922 20 Si 0.991 3.009 21 H -0.272 1.272 22 H -0.273 1.273 23 H -0.272 1.272 24 C 0.046 3.954 25 C 0.121 3.879 26 C 0.074 3.926 27 N -0.318 5.318 28 H 0.102 0.898 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.132 0.868 33 H 0.211 0.789 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.028 0.972 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.114 0.886 40 H 0.395 0.605 41 H 0.276 0.724 42 H 0.037 0.963 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.080 0.920 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.723 -23.673 -0.990 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.002 4.002 3 N -0.135 5.135 4 C -0.020 4.020 5 C -0.333 4.333 6 C 0.389 3.611 7 O -0.468 6.468 8 N -0.339 5.339 9 C -0.007 4.007 10 C -0.085 4.085 11 N -0.254 5.254 12 C -0.073 4.073 13 C 0.231 3.769 14 O -0.495 6.495 15 N -0.213 5.213 16 C -0.458 4.458 17 H 0.099 0.901 18 C -0.214 4.214 19 N -0.563 5.563 20 Si 0.815 3.185 21 H -0.197 1.197 22 H -0.197 1.197 23 H -0.197 1.197 24 C -0.082 4.082 25 C -0.002 4.002 26 C -0.112 4.112 27 N -0.138 5.138 28 H 0.121 0.879 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.119 0.881 32 H 0.150 0.850 33 H 0.228 0.772 34 H 0.099 0.901 35 H 0.126 0.874 36 H 0.047 0.953 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.132 0.868 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.125 0.875 44 H 0.116 0.884 45 H 0.098 0.902 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.349 -24.446 -2.573 25.656 hybrid contribution -0.491 1.109 1.321 1.794 sum 6.858 -23.336 -1.251 24.355 Atomic orbital electron populations 1.22033 0.93420 1.04260 1.02313 1.22256 0.96433 0.75117 1.06434 1.49008 1.33310 1.11478 1.19693 1.23320 0.91121 0.92676 0.94861 1.20216 1.12677 0.95806 1.04563 1.17507 0.83200 0.81535 0.78857 1.90711 1.31539 1.79422 1.45151 1.48032 1.23147 1.05357 1.57347 1.22304 0.85264 0.97615 0.95527 1.22597 0.96093 0.91779 0.98054 1.61510 1.10108 1.12623 1.41149 1.21730 0.96488 0.95363 0.93731 1.20688 0.84389 0.82880 0.88964 1.90455 1.71578 1.68242 1.19225 1.41944 1.34774 1.31743 1.12867 1.19618 1.15811 1.15221 0.95195 0.90101 1.26020 1.00051 0.97733 0.97610 1.69674 1.41810 1.31218 1.13645 0.85013 0.77858 0.77817 0.77815 1.19678 1.19747 1.19719 1.22557 0.92848 0.98358 0.94455 1.21731 0.92000 0.88836 0.97583 1.24509 0.93557 0.97839 0.95336 1.77141 1.24632 0.97662 1.14344 0.87945 0.92935 0.92955 0.88144 0.84993 0.77210 0.90110 0.87370 0.95339 0.89966 0.91917 0.86846 0.77123 0.91422 0.94506 0.87459 0.88432 0.90152 0.77951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 10.09 71.98 0.73 -0.74 16 2 C 0.12 0.94 7.21 86.38 0.62 1.56 16 3 N -0.36 -5.95 3.65 -346.30 -1.26 -7.22 16 4 C 0.13 2.36 11.35 84.28 0.96 3.31 16 5 C -0.32 -7.29 5.59 -20.15 -0.11 -7.40 16 6 C 0.60 16.20 7.64 86.66 0.66 16.86 16 7 O -0.59 -18.82 16.46 -4.03 -0.07 -18.88 16 8 N -0.61 -15.59 3.00 -820.93 -2.47 -18.06 16 9 C 0.12 2.96 5.31 86.50 0.46 3.42 16 10 C 0.04 1.35 5.27 86.54 0.46 1.81 16 11 N -0.53 -16.52 4.37 -898.87 -3.93 -20.44 16 12 C 0.06 1.95 5.45 85.56 0.47 2.41 16 13 C 0.44 20.42 7.44 87.66 0.65 21.08 16 14 O -0.61 -32.03 13.91 -3.06 -0.04 -32.07 16 15 N -0.58 -29.00 5.29 -306.98 -1.62 -30.63 16 16 C -0.33 -18.36 9.68 84.04 0.81 -17.55 16 17 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 18 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 19 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 20 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 22 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 23 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 24 C 0.05 1.11 5.62 86.38 0.49 1.60 16 25 C 0.12 2.90 6.61 86.35 0.57 3.47 16 26 C 0.07 1.63 9.60 85.65 0.82 2.45 16 27 N -0.32 -7.06 12.33 -56.28 -0.69 -7.75 16 28 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.13 0.21 8.06 -2.39 -0.02 0.20 16 33 H 0.21 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 35 H 0.11 2.48 4.24 -2.38 -0.01 2.47 16 36 H 0.03 0.86 8.14 -2.38 -0.02 0.85 16 37 H 0.08 3.14 5.77 -2.39 -0.01 3.13 16 38 H 0.06 1.94 8.12 -2.39 -0.02 1.92 16 39 H 0.11 3.31 7.97 -2.39 -0.02 3.29 16 40 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 41 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.11 2.16 7.99 -2.38 -0.02 2.14 16 44 H 0.10 2.31 7.04 -2.39 -0.02 2.29 16 45 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.20 3.87 6.30 -2.91 -0.02 3.85 16 Total: -1.00 -74.44 377.33 0.56 -73.88 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.28 Total: 33.82 kcal Atomic # 6 Polarization: 23.93 SS G_CDS: 8.05 Total: 31.98 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -9.69 Total: -133.40 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -0.11 Total: -50.95 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -74.44 0.56 -73.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112721802.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.424 kcal (2) G-P(sol) polarization free energy of solvation -74.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds