Wall clock time and date at job start Tue Mar 31 2020 18:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46826 * 2 1 4 4 N 1.28440 * 125.18412 * 264.49982 * 3 2 1 5 5 C 1.30865 * 110.92674 * 179.97438 * 4 3 2 6 6 C 1.39682 * 107.86003 * 359.77640 * 5 4 3 7 7 C 1.36591 * 125.19359 * 84.47922 * 3 2 1 8 8 C 1.47163 * 126.88279 * 359.97438 * 7 3 2 9 9 O 1.21630 * 120.00247 * 25.36317 * 8 7 3 10 10 N 1.34775 * 120.00293 * 205.34892 * 8 7 3 11 11 C 1.47087 * 120.87952 * 359.40040 * 10 8 7 12 12 C 1.53236 * 108.52262 * 129.08349 * 11 10 8 13 13 N 1.46906 * 109.33960 * 53.82804 * 12 11 10 14 14 C 1.46899 * 110.99882 * 172.74828 * 13 12 11 15 15 C 1.50708 * 109.47078 * 294.30126 * 14 13 12 16 16 O 1.21290 * 119.99811 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99855 * 179.97438 * 15 14 13 18 18 C 1.37103 * 119.99767 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99996 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99869 * 180.02562 * 18 17 15 21 21 N 1.31416 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47119 * 60.00188 * 22 20 18 24 24 H 1.48497 * 109.47286 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47189 * 300.00021 * 22 20 18 26 26 C 1.46899 * 111.26909 * 296.89711 * 13 12 11 27 27 C 1.47078 * 120.88684 * 179.67303 * 10 8 7 28 28 H 1.08993 * 109.47625 * 295.33974 * 1 2 3 29 29 H 1.09007 * 109.47022 * 55.34242 * 1 2 3 30 30 H 1.08996 * 109.47233 * 175.33609 * 1 2 3 31 31 H 1.08999 * 109.47615 * 239.99945 * 2 1 3 32 32 H 1.08999 * 109.46875 * 119.99434 * 2 1 3 33 33 H 1.08000 * 126.07401 * 180.02562 * 5 4 3 34 34 H 1.07999 * 127.32244 * 180.27513 * 6 5 4 35 35 H 1.08998 * 109.63013 * 248.79285 * 11 10 8 36 36 H 1.09002 * 109.62515 * 9.37269 * 11 10 8 37 37 H 1.09006 * 109.49376 * 293.87573 * 12 11 10 38 38 H 1.08997 * 109.49606 * 173.78722 * 12 11 10 39 39 H 1.08998 * 109.47099 * 54.30048 * 14 13 12 40 40 H 1.09004 * 109.47093 * 174.30408 * 14 13 12 41 41 H 0.97000 * 120.00063 * 0.02562 * 17 15 14 42 42 H 0.96999 * 120.00114 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.49271 * 303.14148 * 26 13 12 44 44 H 1.09003 * 109.49283 * 183.06357 * 26 13 12 45 45 H 1.09001 * 109.62284 * 350.63195 * 27 10 8 46 46 H 1.09000 * 109.62622 * 111.20104 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3598 2.0455 -1.0449 5 6 2.7529 3.2518 -0.7242 6 6 2.6509 3.3810 0.6629 7 6 2.1794 2.1593 1.1111 8 6 1.9010 1.7774 2.5047 9 8 1.9337 0.6066 2.8326 10 7 1.6099 2.7249 3.4179 11 6 1.5780 4.1476 3.0457 12 6 0.2539 4.7479 3.5297 13 7 0.0928 4.4775 4.9647 14 6 -1.0776 5.1818 5.5050 15 6 -0.8444 6.6692 5.4369 16 8 0.1944 7.1000 4.9825 17 7 -1.7906 7.5206 5.8800 18 6 -1.5786 8.8737 5.8175 19 1 -0.6537 9.2573 5.4129 20 6 -2.5539 9.7514 6.2748 21 7 -3.6792 9.2846 6.7676 22 14 -2.2655 11.5950 6.1891 23 1 -2.0547 11.9978 4.7754 24 1 -3.4482 12.3071 6.7361 25 1 -1.0639 11.9458 6.9882 26 6 0.0074 3.0349 5.2288 27 6 1.3214 2.3645 4.8143 28 1 -0.3634 0.4398 0.9287 29 1 -0.3633 0.5844 -0.8454 30 1 -0.3633 -1.0242 -0.0836 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.0918 4.0138 -1.4104 34 1 2.8905 4.2491 1.2591 35 1 2.4107 4.6685 3.5184 36 1 1.6496 4.2443 1.9623 37 1 -0.5724 4.2973 2.9798 38 1 0.2594 5.8247 3.3610 39 1 -1.9592 4.9250 4.9178 40 1 -1.2329 4.8856 6.5425 41 1 -2.6214 7.1760 6.2431 42 1 -4.3598 9.8974 7.0872 43 1 -0.8154 2.6083 4.6552 44 1 -0.1658 2.8695 6.2922 45 1 1.2234 1.2823 4.9003 46 1 2.1295 2.7139 5.4570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112788178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:08 Heat of formation + Delta-G solvation = 44.264234 kcal Electronic energy + Delta-G solvation = -29308.843638 eV Core-core repulsion = 25236.602096 eV Total energy + Delta-G solvation = -4072.241542 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.81158 -40.10744 -38.64966 -37.32414 -35.12977 -34.38746 -33.82466 -32.02331 -31.29942 -30.39457 -30.03575 -28.85772 -26.02272 -24.50665 -23.99012 -23.93739 -22.79541 -21.81765 -20.55482 -19.42599 -19.18457 -17.92433 -17.39911 -16.94668 -16.25716 -16.05956 -15.79137 -15.38105 -15.12859 -14.91017 -14.79561 -14.57372 -14.38012 -14.21393 -13.84989 -13.73246 -13.52541 -13.25827 -12.95989 -12.87771 -12.48387 -12.28343 -12.01725 -11.66881 -11.63323 -11.56057 -11.36010 -11.22734 -11.15750 -10.86958 -10.69830 -10.46918 -10.24942 -10.18576 -9.50550 -9.41862 -9.16012 -8.95421 -8.43800 -8.03070 -7.93860 -6.45296 -3.86384 1.09109 2.07137 2.41831 2.85334 2.93245 3.17373 3.23810 3.27636 3.84001 3.89952 4.14111 4.20091 4.26231 4.62046 4.74692 4.80179 4.90461 4.96637 4.96962 5.00272 5.18743 5.20553 5.23924 5.28205 5.32036 5.38847 5.45750 5.50811 5.55065 5.63572 5.70782 5.75920 5.79854 5.84425 6.07460 6.11914 6.21168 6.26381 6.38643 6.51399 7.03247 7.22354 7.26029 7.51532 7.78715 7.91212 8.01977 8.57125 9.13931 9.50024 10.01066 10.72258 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019037 B = 0.002460 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.453794 B =11377.367019 C =12040.110997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.110 3.890 3 N -0.257 5.257 4 N -0.280 5.280 5 C -0.002 4.002 6 C -0.200 4.200 7 C -0.032 4.032 8 C 0.591 3.409 9 O -0.548 6.548 10 N -0.591 5.591 11 C 0.082 3.918 12 C 0.040 3.960 13 N -0.514 5.514 14 C 0.046 3.954 15 C 0.443 3.557 16 O -0.578 6.578 17 N -0.562 5.562 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.273 1.273 24 H -0.285 1.285 25 H -0.273 1.273 26 C 0.040 3.960 27 C 0.121 3.879 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.188 0.812 34 H 0.176 0.824 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.026 0.974 38 H 0.118 0.882 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.035 0.965 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.168 -16.684 -9.940 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.010 4.010 3 N -0.045 5.045 4 N -0.112 5.112 5 C -0.178 4.178 6 C -0.229 4.229 7 C -0.160 4.160 8 C 0.378 3.622 9 O -0.427 6.427 10 N -0.324 5.324 11 C -0.040 4.040 12 C -0.089 4.089 13 N -0.239 5.239 14 C -0.085 4.085 15 C 0.228 3.772 16 O -0.463 6.463 17 N -0.199 5.199 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.088 4.088 27 C -0.001 4.001 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.133 0.867 33 H 0.205 0.795 34 H 0.193 0.807 35 H 0.105 0.895 36 H 0.132 0.868 37 H 0.044 0.956 38 H 0.136 0.864 39 H 0.065 0.935 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.053 0.947 44 H 0.107 0.893 45 H 0.113 0.887 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.899 -17.598 -10.648 22.033 hybrid contribution -1.166 1.104 0.586 1.709 sum 6.733 -16.494 -10.062 20.460 Atomic orbital electron populations 1.22116 0.93534 1.03585 1.03153 1.22180 0.95984 0.76800 1.05999 1.45826 1.44400 1.12238 1.02010 1.73198 1.16929 1.07326 1.13756 1.23644 1.04568 0.94388 0.95166 1.22682 1.07127 0.97272 0.95781 1.21355 1.11328 0.93452 0.89880 1.16935 0.77033 0.85099 0.83144 1.90756 1.53616 1.17692 1.80661 1.47931 1.67444 1.07430 1.09555 1.22875 0.99489 0.78887 1.02768 1.22659 0.95106 1.04005 0.87081 1.61536 1.40238 1.06839 1.15306 1.21859 0.91216 0.94680 1.00761 1.19690 0.85656 0.86920 0.84896 1.90471 1.27294 1.78256 1.50275 1.41869 1.16934 1.06322 1.54753 1.19646 1.03673 0.80663 1.38952 0.87895 1.25268 0.95079 1.00751 0.96793 1.69603 1.06894 1.36221 1.41562 0.85920 0.77687 0.81859 0.78774 1.19884 1.20995 1.19856 1.22508 0.96223 0.88480 1.01638 1.21779 0.97377 1.00702 0.80276 0.91881 0.91685 0.89929 0.88098 0.86681 0.79504 0.80671 0.89540 0.86814 0.95561 0.86427 0.93466 0.89165 0.77490 0.91781 0.94717 0.89265 0.88660 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.11 1.02 6.66 -4.04 -0.03 1.00 16 3 N -0.26 -3.02 3.35 -57.14 -0.19 -3.21 16 4 N -0.28 -3.34 11.90 30.59 0.36 -2.98 16 5 C 0.00 -0.02 12.03 -17.42 -0.21 -0.23 16 6 C -0.20 -2.13 8.73 -38.98 -0.34 -2.47 16 7 C -0.03 -0.39 6.61 -82.06 -0.54 -0.93 16 8 C 0.59 7.82 7.59 -12.64 -0.10 7.72 16 9 O -0.55 -8.13 14.53 5.25 0.08 -8.06 16 10 N -0.59 -7.38 3.01 -173.83 -0.52 -7.90 16 11 C 0.08 1.00 5.57 -3.60 -0.02 0.98 16 12 C 0.04 0.59 5.26 -3.70 -0.02 0.57 16 13 N -0.51 -7.91 4.37 -235.76 -1.03 -8.94 16 14 C 0.05 0.77 5.45 -4.97 -0.03 0.74 16 15 C 0.44 9.86 7.44 -10.98 -0.08 9.78 16 16 O -0.58 -14.52 13.91 5.55 0.08 -14.44 16 17 N -0.56 -13.70 5.29 -10.96 -0.06 -13.76 16 18 C -0.30 -8.08 9.68 -14.93 -0.14 -8.23 16 19 H 0.10 2.89 7.16 -52.49 -0.38 2.52 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -24.03 13.05 55.50 0.72 -23.31 16 22 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 C 0.04 0.49 5.62 -3.70 -0.02 0.47 16 27 C 0.12 1.41 6.60 -3.61 -0.02 1.39 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.12 1.14 6.43 -51.93 -0.33 0.81 16 33 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.18 1.54 5.80 -52.49 -0.30 1.24 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.11 1.23 3.44 -51.93 -0.18 1.05 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.12 2.10 5.76 -51.93 -0.30 1.80 16 39 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 40 H 0.09 1.36 7.97 -51.93 -0.41 0.95 16 41 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 43 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.95 7.99 -51.93 -0.41 0.53 16 45 H 0.10 1.08 7.06 -51.93 -0.37 0.71 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -32.38 372.38 -7.61 -39.99 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.37 Total: 11.14 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -1.27 Total: 10.31 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -0.71 Total: -60.10 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.15 Total: -22.50 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.38 -7.61 -39.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112788178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.254 kcal (2) G-P(sol) polarization free energy of solvation -32.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds