Wall clock time and date at job start Tue Mar 31 2020 18:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46507 * 109.46826 * 2 1 4 4 N 1.28440 * 125.18412 * 264.49982 * 3 2 1 5 5 C 1.30865 * 110.92674 * 179.97438 * 4 3 2 6 6 C 1.39682 * 107.86003 * 359.77640 * 5 4 3 7 7 C 1.36591 * 125.19359 * 84.47922 * 3 2 1 8 8 C 1.47163 * 126.88279 * 359.97438 * 7 3 2 9 9 O 1.21630 * 120.00247 * 25.36317 * 8 7 3 10 10 N 1.34775 * 120.00293 * 205.34892 * 8 7 3 11 11 C 1.47087 * 120.87952 * 359.40040 * 10 8 7 12 12 C 1.53236 * 108.52262 * 129.08349 * 11 10 8 13 13 N 1.46906 * 109.33960 * 53.82804 * 12 11 10 14 14 C 1.46899 * 110.99882 * 172.74828 * 13 12 11 15 15 C 1.50708 * 109.47078 * 294.30126 * 14 13 12 16 16 O 1.21290 * 119.99811 * 0.02562 * 15 14 13 17 17 N 1.34771 * 119.99855 * 179.97438 * 15 14 13 18 18 C 1.37103 * 119.99767 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99996 * 0.02562 * 18 17 15 20 20 C 1.38949 * 119.99869 * 180.02562 * 18 17 15 21 21 N 1.31416 * 120.00103 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99923 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47119 * 60.00188 * 22 20 18 24 24 H 1.48497 * 109.47286 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47189 * 300.00021 * 22 20 18 26 26 C 1.46899 * 111.26909 * 296.89711 * 13 12 11 27 27 C 1.47078 * 120.88684 * 179.67303 * 10 8 7 28 28 H 1.08993 * 109.47625 * 295.33974 * 1 2 3 29 29 H 1.09007 * 109.47022 * 55.34242 * 1 2 3 30 30 H 1.08996 * 109.47233 * 175.33609 * 1 2 3 31 31 H 1.08999 * 109.47615 * 239.99945 * 2 1 3 32 32 H 1.08999 * 109.46875 * 119.99434 * 2 1 3 33 33 H 1.08000 * 126.07401 * 180.02562 * 5 4 3 34 34 H 1.07999 * 127.32244 * 180.27513 * 6 5 4 35 35 H 1.08998 * 109.63013 * 248.79285 * 11 10 8 36 36 H 1.09002 * 109.62515 * 9.37269 * 11 10 8 37 37 H 1.09006 * 109.49376 * 293.87573 * 12 11 10 38 38 H 1.08997 * 109.49606 * 173.78722 * 12 11 10 39 39 H 1.08998 * 109.47099 * 54.30048 * 14 13 12 40 40 H 1.09004 * 109.47093 * 174.30408 * 14 13 12 41 41 H 0.97000 * 120.00063 * 0.02562 * 17 15 14 42 42 H 0.96999 * 120.00114 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.49271 * 303.14148 * 26 13 12 44 44 H 1.09003 * 109.49283 * 183.06357 * 26 13 12 45 45 H 1.09001 * 109.62284 * 350.63195 * 27 10 8 46 46 H 1.09000 * 109.62622 * 111.20104 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.3598 2.0455 -1.0449 5 6 2.7529 3.2518 -0.7242 6 6 2.6509 3.3810 0.6629 7 6 2.1794 2.1593 1.1111 8 6 1.9010 1.7774 2.5047 9 8 1.9337 0.6066 2.8326 10 7 1.6099 2.7249 3.4179 11 6 1.5780 4.1476 3.0457 12 6 0.2539 4.7479 3.5297 13 7 0.0928 4.4775 4.9647 14 6 -1.0776 5.1818 5.5050 15 6 -0.8444 6.6692 5.4369 16 8 0.1944 7.1000 4.9825 17 7 -1.7906 7.5206 5.8800 18 6 -1.5786 8.8737 5.8175 19 1 -0.6537 9.2573 5.4129 20 6 -2.5539 9.7514 6.2748 21 7 -3.6792 9.2846 6.7676 22 14 -2.2655 11.5950 6.1891 23 1 -2.0547 11.9978 4.7754 24 1 -3.4482 12.3071 6.7361 25 1 -1.0639 11.9458 6.9882 26 6 0.0074 3.0349 5.2288 27 6 1.3214 2.3645 4.8143 28 1 -0.3634 0.4398 0.9287 29 1 -0.3633 0.5844 -0.8454 30 1 -0.3633 -1.0242 -0.0836 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.0918 4.0138 -1.4104 34 1 2.8905 4.2491 1.2591 35 1 2.4107 4.6685 3.5184 36 1 1.6496 4.2443 1.9623 37 1 -0.5724 4.2973 2.9798 38 1 0.2594 5.8247 3.3610 39 1 -1.9592 4.9250 4.9178 40 1 -1.2329 4.8856 6.5425 41 1 -2.6214 7.1760 6.2431 42 1 -4.3598 9.8974 7.0872 43 1 -0.8154 2.6083 4.6552 44 1 -0.1658 2.8695 6.2922 45 1 1.2234 1.2823 4.9003 46 1 2.1295 2.7139 5.4570 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112788178.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:06 Heat of formation + Delta-G solvation = 20.952344 kcal Electronic energy + Delta-G solvation = -29309.854517 eV Core-core repulsion = 25236.602096 eV Total energy + Delta-G solvation = -4073.252421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.65601 -41.18793 -40.18221 -38.65587 -36.22523 -35.75552 -35.19889 -33.24221 -32.99718 -31.39629 -30.80383 -30.11863 -27.51372 -25.87648 -24.99415 -24.95562 -23.82681 -22.71697 -21.53889 -21.03235 -20.23998 -19.83621 -18.38622 -17.95123 -17.71818 -17.08446 -16.77405 -16.56940 -16.38743 -16.29540 -16.08300 -15.66065 -15.44430 -15.38689 -15.25481 -15.14707 -14.72572 -14.15446 -14.09803 -13.79474 -13.59366 -13.48243 -13.20892 -13.07519 -12.95790 -12.78408 -12.40663 -12.40233 -12.34636 -12.24052 -12.17854 -12.09760 -11.60705 -11.41271 -11.19651 -10.36683 -10.25868 -10.00418 -9.97790 -9.82387 -9.23703 -8.43484 -5.91601 0.17821 1.23153 1.41955 1.44124 1.54411 1.59932 1.94594 1.96891 2.09095 2.30436 2.72870 3.19963 3.24061 3.38932 3.52113 3.83518 3.93576 3.95240 4.03219 4.11108 4.15595 4.22045 4.25804 4.27676 4.38943 4.45971 4.49830 4.57101 4.61181 4.63661 4.70223 4.75945 4.78633 4.84025 4.93236 5.02478 5.03516 5.30978 5.44285 5.49064 5.71532 5.80375 6.04554 6.11058 6.19510 6.63701 6.82466 7.03663 7.16319 7.60469 8.15361 8.73738 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.019037 B = 0.002460 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.453794 B =11377.367019 C =12040.110997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.105 3.895 3 N -0.263 5.263 4 N -0.296 5.296 5 C -0.002 4.002 6 C -0.198 4.198 7 C -0.054 4.054 8 C 0.591 3.409 9 O -0.568 6.568 10 N -0.591 5.591 11 C 0.092 3.908 12 C 0.044 3.956 13 N -0.529 5.529 14 C 0.057 3.943 15 C 0.444 3.556 16 O -0.609 6.609 17 N -0.576 5.576 18 C -0.329 4.329 19 H 0.082 0.918 20 C -0.014 4.014 21 N -0.923 5.923 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.274 1.274 25 H -0.272 1.272 26 C 0.045 3.955 27 C 0.121 3.879 28 H 0.043 0.957 29 H 0.060 0.940 30 H 0.106 0.894 31 H 0.119 0.881 32 H 0.107 0.893 33 H 0.218 0.782 34 H 0.191 0.809 35 H 0.085 0.915 36 H 0.129 0.871 37 H 0.028 0.972 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.114 0.886 41 H 0.395 0.605 42 H 0.276 0.724 43 H 0.038 0.962 44 H 0.110 0.890 45 H 0.101 0.899 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.294 -17.219 -10.317 21.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.014 4.014 3 N -0.051 5.051 4 N -0.129 5.129 5 C -0.178 4.178 6 C -0.226 4.226 7 C -0.182 4.182 8 C 0.379 3.621 9 O -0.448 6.448 10 N -0.322 5.322 11 C -0.030 4.030 12 C -0.085 4.085 13 N -0.254 5.254 14 C -0.074 4.074 15 C 0.231 3.769 16 O -0.495 6.495 17 N -0.213 5.213 18 C -0.458 4.458 19 H 0.100 0.900 20 C -0.214 4.214 21 N -0.564 5.564 22 Si 0.814 3.186 23 H -0.196 1.196 24 H -0.199 1.199 25 H -0.197 1.197 26 C -0.083 4.083 27 C -0.001 4.001 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.125 0.875 31 H 0.137 0.863 32 H 0.125 0.875 33 H 0.234 0.766 34 H 0.208 0.792 35 H 0.103 0.897 36 H 0.146 0.854 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.132 0.868 41 H 0.228 0.772 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.128 0.872 45 H 0.120 0.880 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.020 -18.159 -11.021 22.705 hybrid contribution -1.149 1.205 0.664 1.793 sum 6.870 -16.954 -10.357 21.021 Atomic orbital electron populations 1.22063 0.92852 1.04841 1.01793 1.22339 0.96514 0.76086 1.06467 1.46070 1.44419 1.12843 1.01781 1.73192 1.17477 1.08126 1.14073 1.24200 1.03590 0.94442 0.95538 1.22931 1.06320 0.97133 0.96240 1.21432 1.12659 0.94437 0.89716 1.17059 0.76615 0.84831 0.83558 1.90739 1.54611 1.18423 1.81075 1.47957 1.67189 1.07259 1.09842 1.22795 0.97926 0.78679 1.03578 1.22525 0.96582 1.02156 0.87227 1.61522 1.39661 1.08775 1.15420 1.21734 0.92388 0.90584 1.02648 1.20668 0.84455 0.89101 0.82671 1.90453 1.28472 1.79562 1.50965 1.41944 1.17648 1.05903 1.55806 1.19626 1.03493 0.82358 1.40352 0.90008 1.26012 0.94665 1.04602 0.96091 1.69669 1.07343 1.37548 1.41850 0.85019 0.77818 0.76958 0.78761 1.19611 1.19856 1.19705 1.22567 0.96537 0.86150 1.03030 1.21835 0.97289 1.01019 0.79918 0.93826 0.92121 0.87522 0.86260 0.87523 0.76589 0.79191 0.89686 0.85355 0.95400 0.89603 0.91900 0.86837 0.77151 0.91433 0.94406 0.87187 0.88044 0.89693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 10.24 71.98 0.74 -1.74 16 2 C 0.10 1.86 6.66 86.38 0.58 2.44 16 3 N -0.26 -5.95 3.35 -334.68 -1.12 -7.07 16 4 N -0.30 -6.69 11.90 -57.13 -0.68 -7.37 16 5 C 0.00 -0.04 12.03 85.19 1.02 0.98 16 6 C -0.20 -3.92 8.73 22.66 0.20 -3.72 16 7 C -0.05 -1.28 6.61 40.79 0.27 -1.01 16 8 C 0.59 15.16 7.59 86.59 0.66 15.82 16 9 O -0.57 -16.51 14.53 -4.13 -0.06 -16.57 16 10 N -0.59 -14.05 3.01 -822.12 -2.47 -16.52 16 11 C 0.09 2.17 5.57 86.35 0.48 2.66 16 12 C 0.04 1.28 5.26 86.38 0.45 1.73 16 13 N -0.53 -15.56 4.37 -899.80 -3.93 -19.49 16 14 C 0.06 1.85 5.45 85.56 0.47 2.32 16 15 C 0.44 19.85 7.44 87.66 0.65 20.50 16 16 O -0.61 -31.10 13.91 -3.06 -0.04 -31.14 16 17 N -0.58 -28.38 5.29 -306.99 -1.62 -30.00 16 18 C -0.33 -18.04 9.68 84.04 0.81 -17.23 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 21 N -0.92 -49.06 13.05 21.66 0.28 -48.77 16 22 Si 0.99 42.02 29.55 68.60 2.03 44.05 16 23 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 24 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 C 0.05 1.00 5.62 86.38 0.49 1.49 16 27 C 0.12 2.63 6.60 86.35 0.57 3.20 16 28 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.11 1.11 8.14 -2.39 -0.02 1.10 16 31 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.11 2.08 6.43 -2.39 -0.02 2.06 16 33 H 0.22 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.19 3.03 5.80 -2.91 -0.02 3.01 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.13 2.64 3.44 -2.39 -0.01 2.63 16 37 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.09 3.11 5.76 -2.39 -0.01 3.10 16 39 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 40 H 0.11 3.16 7.97 -2.38 -0.02 3.14 16 41 H 0.39 18.64 7.90 -92.71 -0.73 17.91 16 42 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 43 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.11 2.00 7.99 -2.39 -0.02 1.98 16 45 H 0.10 2.12 7.06 -2.39 -0.02 2.11 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -69.92 372.38 0.52 -69.41 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.29 Total: 36.33 kcal Atomic # 6 Polarization: 19.31 SS G_CDS: 7.85 Total: 27.16 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -9.55 Total: -129.23 kcal Atomic # 8 Polarization: -47.61 SS G_CDS: -0.10 Total: -47.71 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -69.92 0.52 -69.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112788178.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.358 kcal (2) G-P(sol) polarization free energy of solvation -69.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds