Wall clock time and date at job start Tue Mar 31 2020 18:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47477 * 2 1 4 4 C 1.53008 * 109.47147 * 240.00662 * 2 1 3 5 5 N 1.46493 * 109.47344 * 175.00175 * 4 2 1 6 6 C 1.34431 * 126.82423 * 124.70340 * 5 4 2 7 7 N 1.30838 * 108.07759 * 179.89304 * 6 5 4 8 8 C 1.33242 * 109.82868 * 0.38676 * 7 6 5 9 9 N 1.30717 * 108.94773 * 359.76081 * 8 7 6 10 10 N 1.46498 * 109.47363 * 120.00600 * 2 1 3 11 11 C 1.34778 * 119.99751 * 274.99795 * 10 2 1 12 12 O 1.21352 * 119.99992 * 0.02562 * 11 10 2 13 13 C 1.49449 * 119.99719 * 179.97438 * 11 10 2 14 14 O 1.21346 * 120.00367 * 6.40639 * 13 11 10 15 15 N 1.34783 * 119.99714 * 186.39674 * 13 11 10 16 16 C 1.46925 * 120.63081 * 7.09466 * 15 13 11 17 17 C 1.53191 * 108.77405 * 233.57733 * 16 15 13 18 18 C 1.53035 * 109.31456 * 305.36797 * 17 16 15 19 19 C 1.53037 * 109.54016 * 61.36664 * 18 17 16 20 20 H 1.08999 * 109.50308 * 58.58020 * 19 18 17 21 21 C 1.50700 * 109.50009 * 178.68465 * 19 18 17 22 22 H 1.08005 * 119.99971 * 359.97438 * 21 19 18 23 23 C 1.37879 * 120.00114 * 179.97438 * 21 19 18 24 24 N 1.31512 * 120.00037 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99745 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47110 * 60.00021 * 25 23 21 27 27 H 1.48503 * 109.46501 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47079 * 299.99425 * 25 23 21 29 29 C 1.46930 * 120.62923 * 186.80929 * 15 13 11 30 30 H 1.08996 * 109.47077 * 300.00106 * 1 2 3 31 31 H 1.09003 * 109.46813 * 59.99401 * 1 2 3 32 32 H 1.08993 * 109.47363 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46352 * 294.99825 * 4 2 1 34 34 H 1.08993 * 109.47264 * 54.99697 * 4 2 1 35 35 H 1.07993 * 125.96194 * 0.04488 * 6 5 4 36 36 H 1.07998 * 125.52758 * 179.80089 * 8 7 6 37 37 H 0.96999 * 119.99967 * 94.72069 * 10 2 1 38 38 H 1.09002 * 109.58550 * 353.37140 * 16 15 13 39 39 H 1.09005 * 109.58564 * 113.65245 * 16 15 13 40 40 H 1.09004 * 109.49195 * 65.31999 * 17 16 15 41 41 H 1.08998 * 109.49751 * 185.41013 * 17 16 15 42 42 H 1.09006 * 109.45738 * 181.38315 * 18 17 16 43 43 H 1.08996 * 109.45882 * 301.35684 * 18 17 16 44 44 H 0.97002 * 120.00258 * 180.02562 * 24 23 21 45 45 H 1.09001 * 109.58229 * 246.21015 * 29 15 13 46 46 H 1.08998 * 109.58543 * 6.62985 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.6178 -1.3111 6 6 4.3764 -1.6330 -1.4037 7 7 5.5824 -1.1266 -1.4353 8 6 5.5169 0.2019 -1.3568 9 7 4.2625 0.5612 -1.2790 10 7 2.0184 -0.6907 1.1961 11 6 2.1471 -0.0184 2.3571 12 8 1.8581 1.1589 2.4117 13 6 2.6448 -0.7232 3.5774 14 8 3.0426 -1.8668 3.4978 15 7 2.6520 -0.0884 4.7663 16 6 2.0331 1.2362 4.9115 17 6 3.0612 2.1971 5.5170 18 6 3.5972 1.6072 6.8234 19 6 4.2924 0.2745 6.5360 20 1 5.1040 0.4331 5.8259 21 6 4.8481 -0.2899 7.8181 22 1 4.7189 0.2482 8.7456 23 6 5.5214 -1.4930 7.8071 24 7 5.6782 -2.1485 6.6778 25 14 6.2107 -2.1921 9.3963 26 1 5.1043 -2.4090 10.3626 27 1 6.8840 -3.4859 9.1168 28 1 7.1914 -1.2376 9.9726 29 6 3.2734 -0.7106 5.9434 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7516 -1.7714 -1.2057 34 1 1.6054 -0.2616 -2.1370 35 1 4.1282 -2.6831 -1.4472 36 1 6.3630 0.8731 -1.3580 37 1 2.2452 -1.6328 1.1534 38 1 1.7216 1.6031 3.9335 39 1 1.1659 1.1645 5.5680 40 1 3.8844 2.3377 4.8165 41 1 2.5868 3.1574 5.7190 42 1 4.3109 2.3003 7.2689 43 1 2.7702 1.4435 7.5142 44 1 6.1516 -2.9951 6.6700 45 1 2.5067 -0.9375 6.6842 46 1 3.7805 -1.6287 5.6465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118604850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:10 Heat of formation + Delta-G solvation = 37.661088 kcal Electronic energy + Delta-G solvation = -29822.243286 eV Core-core repulsion = 25749.715411 eV Total energy + Delta-G solvation = -4072.527876 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.20096 -40.62019 -38.58202 -36.97867 -36.58991 -33.67118 -33.15361 -31.75473 -31.33560 -31.13846 -29.73529 -27.13381 -26.04444 -25.01065 -23.50673 -22.31411 -22.18179 -21.80515 -20.92284 -20.34965 -18.84711 -17.74446 -17.28462 -16.88927 -16.24322 -15.94445 -15.61940 -15.46342 -15.22906 -14.74163 -14.56412 -14.25879 -13.97755 -13.80687 -13.70283 -13.41391 -13.20316 -13.02997 -12.77400 -12.61073 -12.53254 -12.12203 -12.06130 -11.77014 -11.48478 -11.37015 -10.96804 -10.72078 -10.48339 -10.28504 -10.15619 -10.07495 -9.99432 -9.90086 -9.87875 -9.39798 -9.22897 -9.12234 -8.55327 -8.42584 -7.84613 -6.01997 -4.10384 1.46889 1.73396 2.04758 2.56846 2.87364 3.31565 3.37172 3.38798 3.59355 3.85583 3.90711 4.18815 4.29179 4.41699 4.62715 4.63914 4.73493 4.87719 4.92574 5.12330 5.25474 5.28492 5.55394 5.63728 5.68302 5.78743 5.86980 6.02314 6.07706 6.24086 6.28230 6.38394 6.57181 6.58560 6.59162 6.72971 6.85009 6.98433 7.00365 7.14426 7.16135 7.57500 7.81368 7.92862 7.94205 7.94991 8.13471 8.34218 8.54318 8.93368 9.55169 11.03698 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.003296 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.990284 B = 8493.058991 C = 9516.649204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.127 3.873 3 H 0.108 0.892 4 C 0.122 3.878 5 N -0.382 5.382 6 C 0.256 3.744 7 N -0.543 5.543 8 C 0.201 3.799 9 N -0.313 5.313 10 N -0.702 5.702 11 C 0.517 3.483 12 O -0.509 6.509 13 C 0.494 3.506 14 O -0.525 6.525 15 N -0.566 5.566 16 C 0.050 3.950 17 C -0.127 4.127 18 C -0.113 4.113 19 C 0.041 3.959 20 H 0.029 0.971 21 C -0.521 4.521 22 H 0.059 0.941 23 C 0.063 3.937 24 N -0.883 5.883 25 Si 0.894 3.106 26 H -0.277 1.277 27 H -0.287 1.287 28 H -0.277 1.277 29 C 0.109 3.891 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.218 0.782 36 H 0.216 0.784 37 H 0.410 0.590 38 H 0.143 0.857 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.264 0.736 45 H 0.048 0.952 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.098 2.504 -18.073 21.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.022 3.978 3 H 0.126 0.874 4 C 0.000 4.000 5 N -0.173 5.173 6 C -0.041 4.041 7 N -0.270 5.270 8 C -0.102 4.102 9 N -0.141 5.141 10 N -0.356 5.356 11 C 0.300 3.700 12 O -0.386 6.386 13 C 0.275 3.725 14 O -0.403 6.403 15 N -0.297 5.297 16 C -0.071 4.071 17 C -0.165 4.165 18 C -0.151 4.151 19 C 0.022 3.978 20 H 0.047 0.953 21 C -0.559 4.559 22 H 0.077 0.923 23 C -0.140 4.140 24 N -0.520 5.520 25 Si 0.722 3.278 26 H -0.202 1.202 27 H -0.212 1.212 28 H -0.202 1.202 29 C -0.011 4.011 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.234 0.766 36 H 0.232 0.768 37 H 0.246 0.754 38 H 0.159 0.841 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.017 3.120 -18.108 21.425 hybrid contribution 0.404 -1.062 1.014 1.523 sum -10.613 2.059 -17.094 20.226 Atomic orbital electron populations 1.22151 0.93333 1.02942 1.03713 1.21360 0.94895 0.98914 0.82640 0.87402 1.22196 0.74881 1.03395 0.99567 1.50485 1.07622 1.04745 1.54470 1.26103 0.84866 0.96636 0.96494 1.70553 1.22776 1.09162 1.24471 1.26022 0.94707 0.91618 0.97854 1.78049 1.04678 1.05755 1.25576 1.45825 1.66310 1.14608 1.08833 1.20794 0.77298 0.86879 0.85013 1.90308 1.49462 1.15858 1.82940 1.19731 0.81663 0.86725 0.84382 1.90753 1.47614 1.16767 1.85137 1.48456 1.53293 1.18784 1.09198 1.23073 0.95183 0.82575 1.06316 1.21850 0.98627 0.97445 0.98624 1.21664 0.99403 0.98964 0.95036 1.19040 0.92812 0.89543 0.96368 0.95274 1.21061 1.35498 1.05692 0.93656 0.92287 1.25058 0.95696 0.96971 0.96275 1.69865 1.41376 1.15586 1.25198 0.86624 0.79263 0.78297 0.83639 1.20224 1.21222 1.20229 1.22586 0.94898 1.00833 0.82764 0.90861 0.90913 0.91780 0.87308 0.87502 0.76563 0.76763 0.75423 0.84099 0.92719 0.92371 0.92261 0.93055 0.93241 0.92559 0.93350 0.85978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.07 9.48 37.16 0.35 -0.72 16 2 C 0.13 1.11 2.71 -67.93 -0.18 0.93 16 3 H 0.11 1.25 7.53 -51.93 -0.39 0.86 16 4 C 0.12 0.73 6.04 -4.04 -0.02 0.70 16 5 N -0.38 -3.71 3.62 -62.63 -0.23 -3.94 16 6 C 0.26 2.49 12.63 -90.65 -1.14 1.34 16 7 N -0.54 -6.97 11.19 -15.83 -0.18 -7.15 16 8 C 0.20 2.48 13.03 -91.81 -1.20 1.29 16 9 N -0.31 -3.97 12.53 29.29 0.37 -3.61 16 10 N -0.70 -8.39 4.99 -54.23 -0.27 -8.66 16 11 C 0.52 8.40 7.74 -11.58 -0.09 8.31 16 12 O -0.51 -8.63 12.76 5.49 0.07 -8.56 16 13 C 0.49 10.01 7.74 -11.58 -0.09 9.92 16 14 O -0.53 -11.93 15.94 5.50 0.09 -11.84 16 15 N -0.57 -11.94 2.97 -173.00 -0.51 -12.45 16 16 C 0.05 0.91 6.27 -3.71 -0.02 0.88 16 17 C -0.13 -2.33 6.08 -26.61 -0.16 -2.49 16 18 C -0.11 -2.37 5.10 -26.69 -0.14 -2.51 16 19 C 0.04 1.05 2.26 -91.43 -0.21 0.84 16 20 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.52 -14.25 8.56 -34.44 -0.29 -14.55 16 22 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 23 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 24 N -0.88 -25.71 11.41 55.43 0.63 -25.08 16 25 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 C 0.11 2.68 5.41 -3.48 -0.02 2.66 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.11 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.22 1.13 8.06 -52.49 -0.42 0.70 16 36 H 0.22 2.01 8.06 -52.49 -0.42 1.58 16 37 H 0.41 4.57 8.09 -40.82 -0.33 4.24 16 38 H 0.14 2.47 3.78 -56.76 -0.21 2.25 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.12 3.43 5.19 -51.93 -0.27 3.16 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -35.26 379.04 -9.31 -44.58 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.66 Total: 6.44 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -3.31 Total: 8.27 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.19 Total: -60.89 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.16 Total: -20.40 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.26 -9.31 -44.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118604850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.240 kcal (2) G-P(sol) polarization free energy of solvation -35.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds