Wall clock time and date at job start Tue Mar 31 2020 18:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47477 * 2 1 4 4 C 1.53008 * 109.47147 * 240.00662 * 2 1 3 5 5 N 1.46493 * 109.47344 * 175.00175 * 4 2 1 6 6 C 1.34431 * 126.82423 * 124.70340 * 5 4 2 7 7 N 1.30838 * 108.07759 * 179.89304 * 6 5 4 8 8 C 1.33242 * 109.82868 * 0.38676 * 7 6 5 9 9 N 1.30717 * 108.94773 * 359.76081 * 8 7 6 10 10 N 1.46498 * 109.47363 * 120.00600 * 2 1 3 11 11 C 1.34778 * 119.99751 * 274.99795 * 10 2 1 12 12 O 1.21352 * 119.99992 * 0.02562 * 11 10 2 13 13 C 1.49449 * 119.99719 * 179.97438 * 11 10 2 14 14 O 1.21346 * 120.00367 * 6.40639 * 13 11 10 15 15 N 1.34783 * 119.99714 * 186.39674 * 13 11 10 16 16 C 1.46925 * 120.63081 * 7.09466 * 15 13 11 17 17 C 1.53191 * 108.77405 * 233.57733 * 16 15 13 18 18 C 1.53035 * 109.31456 * 305.36797 * 17 16 15 19 19 C 1.53037 * 109.54016 * 61.36664 * 18 17 16 20 20 H 1.08999 * 109.50308 * 58.58020 * 19 18 17 21 21 C 1.50700 * 109.50009 * 178.68465 * 19 18 17 22 22 H 1.08005 * 119.99971 * 359.97438 * 21 19 18 23 23 C 1.37879 * 120.00114 * 179.97438 * 21 19 18 24 24 N 1.31512 * 120.00037 * 359.97438 * 23 21 19 25 25 Si 1.86803 * 119.99745 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47110 * 60.00021 * 25 23 21 27 27 H 1.48503 * 109.46501 * 179.97438 * 25 23 21 28 28 H 1.48499 * 109.47079 * 299.99425 * 25 23 21 29 29 C 1.46930 * 120.62923 * 186.80929 * 15 13 11 30 30 H 1.08996 * 109.47077 * 300.00106 * 1 2 3 31 31 H 1.09003 * 109.46813 * 59.99401 * 1 2 3 32 32 H 1.08993 * 109.47363 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46352 * 294.99825 * 4 2 1 34 34 H 1.08993 * 109.47264 * 54.99697 * 4 2 1 35 35 H 1.07993 * 125.96194 * 0.04488 * 6 5 4 36 36 H 1.07998 * 125.52758 * 179.80089 * 8 7 6 37 37 H 0.96999 * 119.99967 * 94.72069 * 10 2 1 38 38 H 1.09002 * 109.58550 * 353.37140 * 16 15 13 39 39 H 1.09005 * 109.58564 * 113.65245 * 16 15 13 40 40 H 1.09004 * 109.49195 * 65.31999 * 17 16 15 41 41 H 1.08998 * 109.49751 * 185.41013 * 17 16 15 42 42 H 1.09006 * 109.45738 * 181.38315 * 18 17 16 43 43 H 1.08996 * 109.45882 * 301.35684 * 18 17 16 44 44 H 0.97002 * 120.00258 * 180.02562 * 24 23 21 45 45 H 1.09001 * 109.58229 * 246.21015 * 29 15 13 46 46 H 1.08998 * 109.58543 * 6.62985 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.6178 -1.3111 6 6 4.3764 -1.6330 -1.4037 7 7 5.5824 -1.1266 -1.4353 8 6 5.5169 0.2019 -1.3568 9 7 4.2625 0.5612 -1.2790 10 7 2.0184 -0.6907 1.1961 11 6 2.1471 -0.0184 2.3571 12 8 1.8581 1.1589 2.4117 13 6 2.6448 -0.7232 3.5774 14 8 3.0426 -1.8668 3.4978 15 7 2.6520 -0.0884 4.7663 16 6 2.0331 1.2362 4.9115 17 6 3.0612 2.1971 5.5170 18 6 3.5972 1.6072 6.8234 19 6 4.2924 0.2745 6.5360 20 1 5.1040 0.4331 5.8259 21 6 4.8481 -0.2899 7.8181 22 1 4.7189 0.2482 8.7456 23 6 5.5214 -1.4930 7.8071 24 7 5.6782 -2.1485 6.6778 25 14 6.2107 -2.1921 9.3963 26 1 5.1043 -2.4090 10.3626 27 1 6.8840 -3.4859 9.1168 28 1 7.1914 -1.2376 9.9726 29 6 3.2734 -0.7106 5.9434 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7516 -1.7714 -1.2057 34 1 1.6054 -0.2616 -2.1370 35 1 4.1282 -2.6831 -1.4472 36 1 6.3630 0.8731 -1.3580 37 1 2.2452 -1.6328 1.1534 38 1 1.7216 1.6031 3.9335 39 1 1.1659 1.1645 5.5680 40 1 3.8844 2.3377 4.8165 41 1 2.5868 3.1574 5.7190 42 1 4.3109 2.3003 7.2689 43 1 2.7702 1.4435 7.5142 44 1 6.1516 -2.9951 6.6700 45 1 2.5067 -0.9375 6.6842 46 1 3.7805 -1.6287 5.6465 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118604850.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:09 Heat of formation + Delta-G solvation = 14.013906 kcal Electronic energy + Delta-G solvation = -29823.268705 eV Core-core repulsion = 25749.715411 eV Total energy + Delta-G solvation = -4073.553294 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.99602 -42.01488 -40.00528 -38.57704 -37.67128 -35.29606 -34.39224 -33.48963 -32.17551 -31.98621 -31.59294 -27.76315 -27.68532 -26.86441 -24.82609 -23.57506 -23.26424 -22.93178 -21.90288 -21.68267 -20.50743 -19.02913 -18.41427 -18.18374 -17.96729 -17.15244 -16.91048 -16.65778 -16.49598 -16.26740 -15.75112 -15.57099 -15.33501 -15.02888 -14.90785 -14.60759 -14.47667 -14.36536 -14.05481 -13.81816 -13.65083 -13.49814 -13.22188 -12.97079 -12.86594 -12.74112 -12.53419 -12.32540 -12.21182 -12.06978 -11.75773 -11.65544 -11.20104 -11.02180 -11.01889 -10.84985 -10.70101 -10.57337 -10.36489 -10.03723 -9.58588 -8.14243 -6.31303 0.30524 0.69174 1.26237 1.41039 1.42579 1.45476 1.50970 2.02369 2.11067 2.39702 2.51595 3.13788 3.24519 3.29787 3.54167 3.77136 3.99915 4.10014 4.12094 4.14455 4.21820 4.28802 4.40433 4.53670 4.57708 4.62868 4.69557 4.77262 4.86131 4.96542 5.01184 5.12156 5.19228 5.23431 5.28013 5.30292 5.36612 5.44696 5.49776 5.53340 5.79494 5.89675 5.92287 5.92672 6.26333 6.40057 6.69880 6.80311 6.93844 7.13026 7.38827 8.89908 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013356 B = 0.003296 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.990284 B = 8493.058991 C = 9516.649204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.079 0.921 4 C 0.119 3.881 5 N -0.381 5.381 6 C 0.258 3.742 7 N -0.583 5.583 8 C 0.185 3.815 9 N -0.344 5.344 10 N -0.682 5.682 11 C 0.523 3.477 12 O -0.518 6.518 13 C 0.483 3.517 14 O -0.558 6.558 15 N -0.575 5.575 16 C 0.050 3.950 17 C -0.121 4.121 18 C -0.106 4.106 19 C 0.039 3.961 20 H -0.015 1.015 21 C -0.538 4.538 22 H 0.063 0.937 23 C 0.012 3.988 24 N -0.916 5.916 25 Si 0.961 3.039 26 H -0.266 1.266 27 H -0.287 1.287 28 H -0.270 1.270 29 C 0.123 3.877 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.260 0.740 36 H 0.228 0.772 37 H 0.415 0.585 38 H 0.155 0.845 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.098 0.902 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.262 0.738 45 H 0.046 0.954 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.248 2.567 -18.902 23.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.097 0.903 4 C -0.002 4.002 5 N -0.172 5.172 6 C -0.038 4.038 7 N -0.311 5.311 8 C -0.118 4.118 9 N -0.172 5.172 10 N -0.335 5.335 11 C 0.305 3.695 12 O -0.396 6.396 13 C 0.266 3.734 14 O -0.438 6.438 15 N -0.306 5.306 16 C -0.070 4.070 17 C -0.159 4.159 18 C -0.144 4.144 19 C 0.020 3.980 20 H 0.003 0.997 21 C -0.577 4.577 22 H 0.082 0.918 23 C -0.188 4.188 24 N -0.554 5.554 25 Si 0.785 3.215 26 H -0.191 1.191 27 H -0.212 1.212 28 H -0.195 1.195 29 C 0.001 3.999 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.103 0.897 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.276 0.724 36 H 0.245 0.755 37 H 0.253 0.747 38 H 0.171 0.829 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.117 0.883 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.214 3.205 -18.972 23.341 hybrid contribution 1.041 -1.100 1.195 1.930 sum -12.172 2.105 -17.777 21.648 Atomic orbital electron populations 1.22105 0.90977 1.04373 1.03881 1.21598 0.96579 0.97471 0.82145 0.90254 1.22619 0.72758 1.06002 0.98795 1.50687 1.08851 1.03870 1.53761 1.26909 0.84094 0.98154 0.94658 1.70522 1.24908 1.09542 1.26127 1.26396 0.95309 0.92060 0.98006 1.77956 1.05077 1.07740 1.26460 1.45837 1.64509 1.14777 1.08393 1.19935 0.78072 0.86591 0.84918 1.90280 1.50492 1.15875 1.82974 1.20525 0.80875 0.86548 0.85461 1.90719 1.48895 1.18337 1.85835 1.48479 1.53419 1.19911 1.08782 1.23303 0.95346 0.80828 1.07545 1.21818 0.98351 0.99125 0.96569 1.21555 0.99389 0.96594 0.96824 1.18974 0.92152 0.92184 0.94669 0.99727 1.21462 1.35683 1.05975 0.94543 0.91846 1.25896 0.96027 0.97361 0.99467 1.70052 1.42158 1.15783 1.27443 0.85571 0.78792 0.77419 0.79668 1.19066 1.21212 1.19472 1.22026 0.94494 0.99347 0.84028 0.93216 0.88231 0.89701 0.83059 0.84651 0.72446 0.75549 0.74741 0.82932 0.90870 0.94045 0.88326 0.92881 0.92192 0.92914 0.93575 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.48 71.98 0.68 -0.85 16 2 C 0.13 1.91 2.71 44.99 0.12 2.03 16 3 H 0.08 1.75 7.53 -2.39 -0.02 1.73 16 4 C 0.12 0.98 6.04 86.38 0.52 1.50 16 5 N -0.38 -6.64 3.62 -352.07 -1.27 -7.92 16 6 C 0.26 4.55 12.63 180.36 2.28 6.82 16 7 N -0.58 -14.84 11.19 -204.00 -2.28 -17.12 16 8 C 0.19 4.65 13.03 180.76 2.36 7.01 16 9 N -0.34 -8.61 12.53 -61.24 -0.77 -9.38 16 10 N -0.68 -15.36 4.99 -443.86 -2.22 -17.57 16 11 C 0.52 16.84 7.74 87.27 0.68 17.51 16 12 O -0.52 -17.22 12.76 -3.25 -0.04 -17.26 16 13 C 0.48 20.04 7.74 87.27 0.68 20.71 16 14 O -0.56 -26.28 15.94 -3.23 -0.05 -26.33 16 15 N -0.57 -24.75 2.97 -819.62 -2.43 -27.18 16 16 C 0.05 1.76 6.27 86.36 0.54 2.30 16 17 C -0.12 -4.27 6.08 30.67 0.19 -4.09 16 18 C -0.11 -4.42 5.10 30.62 0.16 -4.26 16 19 C 0.04 2.07 2.26 -11.32 -0.03 2.04 16 20 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 21 C -0.54 -30.12 8.56 25.60 0.22 -29.91 16 22 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 23 C 0.01 0.68 5.30 84.66 0.45 1.13 16 24 N -0.92 -55.50 11.41 21.45 0.24 -55.26 16 25 Si 0.96 44.28 29.54 68.60 2.03 46.31 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 29 C 0.12 6.26 5.41 86.51 0.47 6.73 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.15 0.02 8.09 -2.39 -0.02 0.00 16 34 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.26 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.23 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.42 8.57 8.09 -92.71 -0.75 7.82 16 38 H 0.15 5.15 3.78 -78.90 -0.30 4.85 16 39 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 41 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 45 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.08 4.95 5.19 -2.39 -0.01 4.94 16 Total: -1.00 -82.18 379.04 2.48 -79.69 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: -0.03 Total: 23.34 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 9.31 Total: 28.68 kcal Atomic # 7 Polarization: -125.70 SS G_CDS: -8.72 Total: -134.43 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.09 Total: -43.59 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -82.18 2.48 -79.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118604850.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.708 kcal (2) G-P(sol) polarization free energy of solvation -82.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds