Wall clock time and date at job start Tue Mar 31 2020 20:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47149 * 2 1 4 4 C 1.46503 * 120.00001 * 270.00300 * 3 2 1 5 5 C 1.50698 * 109.47133 * 269.99849 * 4 3 2 6 6 H 1.08005 * 119.99969 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00309 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99744 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00463 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47482 * 59.99172 * 9 7 5 11 11 H 1.48493 * 109.47329 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46682 * 299.99658 * 9 7 5 13 13 C 1.34773 * 119.99625 * 89.99756 * 3 2 1 14 14 O 1.21287 * 119.99477 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00411 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47209 * 179.97438 * 15 13 3 17 17 C 1.46908 * 110.99867 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46931 * 179.97438 * 17 16 15 19 19 N 1.46498 * 109.46777 * 180.02562 * 18 17 16 20 20 C 1.34776 * 119.99780 * 180.02562 * 19 18 17 21 21 O 1.21515 * 120.00160 * 359.97438 * 20 19 18 22 22 C 1.48148 * 120.00017 * 180.02562 * 20 19 18 23 23 C 1.39443 * 120.09698 * 180.02562 * 22 20 19 24 24 N 1.32079 * 119.87260 * 179.97438 * 23 22 20 25 25 C 1.32142 * 120.07304 * 359.97438 * 24 23 22 26 26 C 1.38724 * 120.19178 * 0.28422 * 25 24 23 27 27 N 1.31797 * 120.12804 * 359.43155 * 26 25 24 28 28 H 1.09005 * 109.47542 * 60.00202 * 1 2 3 29 29 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47291 * 299.99698 * 1 2 3 31 31 H 1.09005 * 109.47291 * 240.00302 * 2 1 3 32 32 H 1.08995 * 109.47661 * 120.00354 * 2 1 3 33 33 H 1.08993 * 109.47067 * 29.99862 * 4 3 2 34 34 H 1.08999 * 109.46575 * 149.99550 * 4 3 2 35 35 H 0.97001 * 120.00045 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47344 * 59.99451 * 15 13 3 37 37 H 1.09008 * 109.46916 * 299.99498 * 15 13 3 38 38 H 1.00894 * 110.99842 * 303.94550 * 16 15 13 39 39 H 1.09001 * 109.46898 * 60.00317 * 17 16 15 40 40 H 1.08995 * 109.47248 * 300.00597 * 17 16 15 41 41 H 1.09001 * 109.46959 * 60.00491 * 18 17 16 42 42 H 1.09002 * 109.46922 * 300.00443 * 18 17 16 43 43 H 0.97003 * 120.00291 * 359.97438 * 19 18 17 44 44 H 1.07999 * 120.06715 * 359.94846 * 23 22 20 45 45 H 1.08002 * 119.90049 * 180.02562 * 25 24 23 46 46 H 1.08008 * 119.93444 * 179.69733 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6856 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6176 9 14 5.9132 2.0965 -3.4172 10 1 6.1401 0.6398 -3.5955 11 1 6.1607 2.7966 -4.7031 12 1 6.8411 2.6189 -2.3820 13 6 2.2428 2.0165 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3108 2.2058 3.5889 17 6 2.0773 1.5455 4.8802 18 6 2.4200 2.5115 6.0162 19 7 2.1876 1.8528 7.3040 20 6 2.4230 2.5171 8.4528 21 8 2.8284 3.6622 8.4204 22 6 2.1886 1.8508 9.7551 23 6 2.4310 2.5364 10.9449 24 7 2.2200 1.9383 12.1035 25 6 1.7797 0.6928 12.1352 26 6 1.5427 0.0063 10.9533 27 7 1.7453 0.5975 9.7929 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0953 3.1411 -1.1383 35 1 3.6754 3.5178 -4.4431 36 1 2.6226 0.4187 2.5298 37 1 0.9442 1.0115 2.5302 38 1 3.2591 2.5438 3.5215 39 1 2.7078 0.6595 4.9545 40 1 1.0299 1.2533 4.9547 41 1 1.7897 3.3977 5.9421 42 1 3.4675 2.8032 5.9414 43 1 1.8637 0.9388 7.3298 44 1 2.7909 3.5543 10.9192 45 1 1.6077 0.2066 13.0841 46 1 1.1875 -1.0132 10.9841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122826892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:34 Heat of formation + Delta-G solvation = -13.959255 kcal Electronic energy + Delta-G solvation = -27225.129313 eV Core-core repulsion = 23150.363011 eV Total energy + Delta-G solvation = -4074.766302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.79668 -39.73462 -39.13275 -36.64901 -35.32429 -35.10105 -34.30081 -32.78763 -32.33289 -30.14987 -29.77119 -27.51731 -26.13605 -25.29432 -24.75016 -23.02744 -22.55946 -22.11546 -21.34494 -18.82347 -18.40225 -18.09803 -17.36153 -16.57547 -16.51128 -16.29264 -16.16551 -15.87043 -15.65742 -15.37267 -14.98627 -14.56715 -14.33541 -14.10854 -13.69346 -13.50503 -13.37726 -13.27030 -13.24671 -12.43515 -12.33765 -12.24870 -11.98698 -11.92702 -11.79206 -11.64453 -11.45387 -11.17116 -10.92537 -10.83318 -10.74223 -10.52320 -10.12898 -10.09012 -9.75307 -9.64828 -9.44486 -8.95084 -8.43706 -8.42683 -7.65353 -6.03680 -4.08665 -0.21067 0.40877 2.24120 2.49250 3.20673 3.31356 3.33308 3.36299 3.37569 3.44880 3.58050 3.73599 3.84138 4.20331 4.37306 4.46475 4.51189 4.56568 4.69871 4.85529 4.90399 5.07446 5.20224 5.24459 5.30676 5.42515 5.48039 5.60867 5.63973 5.65118 5.71578 5.79453 5.96274 6.01413 6.22074 6.45622 6.46923 6.73975 6.91099 7.10405 7.13307 7.29269 7.46815 7.55928 7.69428 7.92693 8.24187 8.43622 8.90645 9.11583 9.56392 11.04245 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.001693 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.917581 B =16537.996628 C =17193.180076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.050 3.950 18 C 0.117 3.883 19 N -0.706 5.706 20 C 0.574 3.426 21 O -0.522 6.522 22 C 0.030 3.970 23 C 0.111 3.889 24 N -0.439 5.439 25 C 0.073 3.927 26 C 0.050 3.950 27 N -0.413 5.413 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.355 0.645 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.410 0.590 44 H 0.185 0.815 45 H 0.178 0.822 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.798 -11.839 28.390 31.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.303 5.303 17 C -0.080 4.080 18 C -0.006 4.006 19 N -0.358 5.358 20 C 0.357 3.643 21 O -0.397 6.397 22 C -0.111 4.111 23 C -0.048 4.048 24 N -0.153 5.153 25 C -0.088 4.088 26 C -0.112 4.112 27 N -0.131 5.131 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.175 0.825 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.092 0.908 43 H 0.246 0.754 44 H 0.202 0.798 45 H 0.195 0.805 46 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.888 -9.916 28.080 30.566 hybrid contribution 1.460 -1.500 -0.342 2.121 sum -5.429 -11.416 27.738 30.483 Atomic orbital electron populations 1.22227 0.96791 1.01342 1.02424 1.21406 0.93523 0.84307 1.02547 1.48251 1.64010 1.13181 1.07699 1.19251 0.96153 0.93698 0.78067 1.21392 0.96957 1.31990 1.06285 0.92624 1.24934 0.97813 0.94933 0.96413 1.69925 1.35685 1.33300 1.14364 0.86564 0.84845 0.78171 0.77849 1.20328 1.21168 1.20204 1.20133 0.79027 0.87100 0.84851 1.90689 1.45049 1.17690 1.86897 1.21903 1.02419 0.94226 0.90396 1.59962 1.33120 1.37596 0.99582 1.22065 1.01866 0.95024 0.89015 1.21386 1.02615 0.96381 0.80248 1.45712 1.66598 1.18114 1.05344 1.17582 0.78429 0.85505 0.82773 1.90854 1.45349 1.16679 1.86817 1.22213 1.00656 0.92197 0.96011 1.23903 0.92587 1.01450 0.86909 1.68665 1.08909 1.09801 1.27972 1.24170 0.92963 0.91141 1.00569 1.23886 0.97363 1.01725 0.88224 1.68332 1.06787 1.08323 1.29684 0.91980 0.92241 0.93030 0.89966 0.91960 0.95052 0.93854 0.92667 0.92775 0.88626 0.82462 0.94564 0.90207 0.89626 0.90774 0.75401 0.79847 0.80538 0.80375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.18 10.24 37.15 0.38 -1.80 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.34 2.46 -175.07 -0.43 -12.76 16 4 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 5 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 9 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.50 10.21 7.71 -10.99 -0.08 10.13 16 14 O -0.53 -13.20 15.78 5.55 0.09 -13.11 16 15 C 0.04 0.60 4.72 -4.98 -0.02 0.58 16 16 N -0.67 -8.99 6.13 -115.05 -0.70 -9.70 16 17 C 0.05 0.47 5.80 -3.82 -0.02 0.45 16 18 C 0.12 1.16 5.93 -4.04 -0.02 1.14 16 19 N -0.71 -6.21 5.55 -61.15 -0.34 -6.55 16 20 C 0.57 6.02 7.81 -12.19 -0.10 5.92 16 21 O -0.52 -7.07 16.35 5.35 0.09 -6.99 16 22 C 0.03 0.26 6.75 -82.84 -0.56 -0.30 16 23 C 0.11 0.91 10.77 -17.00 -0.18 0.72 16 24 N -0.44 -3.30 10.49 -12.71 -0.13 -3.43 16 25 C 0.07 0.32 11.23 -17.24 -0.19 0.13 16 26 C 0.05 0.22 11.22 -17.39 -0.20 0.02 16 27 N -0.41 -2.95 9.71 -9.61 -0.09 -3.05 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.63 7.22 -51.93 -0.38 0.25 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.05 0.66 7.40 -51.93 -0.38 0.28 16 37 H 0.10 1.16 7.19 -51.92 -0.37 0.79 16 38 H 0.36 5.11 8.43 -39.29 -0.33 4.78 16 39 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.41 2.84 7.82 -40.82 -0.32 2.52 16 44 H 0.18 1.38 7.65 -52.49 -0.40 0.97 16 45 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 46 H 0.18 0.13 8.06 -52.48 -0.42 -0.30 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -36.56 395.54 -7.99 -44.55 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.67 Total: 2.65 kcal Atomic # 6 Polarization: 12.93 SS G_CDS: -1.47 Total: 11.46 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.96 Total: -61.34 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: 0.18 Total: -20.10 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.56 -7.99 -44.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122826892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.590 kcal (2) G-P(sol) polarization free energy of solvation -36.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds