Wall clock time and date at job start Tue Mar 31 2020 20:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46503 * 109.47149 * 2 1 4 4 C 1.46503 * 120.00001 * 270.00300 * 3 2 1 5 5 C 1.50698 * 109.47133 * 269.99849 * 4 3 2 6 6 H 1.08005 * 119.99969 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00309 * 180.02562 * 5 4 3 8 8 N 1.31523 * 119.99744 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00463 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47482 * 59.99172 * 9 7 5 11 11 H 1.48493 * 109.47329 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46682 * 299.99658 * 9 7 5 13 13 C 1.34773 * 119.99625 * 89.99756 * 3 2 1 14 14 O 1.21287 * 119.99477 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00411 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.47209 * 179.97438 * 15 13 3 17 17 C 1.46908 * 110.99867 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46931 * 179.97438 * 17 16 15 19 19 N 1.46498 * 109.46777 * 180.02562 * 18 17 16 20 20 C 1.34776 * 119.99780 * 180.02562 * 19 18 17 21 21 O 1.21515 * 120.00160 * 359.97438 * 20 19 18 22 22 C 1.48148 * 120.00017 * 180.02562 * 20 19 18 23 23 C 1.39443 * 120.09698 * 180.02562 * 22 20 19 24 24 N 1.32079 * 119.87260 * 179.97438 * 23 22 20 25 25 C 1.32142 * 120.07304 * 359.97438 * 24 23 22 26 26 C 1.38724 * 120.19178 * 0.28422 * 25 24 23 27 27 N 1.31797 * 120.12804 * 359.43155 * 26 25 24 28 28 H 1.09005 * 109.47542 * 60.00202 * 1 2 3 29 29 H 1.09000 * 109.47264 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47291 * 299.99698 * 1 2 3 31 31 H 1.09005 * 109.47291 * 240.00302 * 2 1 3 32 32 H 1.08995 * 109.47661 * 120.00354 * 2 1 3 33 33 H 1.08993 * 109.47067 * 29.99862 * 4 3 2 34 34 H 1.08999 * 109.46575 * 149.99550 * 4 3 2 35 35 H 0.97001 * 120.00045 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47344 * 59.99451 * 15 13 3 37 37 H 1.09008 * 109.46916 * 299.99498 * 15 13 3 38 38 H 1.00894 * 110.99842 * 303.94550 * 16 15 13 39 39 H 1.09001 * 109.46898 * 60.00317 * 17 16 15 40 40 H 1.08995 * 109.47248 * 300.00597 * 17 16 15 41 41 H 1.09001 * 109.46959 * 60.00491 * 18 17 16 42 42 H 1.09002 * 109.46922 * 300.00443 * 18 17 16 43 43 H 0.97003 * 120.00291 * 359.97438 * 19 18 17 44 44 H 1.07999 * 120.06715 * 359.94846 * 23 22 20 45 45 H 1.08002 * 119.90049 * 180.02562 * 25 24 23 46 46 H 1.08008 * 119.93444 * 179.69733 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6856 1.8351 -1.7038 6 1 4.3428 1.2310 -1.0958 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1267 -3.6176 9 14 5.9132 2.0965 -3.4172 10 1 6.1401 0.6398 -3.5955 11 1 6.1607 2.7966 -4.7031 12 1 6.8411 2.6189 -2.3820 13 6 2.2428 2.0165 1.1672 14 8 2.6476 3.1598 1.1672 15 6 1.9922 1.3060 2.4723 16 7 2.3108 2.2058 3.5889 17 6 2.0773 1.5455 4.8802 18 6 2.4200 2.5115 6.0162 19 7 2.1876 1.8528 7.3040 20 6 2.4230 2.5171 8.4528 21 8 2.8284 3.6622 8.4204 22 6 2.1886 1.8508 9.7551 23 6 2.4310 2.5364 10.9449 24 7 2.2200 1.9383 12.1035 25 6 1.7797 0.6928 12.1352 26 6 1.5427 0.0063 10.9533 27 7 1.7453 0.5975 9.7929 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.5816 1.6878 -2.0283 34 1 2.0953 3.1411 -1.1383 35 1 3.6754 3.5178 -4.4431 36 1 2.6226 0.4187 2.5298 37 1 0.9442 1.0115 2.5302 38 1 3.2591 2.5438 3.5215 39 1 2.7078 0.6595 4.9545 40 1 1.0299 1.2533 4.9547 41 1 1.7897 3.3977 5.9421 42 1 3.4675 2.8032 5.9414 43 1 1.8637 0.9388 7.3298 44 1 2.7909 3.5543 10.9192 45 1 1.6077 0.2066 13.0841 46 1 1.1875 -1.0132 10.9841 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122826892.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:33 Heat of formation + Delta-G solvation = -44.597575 kcal Electronic energy + Delta-G solvation = -27226.457890 eV Core-core repulsion = 23150.363011 eV Total energy + Delta-G solvation = -4076.094879 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.30814 -40.74088 -40.44534 -37.64517 -36.85606 -35.79010 -35.16331 -34.82469 -32.84517 -31.64222 -30.78554 -29.13522 -27.15926 -26.09710 -25.46495 -24.60157 -23.81654 -23.15311 -22.10170 -20.00076 -19.35487 -18.68622 -18.59589 -17.91430 -17.73377 -17.42044 -17.22104 -16.90333 -16.68445 -16.36050 -15.98605 -15.81474 -15.24810 -15.17564 -14.89824 -14.62244 -14.51921 -14.44583 -14.11295 -13.87614 -13.51485 -13.45524 -13.21376 -13.06929 -12.82972 -12.67602 -12.62905 -12.50854 -12.44359 -12.40605 -12.12715 -11.84274 -11.72290 -11.64168 -10.63723 -10.60224 -10.56619 -10.24704 -10.21680 -9.45051 -9.38914 -8.21436 -6.36637 -0.71648 -0.04116 1.36153 1.40664 1.47850 1.56001 1.74764 1.88721 2.29178 2.43988 2.68603 2.84181 3.07718 3.16223 3.31320 3.38266 3.72037 3.74525 3.86860 4.07352 4.08785 4.13903 4.31199 4.35541 4.40380 4.46850 4.51898 4.52278 4.69549 4.85290 4.89159 4.95964 5.02307 5.07924 5.18960 5.23974 5.25800 5.42592 5.59073 5.82096 5.92750 5.99280 6.07782 6.23131 6.29497 6.60373 6.71667 6.85639 6.96889 7.29719 7.54540 8.85200 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021096 B = 0.001693 C = 0.001628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.917581 B =16537.996628 C =17193.180076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.968 3.032 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.491 3.509 14 O -0.589 6.589 15 C 0.061 3.939 16 N -0.691 5.691 17 C 0.061 3.939 18 C 0.123 3.877 19 N -0.693 5.693 20 C 0.571 3.429 21 O -0.565 6.565 22 C 0.011 3.989 23 C 0.098 3.902 24 N -0.463 5.463 25 C 0.085 3.915 26 C 0.060 3.940 27 N -0.423 5.423 28 H 0.034 0.966 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.104 0.896 33 H 0.020 0.980 34 H -0.007 1.007 35 H 0.266 0.734 36 H 0.085 0.915 37 H 0.125 0.875 38 H 0.346 0.654 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.422 0.578 44 H 0.176 0.824 45 H 0.219 0.781 46 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.189 -16.018 30.644 35.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.023 4.023 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.193 4.193 8 N -0.568 5.568 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.205 1.205 12 H -0.204 1.204 13 C 0.280 3.720 14 O -0.469 6.469 15 C -0.070 4.070 16 N -0.325 5.325 17 C -0.068 4.068 18 C -0.002 4.002 19 N -0.344 5.344 20 C 0.355 3.645 21 O -0.443 6.443 22 C -0.128 4.128 23 C -0.060 4.060 24 N -0.178 5.178 25 C -0.077 4.077 26 C -0.103 4.103 27 N -0.141 5.141 28 H 0.054 0.946 29 H 0.115 0.885 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.038 0.962 34 H 0.011 0.989 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.143 0.857 38 H 0.165 0.835 39 H 0.078 0.922 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.260 0.740 44 H 0.193 0.807 45 H 0.235 0.765 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -7.313 -14.158 30.332 34.263 hybrid contribution 1.492 -0.294 -0.918 1.776 sum -5.821 -14.452 29.413 33.285 Atomic orbital electron populations 1.22162 0.94659 1.03488 1.01655 1.21762 0.95252 0.81245 1.04014 1.48280 1.64085 1.15144 1.06116 1.18660 0.95207 0.91428 0.80592 1.21699 0.97914 1.32011 1.06516 0.92710 1.25885 1.02418 0.94514 0.96504 1.70057 1.37812 1.34157 1.14808 0.85464 0.78984 0.79030 0.77297 1.18340 1.20481 1.20380 1.21337 0.77397 0.86675 0.86636 1.90655 1.47695 1.20620 1.87937 1.21812 1.04687 0.93953 0.86597 1.59933 1.32735 1.38727 1.01063 1.22045 1.03420 0.94911 0.86426 1.21215 1.01470 0.96257 0.81215 1.45563 1.65928 1.18417 1.04529 1.17937 0.77604 0.85105 0.83805 1.90822 1.47399 1.18556 1.87520 1.21829 1.02923 0.93224 0.94820 1.23811 0.93292 1.01505 0.87356 1.68696 1.10028 1.11529 1.27500 1.24936 0.90348 0.89903 1.02530 1.24654 0.95461 1.03096 0.87135 1.68325 1.07069 1.07477 1.31253 0.94640 0.88533 0.91960 0.91155 0.87793 0.96166 0.98884 0.92477 0.89686 0.85693 0.83523 0.92199 0.88322 0.91618 0.92008 0.74007 0.80702 0.76491 0.76109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.24 71.98 0.74 -3.01 16 2 C 0.10 2.84 5.93 86.38 0.51 3.35 16 3 N -0.60 -25.09 2.46 -826.17 -2.03 -27.11 16 4 C 0.26 14.32 5.16 85.63 0.44 14.76 16 5 C -0.54 -31.46 9.39 25.60 0.24 -31.22 16 6 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 7 C 0.01 0.33 5.46 84.65 0.46 0.79 16 8 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 9 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 13 C 0.49 19.98 7.71 87.66 0.68 20.66 16 14 O -0.59 -30.87 15.78 -3.05 -0.05 -30.91 16 15 C 0.06 1.56 4.72 85.55 0.40 1.96 16 16 N -0.69 -17.71 6.13 -517.91 -3.17 -20.88 16 17 C 0.06 0.99 5.80 86.30 0.50 1.49 16 18 C 0.12 2.40 5.93 86.38 0.51 2.91 16 19 N -0.69 -11.73 5.55 -465.68 -2.58 -14.31 16 20 C 0.57 12.31 7.81 86.88 0.68 12.99 16 21 O -0.56 -16.40 16.35 -3.76 -0.06 -16.46 16 22 C 0.01 0.19 6.75 41.89 0.28 0.47 16 23 C 0.10 1.65 10.77 84.95 0.92 2.56 16 24 N -0.46 -6.40 10.49 -194.12 -2.04 -8.44 16 25 C 0.08 0.48 11.23 84.76 0.95 1.43 16 26 C 0.06 0.30 11.22 84.81 0.95 1.26 16 27 N -0.42 -5.14 9.71 -184.33 -1.79 -6.93 16 28 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.32 7.22 -2.38 -0.02 1.30 16 31 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 32 H 0.10 2.12 6.44 -2.39 -0.02 2.11 16 33 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 34 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 35 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.09 1.69 7.40 -2.39 -0.02 1.67 16 37 H 0.13 2.48 7.19 -2.38 -0.02 2.47 16 38 H 0.35 9.97 8.43 -89.70 -0.76 9.22 16 39 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.42 5.02 7.82 -92.71 -0.73 4.30 16 44 H 0.18 2.99 7.65 -2.91 -0.02 2.96 16 45 H 0.22 -0.69 8.06 -2.91 -0.02 -0.72 16 46 H 0.22 -0.90 8.06 -2.91 -0.02 -0.93 16 Total: -1.00 -87.00 395.54 -1.61 -88.61 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -0.46 Total: 15.44 kcal Atomic # 6 Polarization: 22.16 SS G_CDS: 8.27 Total: 30.42 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -11.33 Total: -134.32 kcal Atomic # 8 Polarization: -47.27 SS G_CDS: -0.11 Total: -47.37 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -87.00 -1.61 -88.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122826892.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.011 kcal (2) G-P(sol) polarization free energy of solvation -87.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds