Wall clock time and date at job start Tue Mar 31 2020 18:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21289 * 119.99769 * 2 1 4 4 N 1.34773 * 120.00181 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99947 * 179.72727 * 4 2 1 6 6 H 1.08996 * 109.47273 * 35.27217 * 5 4 2 7 7 C 1.53001 * 109.46511 * 275.27401 * 5 4 2 8 8 C 1.50699 * 109.47114 * 155.27887 * 5 4 2 9 9 O 1.21279 * 120.00182 * 359.97438 * 8 5 4 10 10 N 1.34776 * 119.99985 * 179.97438 * 8 5 4 11 11 C 1.46502 * 119.99919 * 179.97438 * 10 8 5 12 12 C 1.50704 * 109.46972 * 179.97438 * 11 10 8 13 13 C 1.40071 * 126.12527 * 259.69291 * 12 11 10 14 14 N 1.31010 * 108.25590 * 179.97438 * 13 12 11 15 15 N 1.39744 * 108.17575 * 0.52620 * 14 13 12 16 16 C 1.34640 * 126.12210 * 79.99962 * 12 11 10 17 17 C 1.51035 * 127.91366 * 359.44895 * 16 12 11 18 18 N 1.47497 * 106.99676 * 169.56767 * 17 16 12 19 19 C 1.36941 * 121.01011 * 222.97173 * 18 17 16 20 20 H 1.08001 * 120.00220 * 155.89919 * 19 18 17 21 21 C 1.38815 * 119.99767 * 335.89639 * 19 18 17 22 22 N 1.31611 * 120.00368 * 344.44947 * 21 19 18 23 23 Si 1.86803 * 119.99659 * 164.44432 * 21 19 18 24 24 H 1.48497 * 109.47335 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47105 * 120.00280 * 23 21 19 26 26 H 1.48494 * 109.47011 * 240.00133 * 23 21 19 27 27 C 1.47080 * 117.97822 * 42.97475 * 18 17 16 28 28 C 1.46549 * 127.32775 * 179.23566 * 15 14 13 29 29 H 1.08997 * 109.46693 * 270.00219 * 1 2 3 30 30 H 1.08996 * 109.46892 * 29.99928 * 1 2 3 31 31 H 1.09000 * 109.47066 * 150.00039 * 1 2 3 32 32 H 0.97000 * 119.99601 * 359.97438 * 4 2 1 33 33 H 1.09007 * 109.46573 * 180.02562 * 7 5 4 34 34 H 1.08996 * 109.47202 * 299.99859 * 7 5 4 35 35 H 1.08998 * 109.47526 * 60.00380 * 7 5 4 36 36 H 0.96998 * 119.99888 * 359.97438 * 10 8 5 37 37 H 1.08996 * 109.47064 * 299.99895 * 11 10 8 38 38 H 1.08999 * 109.46745 * 60.00387 * 11 10 8 39 39 H 1.08006 * 125.87153 * 0.09016 * 13 12 11 40 40 H 1.09003 * 109.94755 * 288.93686 * 17 16 12 41 41 H 1.08997 * 109.94767 * 50.19195 * 17 16 12 42 42 H 0.96997 * 120.00535 * 179.97438 * 22 21 19 43 43 H 1.09011 * 109.51234 * 176.51934 * 27 18 17 44 44 H 1.08995 * 109.51340 * 56.37354 * 27 18 17 45 45 H 1.09002 * 109.50822 * 281.40410 * 28 15 14 46 46 H 1.09004 * 109.50766 * 41.53361 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6460 -1.1671 -0.0055 6 1 4.0117 -0.3265 0.5840 7 6 4.1499 -1.0385 -1.4444 8 6 4.1508 -2.4560 0.5902 9 8 3.3644 -3.2921 0.9818 10 7 5.4763 -2.6796 0.6879 11 6 5.9671 -3.9323 1.2676 12 6 7.4741 -3.9329 1.2601 13 6 8.2951 -4.5858 0.3319 14 7 9.5436 -4.3539 0.6537 15 7 9.5571 -3.5574 1.8019 16 6 8.2724 -3.3105 2.1479 17 6 7.8632 -2.4696 3.3339 18 7 9.0804 -2.2269 4.1308 19 6 9.0592 -2.3186 5.4969 20 1 9.9701 -2.5270 6.0384 21 6 7.8668 -2.1436 6.1858 22 7 6.8328 -1.5961 5.5832 23 14 7.7299 -2.6852 7.9684 24 1 9.0232 -3.2664 8.4099 25 1 7.3988 -1.5130 8.8179 26 1 6.6591 -3.7062 8.0946 27 6 10.3176 -1.8833 3.4135 28 6 10.7309 -3.0646 2.5278 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6959 -2.0072 0.0013 33 1 5.2400 -1.0390 -1.4490 34 1 3.7841 -1.8792 -2.0340 35 1 3.7848 -0.1063 -1.8754 36 1 6.1053 -2.0110 0.3744 37 1 5.6084 -4.0233 2.2928 38 1 5.6009 -4.7732 0.6785 39 1 7.9569 -5.1772 -0.5063 40 1 7.4474 -1.5218 2.9920 41 1 7.1270 -3.0052 3.9332 42 1 5.9995 -1.4742 6.0644 43 1 11.1094 -1.6738 4.1329 44 1 10.1465 -1.0035 2.7932 45 1 11.1364 -3.8632 3.1491 46 1 11.4881 -2.7366 1.8156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128178544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:09 Heat of formation + Delta-G solvation = 27.544103 kcal Electronic energy + Delta-G solvation = -29338.877348 eV Core-core repulsion = 25265.910767 eV Total energy + Delta-G solvation = -4072.966581 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.05687 -40.27275 -38.96657 -36.35220 -35.17825 -34.79744 -33.06780 -31.89724 -31.10218 -30.25775 -29.23370 -28.55642 -26.19194 -25.23791 -23.98599 -23.41881 -21.80962 -20.71128 -20.29460 -20.12044 -18.54626 -17.79820 -16.85185 -16.75375 -16.20561 -15.91010 -15.53864 -15.36478 -15.04537 -14.99271 -14.53778 -13.97063 -13.83527 -13.75582 -13.62081 -13.35777 -13.22022 -13.10633 -12.83189 -12.59128 -12.51164 -12.40382 -12.22147 -11.74615 -11.69625 -11.64044 -11.34219 -11.02435 -10.91567 -10.75103 -10.24055 -10.20549 -10.10889 -10.04530 -9.86730 -9.27448 -8.94830 -8.86702 -8.59637 -7.98580 -7.11394 -6.04065 -3.46916 2.36025 2.49672 2.68858 2.74587 2.96365 3.10902 3.27239 3.35536 3.37100 3.68816 4.29276 4.61584 4.75920 4.90066 4.93250 5.03329 5.03999 5.06524 5.17467 5.23328 5.33351 5.39631 5.46968 5.50952 5.57620 5.58646 5.67789 5.70077 5.80827 5.93831 6.05532 6.18855 6.24477 6.32410 6.39070 6.48070 6.57513 6.86948 7.03274 7.10539 7.39218 7.53356 7.57411 7.61774 8.06221 8.10133 8.18811 8.25960 8.89255 9.51742 10.04050 11.06893 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.003563 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.217015 B = 7857.539782 C = 9698.206817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.513 3.487 3 O -0.548 6.548 4 N -0.712 5.712 5 C 0.121 3.879 6 H 0.116 0.884 7 C -0.157 4.157 8 C 0.512 3.488 9 O -0.544 6.544 10 N -0.710 5.710 11 C 0.210 3.790 12 C -0.291 4.291 13 C 0.057 3.943 14 N -0.317 5.317 15 N -0.357 5.357 16 C 0.121 3.879 17 C 0.230 3.770 18 N -0.596 5.596 19 C -0.264 4.264 20 H 0.074 0.926 21 C 0.009 3.991 22 N -0.903 5.903 23 Si 0.908 3.092 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.286 1.286 27 C 0.129 3.871 28 C 0.113 3.887 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.410 0.590 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.402 0.598 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.176 0.824 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.259 0.741 43 H 0.085 0.915 44 H 0.037 0.963 45 H 0.076 0.924 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.769 -0.836 -13.248 14.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.300 3.700 3 O -0.426 6.426 4 N -0.366 5.366 5 C 0.012 3.988 6 H 0.133 0.867 7 C -0.216 4.216 8 C 0.296 3.704 9 O -0.422 6.422 10 N -0.361 5.361 11 C 0.087 3.913 12 C -0.303 4.303 13 C -0.130 4.130 14 N -0.137 5.137 15 N -0.138 5.138 16 C -0.011 4.011 17 C 0.103 3.897 18 N -0.319 5.319 19 C -0.393 4.393 20 H 0.092 0.908 21 C -0.191 4.191 22 N -0.546 5.546 23 Si 0.737 3.263 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.212 1.212 27 C 0.000 4.000 28 C -0.010 4.010 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.247 0.753 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.236 0.764 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.193 0.807 40 H 0.074 0.926 41 H 0.127 0.873 42 H 0.069 0.931 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.095 0.905 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.651 -0.823 -13.073 13.900 hybrid contribution -0.734 -0.326 0.970 1.260 sum -5.386 -1.149 -12.102 13.296 Atomic orbital electron populations 1.21861 0.91380 1.04755 1.05019 1.20827 0.90705 0.83219 0.75251 1.90736 1.70741 1.31371 1.49743 1.45848 1.05866 1.09661 1.75247 1.20788 0.82081 0.97467 0.98418 0.86658 1.22111 1.01830 1.03218 0.94407 1.20442 0.82986 0.88089 0.78835 1.90680 1.55444 1.46712 1.49366 1.46152 1.06191 1.21327 1.62448 1.19341 0.88023 0.84993 0.98938 1.19399 0.95167 1.13227 1.02492 1.23670 0.90092 0.99864 0.99378 1.77176 1.20937 1.14082 1.01522 1.48511 1.05904 1.39010 1.20394 1.22604 0.84527 0.96472 0.97485 1.19930 0.89926 0.94833 0.84984 1.44209 1.04385 1.80305 1.03000 1.19203 0.95607 1.43742 0.80734 0.90798 1.25037 0.97129 0.98515 0.98386 1.69940 1.03362 1.44280 1.37034 0.86141 0.77880 0.78176 0.84071 1.20156 1.21427 1.21249 1.21293 0.91806 0.92407 0.94472 1.22574 0.84998 0.99179 0.94271 0.88647 0.88882 0.90120 0.75329 0.90849 0.91843 0.90961 0.76369 0.90688 0.91159 0.80745 0.92557 0.87292 0.93073 0.89699 0.94547 0.90545 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.30 36.01 0.37 -0.88 16 2 C 0.51 6.03 7.90 -10.98 -0.09 5.95 16 3 O -0.55 -8.71 16.77 5.55 0.09 -8.62 16 4 N -0.71 -7.99 4.95 -54.93 -0.27 -8.26 16 5 C 0.12 1.46 2.98 -69.08 -0.21 1.25 16 6 H 0.12 1.55 7.58 -51.93 -0.39 1.16 16 7 C -0.16 -1.52 9.38 37.16 0.35 -1.17 16 8 C 0.51 7.15 7.22 -10.99 -0.08 7.07 16 9 O -0.54 -9.09 15.84 5.56 0.09 -9.00 16 10 N -0.71 -9.58 5.44 -61.47 -0.33 -9.92 16 11 C 0.21 3.17 5.95 -5.19 -0.03 3.14 16 12 C -0.29 -4.79 5.46 -105.21 -0.57 -5.36 16 13 C 0.06 0.88 11.97 -17.22 -0.21 0.68 16 14 N -0.32 -5.67 12.61 30.70 0.39 -5.28 16 15 N -0.36 -6.66 4.03 -56.90 -0.23 -6.89 16 16 C 0.12 2.32 6.71 -82.17 -0.55 1.77 16 17 C 0.23 5.07 5.11 -4.48 -0.02 5.05 16 18 N -0.60 -13.67 3.01 -172.93 -0.52 -14.19 16 19 C -0.26 -6.69 9.66 -15.06 -0.15 -6.83 16 20 H 0.07 1.82 7.88 -52.49 -0.41 1.41 16 21 C 0.01 0.23 5.00 -17.43 -0.09 0.14 16 22 N -0.90 -24.44 11.07 55.49 0.61 -23.82 16 23 Si 0.91 20.71 29.58 -169.99 -5.03 15.68 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.13 2.36 6.50 -3.56 -0.02 2.34 16 28 C 0.11 1.89 7.45 -3.85 -0.03 1.86 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.41 4.10 7.79 -40.82 -0.32 3.79 16 33 H 0.07 0.62 7.56 -51.93 -0.39 0.23 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.40 4.92 7.88 -40.82 -0.32 4.60 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.18 2.07 8.06 -52.48 -0.42 1.65 16 40 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.11 2.72 6.46 -51.93 -0.34 2.38 16 42 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.08 1.44 7.94 -51.92 -0.41 1.02 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -32.46 385.24 -7.52 -39.98 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -6.80 Total: 9.52 kcal Atomic # 6 Polarization: 16.31 SS G_CDS: -1.32 Total: 14.99 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -0.35 Total: -68.35 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.18 Total: -17.62 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.03 Total: 15.68 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.46 -7.52 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128178544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.524 kcal (2) G-P(sol) polarization free energy of solvation -32.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds