Wall clock time and date at job start Tue Mar 31 2020 18:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21289 * 119.99769 * 2 1 4 4 N 1.34773 * 120.00181 * 179.97438 * 2 1 3 5 5 C 1.46504 * 119.99947 * 179.72727 * 4 2 1 6 6 H 1.08996 * 109.47273 * 35.27217 * 5 4 2 7 7 C 1.53001 * 109.46511 * 275.27401 * 5 4 2 8 8 C 1.50699 * 109.47114 * 155.27887 * 5 4 2 9 9 O 1.21279 * 120.00182 * 359.97438 * 8 5 4 10 10 N 1.34776 * 119.99985 * 179.97438 * 8 5 4 11 11 C 1.46502 * 119.99919 * 179.97438 * 10 8 5 12 12 C 1.50704 * 109.46972 * 179.97438 * 11 10 8 13 13 C 1.40071 * 126.12527 * 259.69291 * 12 11 10 14 14 N 1.31010 * 108.25590 * 179.97438 * 13 12 11 15 15 N 1.39744 * 108.17575 * 0.52620 * 14 13 12 16 16 C 1.34640 * 126.12210 * 79.99962 * 12 11 10 17 17 C 1.51035 * 127.91366 * 359.44895 * 16 12 11 18 18 N 1.47497 * 106.99676 * 169.56767 * 17 16 12 19 19 C 1.36941 * 121.01011 * 222.97173 * 18 17 16 20 20 H 1.08001 * 120.00220 * 155.89919 * 19 18 17 21 21 C 1.38815 * 119.99767 * 335.89639 * 19 18 17 22 22 N 1.31611 * 120.00368 * 344.44947 * 21 19 18 23 23 Si 1.86803 * 119.99659 * 164.44432 * 21 19 18 24 24 H 1.48497 * 109.47335 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47105 * 120.00280 * 23 21 19 26 26 H 1.48494 * 109.47011 * 240.00133 * 23 21 19 27 27 C 1.47080 * 117.97822 * 42.97475 * 18 17 16 28 28 C 1.46549 * 127.32775 * 179.23566 * 15 14 13 29 29 H 1.08997 * 109.46693 * 270.00219 * 1 2 3 30 30 H 1.08996 * 109.46892 * 29.99928 * 1 2 3 31 31 H 1.09000 * 109.47066 * 150.00039 * 1 2 3 32 32 H 0.97000 * 119.99601 * 359.97438 * 4 2 1 33 33 H 1.09007 * 109.46573 * 180.02562 * 7 5 4 34 34 H 1.08996 * 109.47202 * 299.99859 * 7 5 4 35 35 H 1.08998 * 109.47526 * 60.00380 * 7 5 4 36 36 H 0.96998 * 119.99888 * 359.97438 * 10 8 5 37 37 H 1.08996 * 109.47064 * 299.99895 * 11 10 8 38 38 H 1.08999 * 109.46745 * 60.00387 * 11 10 8 39 39 H 1.08006 * 125.87153 * 0.09016 * 13 12 11 40 40 H 1.09003 * 109.94755 * 288.93686 * 17 16 12 41 41 H 1.08997 * 109.94767 * 50.19195 * 17 16 12 42 42 H 0.96997 * 120.00535 * 179.97438 * 22 21 19 43 43 H 1.09011 * 109.51234 * 176.51934 * 27 18 17 44 44 H 1.08995 * 109.51340 * 56.37354 * 27 18 17 45 45 H 1.09002 * 109.50822 * 281.40410 * 28 15 14 46 46 H 1.09004 * 109.50766 * 41.53361 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1810 -1.1672 0.0005 5 6 3.6460 -1.1671 -0.0055 6 1 4.0117 -0.3265 0.5840 7 6 4.1499 -1.0385 -1.4444 8 6 4.1508 -2.4560 0.5902 9 8 3.3644 -3.2921 0.9818 10 7 5.4763 -2.6796 0.6879 11 6 5.9671 -3.9323 1.2676 12 6 7.4741 -3.9329 1.2601 13 6 8.2951 -4.5858 0.3319 14 7 9.5436 -4.3539 0.6537 15 7 9.5571 -3.5574 1.8019 16 6 8.2724 -3.3105 2.1479 17 6 7.8632 -2.4696 3.3339 18 7 9.0804 -2.2269 4.1308 19 6 9.0592 -2.3186 5.4969 20 1 9.9701 -2.5270 6.0384 21 6 7.8668 -2.1436 6.1858 22 7 6.8328 -1.5961 5.5832 23 14 7.7299 -2.6852 7.9684 24 1 9.0232 -3.2664 8.4099 25 1 7.3988 -1.5130 8.8179 26 1 6.6591 -3.7062 8.0946 27 6 10.3176 -1.8833 3.4135 28 6 10.7309 -3.0646 2.5278 29 1 -0.3632 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6959 -2.0072 0.0013 33 1 5.2400 -1.0390 -1.4490 34 1 3.7841 -1.8792 -2.0340 35 1 3.7848 -0.1063 -1.8754 36 1 6.1053 -2.0110 0.3744 37 1 5.6084 -4.0233 2.2928 38 1 5.6009 -4.7732 0.6785 39 1 7.9569 -5.1772 -0.5063 40 1 7.4474 -1.5218 2.9920 41 1 7.1270 -3.0052 3.9332 42 1 5.9995 -1.4742 6.0644 43 1 11.1094 -1.6738 4.1329 44 1 10.1465 -1.0035 2.7932 45 1 11.1364 -3.8632 3.1491 46 1 11.4881 -2.7366 1.8156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128178544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:08 Heat of formation + Delta-G solvation = 3.413522 kcal Electronic energy + Delta-G solvation = -29339.923729 eV Core-core repulsion = 25265.910767 eV Total energy + Delta-G solvation = -4074.012962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.43982 -41.34360 -40.05842 -37.98142 -36.32579 -35.95302 -34.66867 -33.16059 -32.37117 -31.80866 -30.35376 -29.56795 -27.84405 -26.58771 -25.29178 -24.81059 -23.31479 -21.71586 -21.61179 -21.26940 -20.02627 -18.89772 -18.55713 -17.92191 -17.52994 -17.14543 -16.73238 -16.54390 -16.53255 -16.10033 -15.92529 -15.51399 -15.26779 -15.04422 -14.80820 -14.72488 -14.62105 -14.18851 -13.99999 -13.69866 -13.45046 -13.36622 -13.23328 -13.08321 -12.97114 -12.95898 -12.77097 -12.64779 -12.58576 -12.33377 -12.04712 -11.89776 -11.62006 -11.09040 -10.99849 -10.80348 -10.27564 -10.07197 -10.06265 -9.39577 -8.96737 -8.00635 -5.44193 0.92404 1.43727 1.46979 1.47580 1.54770 1.56299 1.61858 1.65802 2.07661 2.43490 2.58876 3.18879 3.41977 3.58744 3.61170 3.82243 3.91035 4.04170 4.12481 4.13808 4.19395 4.23993 4.37018 4.46562 4.52477 4.64101 4.67644 4.74789 4.78225 4.79779 4.86820 4.93130 5.01264 5.08868 5.14990 5.23327 5.32983 5.35966 5.38769 5.57193 5.76762 6.08396 6.18645 6.47829 6.51399 6.80862 6.97680 7.11116 7.20517 7.63949 8.14838 9.08707 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009908 B = 0.003563 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.217015 B = 7857.539782 C = 9698.206817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.596 6.596 4 N -0.708 5.708 5 C 0.123 3.877 6 H 0.097 0.903 7 C -0.148 4.148 8 C 0.514 3.486 9 O -0.571 6.571 10 N -0.704 5.704 11 C 0.217 3.783 12 C -0.275 4.275 13 C 0.069 3.931 14 N -0.327 5.327 15 N -0.367 5.367 16 C 0.095 3.905 17 C 0.249 3.751 18 N -0.616 5.616 19 C -0.266 4.266 20 H 0.080 0.920 21 C -0.042 4.042 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.264 1.264 25 H -0.291 1.291 26 H -0.294 1.294 27 C 0.127 3.873 28 C 0.118 3.882 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.417 0.583 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.409 0.591 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.217 0.783 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.252 0.748 43 H 0.099 0.901 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.324 -2.003 -14.942 15.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.296 3.704 3 O -0.477 6.477 4 N -0.362 5.362 5 C 0.014 3.986 6 H 0.115 0.885 7 C -0.206 4.206 8 C 0.300 3.700 9 O -0.451 6.451 10 N -0.354 5.354 11 C 0.093 3.907 12 C -0.287 4.287 13 C -0.117 4.117 14 N -0.147 5.147 15 N -0.149 5.149 16 C -0.036 4.036 17 C 0.122 3.878 18 N -0.340 5.340 19 C -0.396 4.396 20 H 0.097 0.903 21 C -0.238 4.238 22 N -0.577 5.577 23 Si 0.793 3.207 24 H -0.188 1.188 25 H -0.218 1.218 26 H -0.221 1.221 27 C 0.001 3.999 28 C -0.005 4.005 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.127 0.873 32 H 0.255 0.745 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.245 0.755 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.234 0.766 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.117 0.883 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.163 -2.005 -14.785 15.490 hybrid contribution -0.835 0.010 1.454 1.677 sum -4.997 -1.995 -13.331 14.376 Atomic orbital electron populations 1.21898 0.87669 1.06522 1.06115 1.21665 0.92469 0.82373 0.73893 1.90712 1.72048 1.32924 1.52046 1.45907 1.05547 1.10082 1.74683 1.20748 0.82848 0.95379 0.99615 0.88484 1.22054 1.02613 1.03443 0.92488 1.20732 0.82723 0.88326 0.78213 1.90664 1.56066 1.47826 1.50583 1.46033 1.06347 1.21080 1.61967 1.19218 0.87296 0.86348 0.97833 1.19528 0.95556 1.11906 1.01725 1.24275 0.88879 0.98926 0.99632 1.77174 1.22108 1.14201 1.01181 1.48682 1.05795 1.39493 1.20885 1.22215 0.85809 0.98018 0.97605 1.19347 0.89166 0.93840 0.85461 1.44449 1.05914 1.80839 1.02769 1.19533 0.95638 1.42244 0.82150 0.90263 1.25710 0.97154 0.99299 1.01658 1.70092 1.03520 1.46021 1.38074 0.85248 0.77868 0.77265 0.80317 1.18829 1.21826 1.22077 1.21454 0.90274 0.93385 0.94820 1.22532 0.85076 0.98236 0.94665 0.87694 0.88207 0.87296 0.74453 0.89566 0.90569 0.91434 0.75526 0.93720 0.89026 0.76617 0.94896 0.90966 0.93907 0.88314 0.94217 0.90485 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 10.30 71.24 0.73 -1.39 16 2 C 0.51 11.76 7.90 87.66 0.69 12.45 16 3 O -0.60 -19.35 16.77 -3.06 -0.05 -19.40 16 4 N -0.71 -15.59 4.95 -446.08 -2.21 -17.80 16 5 C 0.12 2.96 2.98 44.24 0.13 3.09 16 6 H 0.10 2.73 7.58 -2.39 -0.02 2.71 16 7 C -0.15 -2.68 9.38 71.98 0.67 -2.00 16 8 C 0.51 14.29 7.22 87.66 0.63 14.92 16 9 O -0.57 -19.02 15.84 -3.03 -0.05 -19.06 16 10 N -0.70 -18.73 5.44 -466.79 -2.54 -21.27 16 11 C 0.22 6.43 5.95 85.63 0.51 6.94 16 12 C -0.27 -8.73 5.46 -20.24 -0.11 -8.84 16 13 C 0.07 1.94 11.97 85.26 1.02 2.96 16 14 N -0.33 -10.78 12.61 -56.79 -0.72 -11.50 16 15 N -0.37 -13.12 4.03 -333.93 -1.35 -14.46 16 16 C 0.09 3.62 6.71 41.30 0.28 3.90 16 17 C 0.25 11.38 5.11 85.55 0.44 11.81 16 18 N -0.62 -28.64 3.01 -701.02 -2.11 -30.75 16 19 C -0.27 -13.63 9.66 84.03 0.81 -12.81 16 20 H 0.08 3.88 7.88 -2.91 -0.02 3.86 16 21 C -0.04 -2.23 5.00 84.86 0.42 -1.81 16 22 N -0.93 -52.52 11.07 21.65 0.24 -52.28 16 23 Si 0.96 43.34 29.58 68.60 2.03 45.37 16 24 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 27 C 0.13 4.58 6.50 86.38 0.56 5.14 16 28 C 0.12 3.70 7.45 86.48 0.64 4.34 16 29 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.42 7.96 7.79 -92.71 -0.72 7.24 16 33 H 0.09 1.33 7.56 -2.38 -0.02 1.31 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 36 H 0.41 9.81 7.88 -92.71 -0.73 9.08 16 37 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.22 4.09 8.06 -2.91 -0.02 4.06 16 40 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 3.81 6.46 -2.39 -0.02 3.80 16 42 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.10 3.22 7.94 -2.38 -0.02 3.20 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 46 H 0.11 2.81 8.14 -2.38 -0.02 2.79 16 Total: -1.00 -72.17 385.24 0.26 -71.91 By element: Atomic # 1 Polarization: 30.98 SS G_CDS: -0.43 Total: 30.55 kcal Atomic # 6 Polarization: 31.26 SS G_CDS: 7.44 Total: 38.71 kcal Atomic # 7 Polarization: -139.38 SS G_CDS: -8.68 Total: -148.07 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.10 Total: -38.46 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -72.17 0.26 -71.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128178544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.324 kcal (2) G-P(sol) polarization free energy of solvation -72.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds